website/docs/full_javadoc/index-files/index-12.html

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  75 <h2 class="title">L</h2>
  76 <dl>
  77 <dt><span class="memberNameLink"><a href="../compbio/engine/client/CommandBuilder.Parameter.html#LAST">LAST</a></span> - Static variable in class compbio.engine.client.<a href="../compbio/engine/client/CommandBuilder.Parameter.html" title="class in compbio.engine.client">CommandBuilder.Parameter</a></dt>
  78 <dd>&nbsp;</dd>
  79 <dt><span class="memberNameLink"><a href="../compbio/engine/FilePuller.html#lastAccessTime">lastAccessTime</a></span> - Variable in class compbio.engine.<a href="../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</a></dt>
  80 <dd>&nbsp;</dd>
  81 <dt><span class="memberNameLink"><a href="../compbio/engine/local/LocalEngineUtil.html#launderThrowable-java.lang.Throwable-">launderThrowable(Throwable)</a></span> - Static method in class compbio.engine.local.<a href="../compbio/engine/local/LocalEngineUtil.html" title="class in compbio.engine.local">LocalEngineUtil</a></dt>
  82 <dd>
  83 <div class="block">Coerce an unchecked Throwable to a RuntimeException or Error</div>
  84 </dd>
  85 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/DirCleaner.html#LifeSpanInHours">LifeSpanInHours</a></span> - Variable in class compbio.stat.collector.<a href="../compbio/stat/collector/DirCleaner.html" title="class in compbio.stat.collector">DirCleaner</a></dt>
  86 <dd>&nbsp;</dd>
  87 <dt><a href="../compbio/metadata/Limit.html" title="class in compbio.metadata"><span class="typeNameLink">Limit</span></a>&lt;<a href="../compbio/metadata/Limit.html" title="type parameter in Limit">T</a>&gt; - Class in <a href="../compbio/metadata/package-summary.html">compbio.metadata</a></dt>
  88 <dd>
  89 <div class="block">A value object containing a maximum number of sequences and a maximum average
  90  sequence length for a preset.</div>
  91 </dd>
  92 <dt><span class="memberNameLink"><a href="../compbio/metadata/Limit.html#Limit--">Limit()</a></span> - Constructor for class compbio.metadata.<a href="../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</a></dt>
  93 <dd>&nbsp;</dd>
  94 <dt><span class="memberNameLink"><a href="../compbio/metadata/Limit.html#Limit-int-int-java.lang.String-">Limit(int, int, String)</a></span> - Constructor for class compbio.metadata.<a href="../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</a></dt>
  95 <dd>
  96 <div class="block">Instantiate the limit</div>
  97 </dd>
  98 <dt><span class="memberNameLink"><a href="../compbio/metadata/Limit.html#Limit-int-int-java.lang.String-boolean-">Limit(int, int, String, boolean)</a></span> - Constructor for class compbio.metadata.<a href="../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</a></dt>
  99 <dd>&nbsp;</dd>
 100 <dt><span class="memberNameLink"><a href="../compbio/metadata/LimitsManager.html#limit">limit</a></span> - Variable in class compbio.metadata.<a href="../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</a></dt>
 101 <dd>&nbsp;</dd>
 102 <dt><a href="../compbio/metadata/LimitExceededException.html" title="class in compbio.metadata"><span class="typeNameLink">LimitExceededException</span></a> - Exception in <a href="../compbio/metadata/package-summary.html">compbio.metadata</a></dt>
 103 <dd>
 104 <div class="block">This exception is thrown if the task larger in size that the limit that
 105  applies to the calculation.</div>
 106 </dd>
 107 <dt><span class="memberNameLink"><a href="../compbio/metadata/LimitExceededException.html#LimitExceededException-java.lang.String-">LimitExceededException(String)</a></span> - Constructor for exception compbio.metadata.<a href="../compbio/metadata/LimitExceededException.html" title="class in compbio.metadata">LimitExceededException</a></dt>
 108 <dd>&nbsp;</dd>
 109 <dt><a href="../compbio/data/msa/jaxws/LimitExceededExceptionBean.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">LimitExceededExceptionBean</span></a> - Class in <a href="../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</a></dt>
 110 <dd>
 111 <div class="block">This class was generated by the JAX-WS RI.</div>
 112 </dd>
 113 <dt><span class="memberNameLink"><a href="../compbio/data/msa/jaxws/LimitExceededExceptionBean.html#LimitExceededExceptionBean--">LimitExceededExceptionBean()</a></span> - Constructor for class compbio.data.msa.jaxws.<a href="../compbio/data/msa/jaxws/LimitExceededExceptionBean.html" title="class in compbio.data.msa.jaxws">LimitExceededExceptionBean</a></dt>
 114 <dd>&nbsp;</dd>
 115 <dt><span class="memberNameLink"><a href="../compbio/ws/client/Constraints.html#limitList">limitList</a></span> - Static variable in class compbio.ws.client.<a href="../compbio/ws/client/Constraints.html" title="class in compbio.ws.client">Constraints</a></dt>
 116 <dd>&nbsp;</dd>
 117 <dt><span class="memberNameLink"><a href="../compbio/ws/server/ClustalOWS.html#limitMan">limitMan</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/ClustalOWS.html" title="class in compbio.ws.server">ClustalOWS</a></dt>
 118 <dd>&nbsp;</dd>
 119 <dt><span class="memberNameLink"><a href="../compbio/ws/server/ClustalWS.html#limitMan">limitMan</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/ClustalWS.html" title="class in compbio.ws.server">ClustalWS</a></dt>
 120 <dd>&nbsp;</dd>
 121 <dt><span class="memberNameLink"><a href="../compbio/ws/server/GenericMetadataService.html#limitMan">limitMan</a></span> - Variable in class compbio.ws.server.<a href="../compbio/ws/server/GenericMetadataService.html" title="class in compbio.ws.server">GenericMetadataService</a></dt>
 122 <dd>&nbsp;</dd>
 123 <dt><span class="memberNameLink"><a href="../compbio/ws/server/GLprobsWS.html#limitMan">limitMan</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/GLprobsWS.html" title="class in compbio.ws.server">GLprobsWS</a></dt>
 124 <dd>&nbsp;</dd>
 125 <dt><span class="memberNameLink"><a href="../compbio/ws/server/MafftWS.html#limitMan">limitMan</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/MafftWS.html" title="class in compbio.ws.server">MafftWS</a></dt>
 126 <dd>&nbsp;</dd>
 127 <dt><span class="memberNameLink"><a href="../compbio/ws/server/MSAprobsWS.html#limitMan">limitMan</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/MSAprobsWS.html" title="class in compbio.ws.server">MSAprobsWS</a></dt>
 128 <dd>&nbsp;</dd>
 129 <dt><span class="memberNameLink"><a href="../compbio/ws/server/MuscleWS.html#limitMan">limitMan</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/MuscleWS.html" title="class in compbio.ws.server">MuscleWS</a></dt>
 130 <dd>&nbsp;</dd>
 131 <dt><span class="memberNameLink"><a href="../compbio/ws/server/ProbconsWS.html#limitMan">limitMan</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/ProbconsWS.html" title="class in compbio.ws.server">ProbconsWS</a></dt>
 132 <dd>&nbsp;</dd>
 133 <dt><span class="memberNameLink"><a href="../compbio/ws/server/TcoffeeWS.html#limitMan">limitMan</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/TcoffeeWS.html" title="class in compbio.ws.server">TcoffeeWS</a></dt>
 134 <dd>&nbsp;</dd>
 135 <dt><span class="memberNameLink"><a href="../compbio/engine/client/SkeletalExecutable.html#limits">limits</a></span> - Variable in class compbio.engine.client.<a href="../compbio/engine/client/SkeletalExecutable.html" title="class in compbio.engine.client">SkeletalExecutable</a></dt>
 136 <dd>&nbsp;</dd>
 137 <dt><a href="../compbio/metadata/LimitsManager.html" title="class in compbio.metadata"><span class="typeNameLink">LimitsManager</span></a>&lt;<a href="../compbio/metadata/LimitsManager.html" title="type parameter in LimitsManager">T</a>&gt; - Class in <a href="../compbio/metadata/package-summary.html">compbio.metadata</a></dt>
 138 <dd>
 139 <div class="block">A collection of Limits</div>
 140 </dd>
 141 <dt><span class="memberNameLink"><a href="../compbio/metadata/LimitsManager.html#LimitsManager--">LimitsManager()</a></span> - Constructor for class compbio.metadata.<a href="../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</a></dt>
 142 <dd>&nbsp;</dd>
 143 <dt><span class="memberNameLink"><a href="../compbio/ws/client/Services.ServiceInfo.html#line_delimiter">line_delimiter</a></span> - Static variable in class compbio.ws.client.<a href="../compbio/ws/client/Services.ServiceInfo.html" title="class in compbio.ws.client">Services.ServiceInfo</a></dt>
 144 <dd>&nbsp;</dd>
 145 <dt><span class="memberNameLink"><a href="../compbio/ws/client/Jws2Client.html#listAllServices-java.lang.String-">listAllServices(String)</a></span> - Static method in class compbio.ws.client.<a href="../compbio/ws/client/Jws2Client.html" title="class in compbio.ws.client">Jws2Client</a></dt>
 146 <dd>&nbsp;</dd>
 147 <dt><span class="memberNameLink"><a href="../compbio/ws/client/CmdHelper.html#listLimits-java.lang.String:A-">listLimits(String[])</a></span> - Static method in class compbio.ws.client.<a href="../compbio/ws/client/CmdHelper.html" title="class in compbio.ws.client">CmdHelper</a></dt>
 148 <dd>
 149 <div class="block">Checks whether limitList parameter is in the command line</div>
 150 </dd>
 151 <dt><span class="memberNameLink"><a href="../compbio/ws/client/CmdHelper.html#listParameters-java.lang.String:A-">listParameters(String[])</a></span> - Static method in class compbio.ws.client.<a href="../compbio/ws/client/CmdHelper.html" title="class in compbio.ws.client">CmdHelper</a></dt>
 152 <dd>
 153 <div class="block">Searches the command line keys in the array of parameters</div>
 154 </dd>
 155 <dt><span class="memberNameLink"><a href="../compbio/ws/client/CmdHelper.html#listPresets-java.lang.String:A-">listPresets(String[])</a></span> - Static method in class compbio.ws.client.<a href="../compbio/ws/client/CmdHelper.html" title="class in compbio.ws.client">CmdHelper</a></dt>
 156 <dd>
 157 <div class="block">Check whether presetList is set in the command line</div>
 158 </dd>
 159 <dt><span class="memberNameLink"><a href="../compbio/ws/client/CmdHelper.html#listServices-java.lang.String:A-">listServices(String[])</a></span> - Static method in class compbio.ws.client.<a href="../compbio/ws/client/CmdHelper.html" title="class in compbio.ws.client">CmdHelper</a></dt>
 160 <dd>
 161 <div class="block">list available services</div>
 162 </dd>
 163 <dt><span class="memberNameLink"><a href="../compbio/ws/client/Constraints.html#listServices">listServices</a></span> - Static variable in class compbio.ws.client.<a href="../compbio/ws/client/Constraints.html" title="class in compbio.ws.client">Constraints</a></dt>
 164 <dd>&nbsp;</dd>
 165 <dt><span class="memberNameLink"><a href="../compbio/ws/client/Constraints.html#listServicesOld">listServicesOld</a></span> - Static variable in class compbio.ws.client.<a href="../compbio/ws/client/Constraints.html" title="class in compbio.ws.client">Constraints</a></dt>
 166 <dd>&nbsp;</dd>
 167 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/DirCleaner.html#livesOverLifeSpan-compbio.stat.collector.JobDirectory-">livesOverLifeSpan(JobDirectory)</a></span> - Method in class compbio.stat.collector.<a href="../compbio/stat/collector/DirCleaner.html" title="class in compbio.stat.collector">DirCleaner</a></dt>
 168 <dd>&nbsp;</dd>
 169 <dt><span class="memberNameLink"><a href="../compbio/engine/client/RunConfiguration.html#load-java.io.InputStream-">load(InputStream)</a></span> - Static method in class compbio.engine.client.<a href="../compbio/engine/client/RunConfiguration.html" title="class in compbio.engine.client">RunConfiguration</a></dt>
 170 <dd>&nbsp;</dd>
 171 <dt><span class="memberNameLink"><a href="../compbio/ws/client/WSTester.html#loadAlignment--">loadAlignment()</a></span> - Static method in class compbio.ws.client.<a href="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</a></dt>
 172 <dd>
 173 <div class="block">Converting input to a form accepted by WS</div>
 174 </dd>
 175 <dt><a href="../compbio/engine/LoadBalancer.html" title="class in compbio.engine"><span class="typeNameLink">LoadBalancer</span></a> - Class in <a href="../compbio/engine/package-summary.html">compbio.engine</a></dt>
 176 <dd>
 177 <div class="block">This class decides where to execute the job.</div>
 178 </dd>
 179 <dt><span class="memberNameLink"><a href="../compbio/engine/LoadBalancer.html#LoadBalancer--">LoadBalancer()</a></span> - Constructor for class compbio.engine.<a href="../compbio/engine/LoadBalancer.html" title="class in compbio.engine">LoadBalancer</a></dt>
 180 <dd>&nbsp;</dd>
 181 <dt><span class="memberNameLink"><a href="../compbio/engine/client/EngineUtil.html#loadExecutable-java.lang.String-">loadExecutable(String)</a></span> - Static method in class compbio.engine.client.<a href="../compbio/engine/client/EngineUtil.html" title="class in compbio.engine.client">EngineUtil</a></dt>
 182 <dd>&nbsp;</dd>
 183 <dt><span class="memberNameLink"><a href="../compbio/engine/client/Util.html#loadExecutable-java.lang.String-">loadExecutable(String)</a></span> - Static method in class compbio.engine.client.<a href="../compbio/engine/client/Util.html" title="class in compbio.engine.client">Util</a></dt>
 184 <dd>&nbsp;</dd>
 185 <dt><span class="memberNameLink"><a href="../compbio/ws/client/IOHelper.html#loadParameters-java.io.File-">loadParameters(File)</a></span> - Static method in class compbio.ws.client.<a href="../compbio/ws/client/IOHelper.html" title="class in compbio.ws.client">IOHelper</a></dt>
 186 <dd>
 187 <div class="block">Load parameters from file</div>
 188 </dd>
 189 <dt><span class="memberNameLink"><a href="../compbio/ws/client/WSTester.html#loadRNAAlignment--">loadRNAAlignment()</a></span> - Static method in class compbio.ws.client.<a href="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</a></dt>
 190 <dd>
 191 <div class="block">Converting input to a form accepted by WS</div>
 192 </dd>
 193 <dt><span class="memberNameLink"><a href="../compbio/engine/client/ConfExecutable.html#loadRunConfiguration-compbio.engine.client.RunConfiguration-">loadRunConfiguration(RunConfiguration)</a></span> - Method in class compbio.engine.client.<a href="../compbio/engine/client/ConfExecutable.html" title="class in compbio.engine.client">ConfExecutable</a></dt>
 194 <dd>&nbsp;</dd>
 195 <dt><span class="memberNameLink"><a href="../compbio/engine/client/ConfExecutable.html#loadRunConfiguration-java.io.InputStream-">loadRunConfiguration(InputStream)</a></span> - Method in class compbio.engine.client.<a href="../compbio/engine/client/ConfExecutable.html" title="class in compbio.engine.client">ConfExecutable</a></dt>
 196 <dd>&nbsp;</dd>
 197 <dt><span class="memberNameLink"><a href="../compbio/engine/client/ConfiguredExecutable.html#loadRunConfiguration-java.io.InputStream-">loadRunConfiguration(InputStream)</a></span> - Method in interface compbio.engine.client.<a href="../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</a></dt>
 198 <dd>&nbsp;</dd>
 199 <dt><span class="memberNameLink"><a href="../compbio/engine/client/Executable.html#loadRunConfiguration-compbio.engine.client.RunConfiguration-">loadRunConfiguration(RunConfiguration)</a></span> - Method in interface compbio.engine.client.<a href="../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</a></dt>
 200 <dd>&nbsp;</dd>
 201 <dt><span class="memberNameLink"><a href="../compbio/engine/client/SkeletalExecutable.html#loadRunConfiguration-compbio.engine.client.RunConfiguration-">loadRunConfiguration(RunConfiguration)</a></span> - Method in class compbio.engine.client.<a href="../compbio/engine/client/SkeletalExecutable.html" title="class in compbio.engine.client">SkeletalExecutable</a></dt>
 202 <dd>&nbsp;</dd>
 203 <dt><span class="memberNameLink"><a href="../compbio/ws/client/WSTester.html#loadSeqs-int-">loadSeqs(int)</a></span> - Static method in class compbio.ws.client.<a href="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</a></dt>
 204 <dd>
 205 <div class="block">Converting input to a form accepted by WS</div>
 206 </dd>
 207 <dt><span class="memberNameLink"><a href="../compbio/metadata/PresetManager.html#LOCAL_ENGINE_LIMIT_PRESET">LOCAL_ENGINE_LIMIT_PRESET</a></span> - Static variable in class compbio.metadata.<a href="../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</a></dt>
 208 <dd>&nbsp;</dd>
 209 <dt><span class="memberNameLink"><a href="../compbio/engine/Configurator.html#LOCAL_WORK_DIRECTORY">LOCAL_WORK_DIRECTORY</a></span> - Static variable in class compbio.engine.<a href="../compbio/engine/Configurator.html" title="class in compbio.engine">Configurator</a></dt>
 210 <dd>&nbsp;</dd>
 211 <dt><span class="memberNameLink"><a href="../compbio/stat/servlet/StatisticCollector.html#localcf">localcf</a></span> - Variable in class compbio.stat.servlet.<a href="../compbio/stat/servlet/StatisticCollector.html" title="class in compbio.stat.servlet">StatisticCollector</a></dt>
 212 <dd>&nbsp;</dd>
 213 <dt><span class="memberNameLink"><a href="../compbio/ws/server/MainManager.html#localcl">localcl</a></span> - Variable in class compbio.ws.server.<a href="../compbio/ws/server/MainManager.html" title="class in compbio.ws.server">MainManager</a></dt>
 214 <dd>&nbsp;</dd>
 215 <dt><a href="../compbio/engine/local/LocalEngineUtil.html" title="class in compbio.engine.local"><span class="typeNameLink">LocalEngineUtil</span></a> - Class in <a href="../compbio/engine/local/package-summary.html">compbio.engine.local</a></dt>
 216 <dd>&nbsp;</dd>
 217 <dt><span class="memberNameLink"><a href="../compbio/engine/local/LocalEngineUtil.html#LocalEngineUtil--">LocalEngineUtil()</a></span> - Constructor for class compbio.engine.local.<a href="../compbio/engine/local/LocalEngineUtil.html" title="class in compbio.engine.local">LocalEngineUtil</a></dt>
 218 <dd>&nbsp;</dd>
 219 <dt><a href="../compbio/engine/local/LocalExecutorService.html" title="class in compbio.engine.local"><span class="typeNameLink">LocalExecutorService</span></a> - Class in <a href="../compbio/engine/local/package-summary.html">compbio.engine.local</a></dt>
 220 <dd>&nbsp;</dd>
 221 <dt><span class="memberNameLink"><a href="../compbio/engine/local/LocalExecutorService.html#LocalExecutorService-int-int-long-java.util.concurrent.TimeUnit-java.util.concurrent.BlockingQueue-">LocalExecutorService(int, int, long, TimeUnit, BlockingQueue&lt;Runnable&gt;)</a></span> - Constructor for class compbio.engine.local.<a href="../compbio/engine/local/LocalExecutorService.html" title="class in compbio.engine.local">LocalExecutorService</a></dt>
 222 <dd>&nbsp;</dd>
 223 <dt><a href="../compbio/engine/local/LocalRunner.html" title="class in compbio.engine.local"><span class="typeNameLink">LocalRunner</span></a> - Class in <a href="../compbio/engine/local/package-summary.html">compbio.engine.local</a></dt>
 224 <dd>&nbsp;</dd>
 225 <dt><span class="memberNameLink"><a href="../compbio/engine/local/LocalRunner.html#LocalRunner-compbio.engine.client.ConfiguredExecutable-">LocalRunner(ConfiguredExecutable&lt;?&gt;)</a></span> - Constructor for class compbio.engine.local.<a href="../compbio/engine/local/LocalRunner.html" title="class in compbio.engine.local">LocalRunner</a></dt>
 226 <dd>&nbsp;</dd>
 227 <dt><span class="memberNameLink"><a href="../compbio/stat/servlet/util/StatCollection.html#localStat">localStat</a></span> - Variable in class compbio.stat.servlet.util.<a href="../compbio/stat/servlet/util/StatCollection.html" title="class in compbio.stat.servlet.util">StatCollection</a></dt>
 228 <dd>&nbsp;</dd>
 229 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/ClustalAlignmentUtil.html#log">log</a></span> - Static variable in class compbio.data.sequence.<a href="../compbio/data/sequence/ClustalAlignmentUtil.html" title="class in compbio.data.sequence">ClustalAlignmentUtil</a></dt>
 230 <dd>&nbsp;</dd>
 231 <dt><span class="memberNameLink"><a href="../compbio/engine/Cleaner.html#log">log</a></span> - Static variable in class compbio.engine.<a href="../compbio/engine/Cleaner.html" title="class in compbio.engine">Cleaner</a></dt>
 232 <dd>&nbsp;</dd>
 233 <dt><span class="memberNameLink"><a href="../compbio/engine/client/CommandBuilder.html#log">log</a></span> - Static variable in class compbio.engine.client.<a href="../compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client">CommandBuilder</a></dt>
 234 <dd>&nbsp;</dd>
 235 <dt><span class="memberNameLink"><a href="../compbio/engine/client/ConfExecutable.html#log">log</a></span> - Static variable in class compbio.engine.client.<a href="../compbio/engine/client/ConfExecutable.html" title="class in compbio.engine.client">ConfExecutable</a></dt>
 236 <dd>&nbsp;</dd>
 237 <dt><span class="memberNameLink"><a href="../compbio/engine/client/EngineUtil.html#log">log</a></span> - Static variable in class compbio.engine.client.<a href="../compbio/engine/client/EngineUtil.html" title="class in compbio.engine.client">EngineUtil</a></dt>
 238 <dd>&nbsp;</dd>
 239 <dt><span class="memberNameLink"><a href="../compbio/engine/client/EnvVariableProcessor.html#log">log</a></span> - Static variable in class compbio.engine.client.<a href="../compbio/engine/client/EnvVariableProcessor.html" title="class in compbio.engine.client">EnvVariableProcessor</a></dt>
 240 <dd>&nbsp;</dd>
 241 <dt><span class="memberNameLink"><a href="../compbio/engine/client/RunConfiguration.html#log">log</a></span> - Static variable in class compbio.engine.client.<a href="../compbio/engine/client/RunConfiguration.html" title="class in compbio.engine.client">RunConfiguration</a></dt>
 242 <dd>&nbsp;</dd>
 243 <dt><span class="memberNameLink"><a href="../compbio/engine/client/SkeletalExecutable.html#log">log</a></span> - Static variable in class compbio.engine.client.<a href="../compbio/engine/client/SkeletalExecutable.html" title="class in compbio.engine.client">SkeletalExecutable</a></dt>
 244 <dd>&nbsp;</dd>
 245 <dt><span class="memberNameLink"><a href="../compbio/engine/client/Util.html#log">log</a></span> - Static variable in class compbio.engine.client.<a href="../compbio/engine/client/Util.html" title="class in compbio.engine.client">Util</a></dt>
 246 <dd>&nbsp;</dd>
 247 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/AsyncClusterRunner.html#log">log</a></span> - Static variable in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/AsyncClusterRunner.html" title="class in compbio.engine.cluster.drmaa">AsyncClusterRunner</a></dt>
 248 <dd>&nbsp;</dd>
 249 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/AsyncJobRunner.html#log">log</a></span> - Static variable in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/AsyncJobRunner.html" title="class in compbio.engine.cluster.drmaa">AsyncJobRunner</a></dt>
 250 <dd>&nbsp;</dd>
 251 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/ClusterEngineUtil.html#log">log</a></span> - Static variable in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/ClusterEngineUtil.html" title="class in compbio.engine.cluster.drmaa">ClusterEngineUtil</a></dt>
 252 <dd>&nbsp;</dd>
 253 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/ClusterRunner.html#log">log</a></span> - Static variable in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/ClusterRunner.html" title="class in compbio.engine.cluster.drmaa">ClusterRunner</a></dt>
 254 <dd>&nbsp;</dd>
 255 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/ClusterSession.html#log">log</a></span> - Static variable in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/ClusterSession.html" title="class in compbio.engine.cluster.drmaa">ClusterSession</a></dt>
 256 <dd>&nbsp;</dd>
 257 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/ClusterUtil.html#log">log</a></span> - Static variable in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/ClusterUtil.html" title="class in compbio.engine.cluster.drmaa">ClusterUtil</a></dt>
 258 <dd>&nbsp;</dd>
 259 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/JobRunner.html#log">log</a></span> - Static variable in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/JobRunner.html" title="class in compbio.engine.cluster.drmaa">JobRunner</a></dt>
 260 <dd>&nbsp;</dd>
 261 <dt><span class="memberNameLink"><a href="../compbio/engine/conf/DirectoryManager.html#log">log</a></span> - Static variable in class compbio.engine.conf.<a href="../compbio/engine/conf/DirectoryManager.html" title="class in compbio.engine.conf">DirectoryManager</a></dt>
 262 <dd>&nbsp;</dd>
 263 <dt><span class="memberNameLink"><a href="../compbio/engine/conf/PropertyHelperManager.html#log">log</a></span> - Static variable in class compbio.engine.conf.<a href="../compbio/engine/conf/PropertyHelperManager.html" title="class in compbio.engine.conf">PropertyHelperManager</a></dt>
 264 <dd>&nbsp;</dd>
 265 <dt><span class="memberNameLink"><a href="../compbio/engine/conf/RunnerConfigMarshaller.html#log">log</a></span> - Static variable in class compbio.engine.conf.<a href="../compbio/engine/conf/RunnerConfigMarshaller.html" title="class in compbio.engine.conf">RunnerConfigMarshaller</a></dt>
 266 <dd>&nbsp;</dd>
 267 <dt><span class="memberNameLink"><a href="../compbio/engine/Configurator.html#log">log</a></span> - Static variable in class compbio.engine.<a href="../compbio/engine/Configurator.html" title="class in compbio.engine">Configurator</a></dt>
 268 <dd>&nbsp;</dd>
 269 <dt><span class="memberNameLink"><a href="../compbio/engine/FilePuller.html#log">log</a></span> - Static variable in class compbio.engine.<a href="../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</a></dt>
 270 <dd>&nbsp;</dd>
 271 <dt><span class="memberNameLink"><a href="../compbio/engine/LoadBalancer.html#log">log</a></span> - Static variable in class compbio.engine.<a href="../compbio/engine/LoadBalancer.html" title="class in compbio.engine">LoadBalancer</a></dt>
 272 <dd>&nbsp;</dd>
 273 <dt><span class="memberNameLink"><a href="../compbio/engine/local/AsyncLocalRunner.html#log">log</a></span> - Static variable in class compbio.engine.local.<a href="../compbio/engine/local/AsyncLocalRunner.html" title="class in compbio.engine.local">AsyncLocalRunner</a></dt>
 274 <dd>&nbsp;</dd>
 275 <dt><span class="memberNameLink"><a href="../compbio/engine/local/ExecutableWrapper.html#log">log</a></span> - Static variable in class compbio.engine.local.<a href="../compbio/engine/local/ExecutableWrapper.html" title="class in compbio.engine.local">ExecutableWrapper</a></dt>
 276 <dd>&nbsp;</dd>
 277 <dt><span class="memberNameLink"><a href="../compbio/engine/local/LocalEngineUtil.html#log">log</a></span> - Static variable in class compbio.engine.local.<a href="../compbio/engine/local/LocalEngineUtil.html" title="class in compbio.engine.local">LocalEngineUtil</a></dt>
 278 <dd>&nbsp;</dd>
 279 <dt><span class="memberNameLink"><a href="../compbio/engine/local/LocalExecutorService.html#log">log</a></span> - Static variable in class compbio.engine.local.<a href="../compbio/engine/local/LocalExecutorService.html" title="class in compbio.engine.local">LocalExecutorService</a></dt>
 280 <dd>&nbsp;</dd>
 281 <dt><span class="memberNameLink"><a href="../compbio/engine/local/LocalRunner.html#log">log</a></span> - Static variable in class compbio.engine.local.<a href="../compbio/engine/local/LocalRunner.html" title="class in compbio.engine.local">LocalRunner</a></dt>
 282 <dd>&nbsp;</dd>
 283 <dt><span class="memberNameLink"><a href="../compbio/engine/local/StreamGobbler.html#log">log</a></span> - Static variable in class compbio.engine.local.<a href="../compbio/engine/local/StreamGobbler.html" title="class in compbio.engine.local">StreamGobbler</a></dt>
 284 <dd>&nbsp;</dd>
 285 <dt><span class="memberNameLink"><a href="../compbio/engine/ProgressGetter.html#log">log</a></span> - Static variable in class compbio.engine.<a href="../compbio/engine/ProgressGetter.html" title="class in compbio.engine">ProgressGetter</a></dt>
 286 <dd>&nbsp;</dd>
 287 <dt><span class="memberNameLink"><a href="../compbio/engine/PulledFileCache.html#log">log</a></span> - Static variable in class compbio.engine.<a href="../compbio/engine/PulledFileCache.html" title="class in compbio.engine">PulledFileCache</a></dt>
 288 <dd>&nbsp;</dd>
 289 <dt><span class="memberNameLink"><a href="../compbio/engine/SubmissionManager.html#log">log</a></span> - Static variable in class compbio.engine.<a href="../compbio/engine/SubmissionManager.html" title="class in compbio.engine">SubmissionManager</a></dt>
 290 <dd>&nbsp;</dd>
 291 <dt><span class="memberNameLink"><a href="../compbio/runner/conservation/AACon.html#log">log</a></span> - Static variable in class compbio.runner.conservation.<a href="../compbio/runner/conservation/AACon.html" title="class in compbio.runner.conservation">AACon</a></dt>
 292 <dd>&nbsp;</dd>
 293 <dt><span class="memberNameLink"><a href="../compbio/runner/disorder/Disembl.html#log">log</a></span> - Static variable in class compbio.runner.disorder.<a href="../compbio/runner/disorder/Disembl.html" title="class in compbio.runner.disorder">Disembl</a></dt>
 294 <dd>&nbsp;</dd>
 295 <dt><span class="memberNameLink"><a href="../compbio/runner/disorder/GlobPlot.html#log">log</a></span> - Static variable in class compbio.runner.disorder.<a href="../compbio/runner/disorder/GlobPlot.html" title="class in compbio.runner.disorder">GlobPlot</a></dt>
 296 <dd>&nbsp;</dd>
 297 <dt><span class="memberNameLink"><a href="../compbio/runner/disorder/IUPred.html#log">log</a></span> - Static variable in class compbio.runner.disorder.<a href="../compbio/runner/disorder/IUPred.html" title="class in compbio.runner.disorder">IUPred</a></dt>
 298 <dd>&nbsp;</dd>
 299 <dt><span class="memberNameLink"><a href="../compbio/runner/disorder/Jronn.html#log">log</a></span> - Static variable in class compbio.runner.disorder.<a href="../compbio/runner/disorder/Jronn.html" title="class in compbio.runner.disorder">Jronn</a></dt>
 300 <dd>&nbsp;</dd>
 301 <dt><span class="memberNameLink"><a href="../compbio/runner/msa/ClustalO.html#log">log</a></span> - Static variable in class compbio.runner.msa.<a href="../compbio/runner/msa/ClustalO.html" title="class in compbio.runner.msa">ClustalO</a></dt>
 302 <dd>&nbsp;</dd>
 303 <dt><span class="memberNameLink"><a href="../compbio/runner/msa/ClustalW.html#log">log</a></span> - Static variable in class compbio.runner.msa.<a href="../compbio/runner/msa/ClustalW.html" title="class in compbio.runner.msa">ClustalW</a></dt>
 304 <dd>&nbsp;</dd>
 305 <dt><span class="memberNameLink"><a href="../compbio/runner/msa/GLprobs.html#log">log</a></span> - Static variable in class compbio.runner.msa.<a href="../compbio/runner/msa/GLprobs.html" title="class in compbio.runner.msa">GLprobs</a></dt>
 306 <dd>&nbsp;</dd>
 307 <dt><span class="memberNameLink"><a href="../compbio/runner/msa/Mafft.html#log">log</a></span> - Static variable in class compbio.runner.msa.<a href="../compbio/runner/msa/Mafft.html" title="class in compbio.runner.msa">Mafft</a></dt>
 308 <dd>&nbsp;</dd>
 309 <dt><span class="memberNameLink"><a href="../compbio/runner/msa/MSAprobs.html#log">log</a></span> - Static variable in class compbio.runner.msa.<a href="../compbio/runner/msa/MSAprobs.html" title="class in compbio.runner.msa">MSAprobs</a></dt>
 310 <dd>&nbsp;</dd>
 311 <dt><span class="memberNameLink"><a href="../compbio/runner/msa/Muscle.html#log">log</a></span> - Static variable in class compbio.runner.msa.<a href="../compbio/runner/msa/Muscle.html" title="class in compbio.runner.msa">Muscle</a></dt>
 312 <dd>&nbsp;</dd>
 313 <dt><span class="memberNameLink"><a href="../compbio/runner/msa/Probcons.html#log">log</a></span> - Static variable in class compbio.runner.msa.<a href="../compbio/runner/msa/Probcons.html" title="class in compbio.runner.msa">Probcons</a></dt>
 314 <dd>&nbsp;</dd>
 315 <dt><span class="memberNameLink"><a href="../compbio/runner/msa/Tcoffee.html#log">log</a></span> - Static variable in class compbio.runner.msa.<a href="../compbio/runner/msa/Tcoffee.html" title="class in compbio.runner.msa">Tcoffee</a></dt>
 316 <dd>&nbsp;</dd>
 317 <dt><span class="memberNameLink"><a href="../compbio/runner/OptionCombinator.html#log">log</a></span> - Static variable in class compbio.runner.<a href="../compbio/runner/OptionCombinator.html" title="class in compbio.runner">OptionCombinator</a></dt>
 318 <dd>&nbsp;</dd>
 319 <dt><span class="memberNameLink"><a href="../compbio/runner/RunnerUtil.html#log">log</a></span> - Static variable in class compbio.runner.<a href="../compbio/runner/RunnerUtil.html" title="class in compbio.runner">RunnerUtil</a></dt>
 320 <dd>&nbsp;</dd>
 321 <dt><span class="memberNameLink"><a href="../compbio/runner/structure/RNAalifold.html#log">log</a></span> - Static variable in class compbio.runner.structure.<a href="../compbio/runner/structure/RNAalifold.html" title="class in compbio.runner.structure">RNAalifold</a></dt>
 322 <dd>&nbsp;</dd>
 323 <dt><span class="memberNameLink"><a href="../compbio/runner/Util.html#log">log</a></span> - Static variable in class compbio.runner.<a href="../compbio/runner/Util.html" title="class in compbio.runner">Util</a></dt>
 324 <dd>&nbsp;</dd>
 325 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/DirCleaner.html#log">log</a></span> - Static variable in class compbio.stat.collector.<a href="../compbio/stat/collector/DirCleaner.html" title="class in compbio.stat.collector">DirCleaner</a></dt>
 326 <dd>&nbsp;</dd>
 327 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/ExecutionStatCollector.html#log">log</a></span> - Static variable in class compbio.stat.collector.<a href="../compbio/stat/collector/ExecutionStatCollector.html" title="class in compbio.stat.collector">ExecutionStatCollector</a></dt>
 328 <dd>&nbsp;</dd>
 329 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/InputFilter.html#log">log</a></span> - Static variable in class compbio.stat.collector.<a href="../compbio/stat/collector/InputFilter.html" title="class in compbio.stat.collector">InputFilter</a></dt>
 330 <dd>&nbsp;</dd>
 331 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/JobDirectory.html#log">log</a></span> - Static variable in class compbio.stat.collector.<a href="../compbio/stat/collector/JobDirectory.html" title="class in compbio.stat.collector">JobDirectory</a></dt>
 332 <dd>&nbsp;</dd>
 333 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/StatDB.html#log">log</a></span> - Static variable in class compbio.stat.collector.<a href="../compbio/stat/collector/StatDB.html" title="class in compbio.stat.collector">StatDB</a></dt>
 334 <dd>&nbsp;</dd>
 335 <dt><span class="memberNameLink"><a href="../compbio/stat/servlet/DisplayStat.html#log">log</a></span> - Static variable in class compbio.stat.servlet.<a href="../compbio/stat/servlet/DisplayStat.html" title="class in compbio.stat.servlet">DisplayStat</a></dt>
 336 <dd>&nbsp;</dd>
 337 <dt><span class="memberNameLink"><a href="../compbio/stat/servlet/HttpCodeResponseServiceStatus.html#log">log</a></span> - Static variable in class compbio.stat.servlet.<a href="../compbio/stat/servlet/HttpCodeResponseServiceStatus.html" title="class in compbio.stat.servlet">HttpCodeResponseServiceStatus</a></dt>
 338 <dd>&nbsp;</dd>
 339 <dt><span class="memberNameLink"><a href="../compbio/stat/servlet/ServiceStatus.html#log">log</a></span> - Static variable in class compbio.stat.servlet.<a href="../compbio/stat/servlet/ServiceStatus.html" title="class in compbio.stat.servlet">ServiceStatus</a></dt>
 340 <dd>&nbsp;</dd>
 341 <dt><span class="memberNameLink"><a href="../compbio/stat/servlet/StatisticCollector.html#log">log</a></span> - Variable in class compbio.stat.servlet.<a href="../compbio/stat/servlet/StatisticCollector.html" title="class in compbio.stat.servlet">StatisticCollector</a></dt>
 342 <dd>&nbsp;</dd>
 343 <dt><span class="memberNameLink"><a href="../compbio/stat/servlet/util/StatCollection.html#log">log</a></span> - Static variable in class compbio.stat.servlet.util.<a href="../compbio/stat/servlet/util/StatCollection.html" title="class in compbio.stat.servlet.util">StatCollection</a></dt>
 344 <dd>&nbsp;</dd>
 345 <dt><span class="memberNameLink"><a href="../compbio/ws/client/AAConClient.html#log">log</a></span> - Static variable in class compbio.ws.client.<a href="../compbio/ws/client/AAConClient.html" title="class in compbio.ws.client">AAConClient</a></dt>
 346 <dd>
 347 <div class="block">Use java.util.Logger instead of log4j logger to reduce the size of the
 348  client package</div>
 349 </dd>
 350 <dt><span class="memberNameLink"><a href="../compbio/ws/client/Jws2Client.html#log">log</a></span> - Static variable in class compbio.ws.client.<a href="../compbio/ws/client/Jws2Client.html" title="class in compbio.ws.client">Jws2Client</a></dt>
 351 <dd>
 352 <div class="block">Use java.util.Logger instead of log4j logger to reduce the size of the client package</div>
 353 </dd>
 354 <dt><span class="memberNameLink"><a href="../compbio/ws/server/AAConWS.html#log">log</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/AAConWS.html" title="class in compbio.ws.server">AAConWS</a></dt>
 355 <dd>&nbsp;</dd>
 356 <dt><span class="memberNameLink"><a href="../compbio/ws/server/ClustalOWS.html#log">log</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/ClustalOWS.html" title="class in compbio.ws.server">ClustalOWS</a></dt>
 357 <dd>&nbsp;</dd>
 358 <dt><span class="memberNameLink"><a href="../compbio/ws/server/ClustalWS.html#log">log</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/ClustalWS.html" title="class in compbio.ws.server">ClustalWS</a></dt>
 359 <dd>&nbsp;</dd>
 360 <dt><span class="memberNameLink"><a href="../compbio/ws/server/DisemblWS.html#log">log</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/DisemblWS.html" title="class in compbio.ws.server">DisemblWS</a></dt>
 361 <dd>&nbsp;</dd>
 362 <dt><span class="memberNameLink"><a href="../compbio/ws/server/GAUtils.html#log">log</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/GAUtils.html" title="class in compbio.ws.server">GAUtils</a></dt>
 363 <dd>&nbsp;</dd>
 364 <dt><span class="memberNameLink"><a href="../compbio/ws/server/GenericMetadataService.html#log">log</a></span> - Variable in class compbio.ws.server.<a href="../compbio/ws/server/GenericMetadataService.html" title="class in compbio.ws.server">GenericMetadataService</a></dt>
 365 <dd>&nbsp;</dd>
 366 <dt><span class="memberNameLink"><a href="../compbio/ws/server/GlobPlotWS.html#log">log</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/GlobPlotWS.html" title="class in compbio.ws.server">GlobPlotWS</a></dt>
 367 <dd>&nbsp;</dd>
 368 <dt><span class="memberNameLink"><a href="../compbio/ws/server/GLprobsWS.html#log">log</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/GLprobsWS.html" title="class in compbio.ws.server">GLprobsWS</a></dt>
 369 <dd>&nbsp;</dd>
 370 <dt><span class="memberNameLink"><a href="../compbio/ws/server/IUPredWS.html#log">log</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/IUPredWS.html" title="class in compbio.ws.server">IUPredWS</a></dt>
 371 <dd>&nbsp;</dd>
 372 <dt><span class="memberNameLink"><a href="../compbio/ws/server/JronnWS.html#log">log</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/JronnWS.html" title="class in compbio.ws.server">JronnWS</a></dt>
 373 <dd>&nbsp;</dd>
 374 <dt><span class="memberNameLink"><a href="../compbio/ws/server/MafftWS.html#log">log</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/MafftWS.html" title="class in compbio.ws.server">MafftWS</a></dt>
 375 <dd>&nbsp;</dd>
 376 <dt><span class="memberNameLink"><a href="../compbio/ws/server/MainManager.html#log">log</a></span> - Variable in class compbio.ws.server.<a href="../compbio/ws/server/MainManager.html" title="class in compbio.ws.server">MainManager</a></dt>
 377 <dd>&nbsp;</dd>
 378 <dt><span class="memberNameLink"><a href="../compbio/ws/server/MSAprobsWS.html#log">log</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/MSAprobsWS.html" title="class in compbio.ws.server">MSAprobsWS</a></dt>
 379 <dd>&nbsp;</dd>
 380 <dt><span class="memberNameLink"><a href="../compbio/ws/server/MuscleWS.html#log">log</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/MuscleWS.html" title="class in compbio.ws.server">MuscleWS</a></dt>
 381 <dd>&nbsp;</dd>
 382 <dt><span class="memberNameLink"><a href="../compbio/ws/server/ProbconsWS.html#log">log</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/ProbconsWS.html" title="class in compbio.ws.server">ProbconsWS</a></dt>
 383 <dd>&nbsp;</dd>
 384 <dt><span class="memberNameLink"><a href="../compbio/ws/server/RegistryWS.html#log">log</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/RegistryWS.html" title="class in compbio.ws.server">RegistryWS</a></dt>
 385 <dd>&nbsp;</dd>
 386 <dt><span class="memberNameLink"><a href="../compbio/ws/server/RNAalifoldWS.html#log">log</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/RNAalifoldWS.html" title="class in compbio.ws.server">RNAalifoldWS</a></dt>
 387 <dd>&nbsp;</dd>
 388 <dt><span class="memberNameLink"><a href="../compbio/ws/server/SetExecutableFlag.html#log">log</a></span> - Variable in class compbio.ws.server.<a href="../compbio/ws/server/SetExecutableFlag.html" title="class in compbio.ws.server">SetExecutableFlag</a></dt>
 389 <dd>&nbsp;</dd>
 390 <dt><span class="memberNameLink"><a href="../compbio/ws/server/TcoffeeWS.html#log">log</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/TcoffeeWS.html" title="class in compbio.ws.server">TcoffeeWS</a></dt>
 391 <dd>&nbsp;</dd>
 392 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/ClusterSession.html#logStatistics-org.ggf.drmaa.JobInfo-">logStatistics(JobInfo)</a></span> - Static method in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/ClusterSession.html" title="class in compbio.engine.cluster.drmaa">ClusterSession</a></dt>
 393 <dd>&nbsp;</dd>
 394 <dt><span class="memberNameLink"><a href="../compbio/runner/disorder/IUPred.html#LONG_OUTPUT">LONG_OUTPUT</a></span> - Static variable in class compbio.runner.disorder.<a href="../compbio/runner/disorder/IUPred.html" title="class in compbio.runner.disorder">IUPred</a></dt>
 395 <dd>&nbsp;</dd>
 396 <dt><span class="memberNameLink"><a href="../compbio/runner/disorder/Disembl.html#LOOPS_EXPECTATION_THRESHOLD">LOOPS_EXPECTATION_THRESHOLD</a></span> - Variable in class compbio.runner.disorder.<a href="../compbio/runner/disorder/Disembl.html" title="class in compbio.runner.disorder">Disembl</a></dt>
 397 <dd>&nbsp;</dd>
 398 </dl>
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