website/docs/full_javadoc/compbio/data/sequence/class-use/Range.html

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   6 <title>Uses of Class compbio.data.sequence.Range</title>
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  73 <h2 title="Uses of Class compbio.data.sequence.Range" class="title">Uses of Class<br>compbio.data.sequence.Range</h2>
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  78 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing packages, and an explanation">
  79 <caption><span>Packages that use <a href="../../../../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</a></span><span class="tabEnd">&nbsp;</span></caption>
  80 <tr>
  81 <th class="colFirst" scope="col">Package</th>
  82 <th class="colLast" scope="col">Description</th>
  83 </tr>
  84 <tbody>
  85 <tr class="altColor">
  86 <td class="colFirst"><a href="#compbio.data.sequence">compbio.data.sequence</a></td>
  87 <td class="colLast">
  88 <div class="block">A data model for multiple sequence alignment web services and utility methods
  89  that work on the objects of this model.</div>
  90 </td>
  91 </tr>
  92 </tbody>
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 100 <h3>Uses of <a href="../../../../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</a> in <a href="../../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</a></h3>
 101 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing fields, and an explanation">
 102 <caption><span>Fields in <a href="../../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</a> with type parameters of type <a href="../../../../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</a></span><span class="tabEnd">&nbsp;</span></caption>
 103 <tr>
 104 <th class="colFirst" scope="col">Modifier and Type</th>
 105 <th class="colLast" scope="col">Field and Description</th>
 106 </tr>
 107 <tbody>
 108 <tr class="altColor">
 109 <td class="colFirst"><code>private java.util.TreeSet&lt;<a href="../../../../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</a>&gt;</code></td>
 110 <td class="colLast"><span class="typeNameLabel">Score.</span><code><span class="memberNameLink"><a href="../../../../compbio/data/sequence/Score.html#ranges">ranges</a></span></code>&nbsp;</td>
 111 </tr>
 112 </tbody>
 113 </table>
 114 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 115 <caption><span>Methods in <a href="../../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</a> that return types with arguments of type <a href="../../../../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</a></span><span class="tabEnd">&nbsp;</span></caption>
 116 <tr>
 117 <th class="colFirst" scope="col">Modifier and Type</th>
 118 <th class="colLast" scope="col">Method and Description</th>
 119 </tr>
 120 <tbody>
 121 <tr class="altColor">
 122 <td class="colFirst"><code>java.util.TreeSet&lt;<a href="../../../../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</a>&gt;</code></td>
 123 <td class="colLast"><span class="typeNameLabel">Score.</span><code><span class="memberNameLink"><a href="../../../../compbio/data/sequence/Score.html#getRanges--">getRanges</a></span>()</code>
 124 <div class="block">Return Ranges if any Collections.EMPTY_SET otherwise</div>
 125 </td>
 126 </tr>
 127 <tr class="rowColor">
 128 <td class="colFirst"><code>private static java.util.TreeSet&lt;<a href="../../../../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</a>&gt;</code></td>
 129 <td class="colLast"><span class="typeNameLabel">SequenceUtil.</span><code><span class="memberNameLink"><a href="../../../../compbio/data/sequence/SequenceUtil.html#parseIUPredDomains-java.util.Scanner-">parseIUPredDomains</a></span>(java.util.Scanner&nbsp;scan)</code>
 130 <div class="block"># P53_HUMA
 131
 132  Number of globular domains: 2
 133
 134  globular domain 1.</div>
 135 </td>
 136 </tr>
 137 <tr class="altColor">
 138 <td class="colFirst"><code>private static java.util.TreeSet&lt;<a href="../../../../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</a>&gt;</code></td>
 139 <td class="colLast"><span class="typeNameLabel">SequenceUtil.</span><code><span class="memberNameLink"><a href="../../../../compbio/data/sequence/SequenceUtil.html#parseRanges-java.lang.Enum-java.lang.String-">parseRanges</a></span>(java.lang.Enum&nbsp;resultType,
 140            java.lang.String&nbsp;lines)</code>
 141 <div class="block">Parsing:
 142
 143  # COILS 34-41, 50-58, 83-91, 118-127, 160-169, 191-220, 243-252, 287-343,
 144  350-391, 429-485, 497-506, 539-547
 145
 146  # REM465 355-368
 147
 148  # HOTLOOPS 190-204</div>
 149 </td>
 150 </tr>
 151 </tbody>
 152 </table>
 153 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 154 <caption><span>Methods in <a href="../../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</a> with parameters of type <a href="../../../../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</a></span><span class="tabEnd">&nbsp;</span></caption>
 155 <tr>
 156 <th class="colFirst" scope="col">Modifier and Type</th>
 157 <th class="colLast" scope="col">Method and Description</th>
 158 </tr>
 159 <tbody>
 160 <tr class="altColor">
 161 <td class="colFirst"><code>int</code></td>
 162 <td class="colLast"><span class="typeNameLabel">Range.</span><code><span class="memberNameLink"><a href="../../../../compbio/data/sequence/Range.html#compareTo-compbio.data.sequence.Range-">compareTo</a></span>(<a href="../../../../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</a>&nbsp;o)</code>&nbsp;</td>
 163 </tr>
 164 </tbody>
 165 </table>
 166 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
 167 <caption><span>Method parameters in <a href="../../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</a> with type arguments of type <a href="../../../../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</a></span><span class="tabEnd">&nbsp;</span></caption>
 168 <tr>
 169 <th class="colFirst" scope="col">Modifier and Type</th>
 170 <th class="colLast" scope="col">Method and Description</th>
 171 </tr>
 172 <tbody>
 173 <tr class="altColor">
 174 <td class="colFirst"><code>void</code></td>
 175 <td class="colLast"><span class="typeNameLabel">Score.</span><code><span class="memberNameLink"><a href="../../../../compbio/data/sequence/Score.html#setRanges-java.util.TreeSet-">setRanges</a></span>(java.util.TreeSet&lt;<a href="../../../../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</a>&gt;&nbsp;ranges)</code>&nbsp;</td>
 176 </tr>
 177 </tbody>
 178 </table>
 179 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing constructors, and an explanation">
 180 <caption><span>Constructor parameters in <a href="../../../../compbio/data/sequence/package-summary.html">compbio.data.sequence</a> with type arguments of type <a href="../../../../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</a></span><span class="tabEnd">&nbsp;</span></caption>
 181 <tr>
 182 <th class="colOne" scope="col">Constructor and Description</th>
 183 </tr>
 184 <tbody>
 185 <tr class="altColor">
 186 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/data/sequence/Score.html#Score-java.lang.Enum-java.util.ArrayList-java.util.TreeSet-">Score</a></span>(java.lang.Enum&lt;?&gt;&nbsp;method,
 187      java.util.ArrayList&lt;java.lang.Float&gt;&nbsp;scores,
 188      java.util.TreeSet&lt;<a href="../../../../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</a>&gt;&nbsp;ranges)</code>&nbsp;</td>
 189 </tr>
 190 <tr class="rowColor">
 191 <td class="colLast"><code><span class="memberNameLink"><a href="../../../../compbio/data/sequence/Score.html#Score-java.lang.Enum-java.util.TreeSet-">Score</a></span>(java.lang.Enum&lt;?&gt;&nbsp;method,
 192      java.util.TreeSet&lt;<a href="../../../../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</a>&gt;&nbsp;ranges)</code>&nbsp;</td>
 193 </tr>
 194 </tbody>
 195 </table>
 196 </li>
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