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73 <h1 class="title">Hierarchy For Package compbio.data.sequence</h1>
74 <span class="packageHierarchyLabel">Package Hierarchies:</span>
75 <ul class="horizontal">
76 <li><a href="../../../overview-tree.html">All Packages</a></li>
79 <div class="contentContainer">
80 <h2 title="Class Hierarchy">Class Hierarchy</h2>
82 <li type="circle">java.lang.Object
84 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence"><span class="typeNameLink">Alignment</span></a></li>
85 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/AlignmentMetadata.html" title="class in compbio.data.sequence"><span class="typeNameLink">AlignmentMetadata</span></a></li>
86 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/ClustalAlignmentUtil.html" title="class in compbio.data.sequence"><span class="typeNameLink">ClustalAlignmentUtil</span></a></li>
87 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/FastaReader.html" title="class in compbio.data.sequence"><span class="typeNameLink">FastaReader</span></a> (implements java.util.Iterator<E>)</li>
88 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence"><span class="typeNameLink">FastaSequence</span></a></li>
89 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/Range.html" title="class in compbio.data.sequence"><span class="typeNameLink">Range</span></a> (implements java.lang.Comparable<T>)</li>
90 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/RNAStructReader.html" title="class in compbio.data.sequence"><span class="typeNameLink">RNAStructReader</span></a></li>
91 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/Score.html" title="class in compbio.data.sequence"><span class="typeNameLink">Score</span></a> (implements java.lang.Comparable<T>)</li>
92 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence"><span class="typeNameLink">ScoreManager</span></a>
94 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/RNAStructScoreManager.html" title="class in compbio.data.sequence"><span class="typeNameLink">RNAStructScoreManager</span></a></li>
97 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/ScoreManager.ScoreHolder.html" title="class in compbio.data.sequence"><span class="typeNameLink">ScoreManager.ScoreHolder</span></a></li>
98 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence"><span class="typeNameLink">SequenceUtil</span></a></li>
99 <li type="circle">java.lang.Throwable (implements java.io.Serializable)
101 <li type="circle">java.lang.Exception
103 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/UnknownFileFormatException.html" title="class in compbio.data.sequence"><span class="typeNameLink">UnknownFileFormatException</span></a></li>
111 <h2 title="Enum Hierarchy">Enum Hierarchy</h2>
113 <li type="circle">java.lang.Object
115 <li type="circle">java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
117 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence"><span class="typeNameLink">ConservationMethod</span></a></li>
118 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/IUPredResult.html" title="enum in compbio.data.sequence"><span class="typeNameLink">IUPredResult</span></a></li>
119 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/DisorderMethod.html" title="enum in compbio.data.sequence"><span class="typeNameLink">DisorderMethod</span></a></li>
120 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/RNAStructReader.RNAOut.html" title="enum in compbio.data.sequence"><span class="typeNameLink">RNAStructReader.RNAOut</span></a></li>
121 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/GlobProtResult.html" title="enum in compbio.data.sequence"><span class="typeNameLink">GlobProtResult</span></a></li>
122 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence"><span class="typeNameLink">Program</span></a></li>
123 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/DisemblResult.html" title="enum in compbio.data.sequence"><span class="typeNameLink">DisemblResult</span></a></li>
124 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/RNAStructReader.AlifoldResult.html" title="enum in compbio.data.sequence"><span class="typeNameLink">RNAStructReader.AlifoldResult</span></a></li>
125 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence"><span class="typeNameLink">RNAStructReader.AlifoldLine</span></a></li>
126 <li type="circle">compbio.data.sequence.<a href="../../../compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence"><span class="typeNameLink">SMERFSConstraints</span></a></li>
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