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  75 <h2 class="title">T</h2>
  76 <dl>
  77 <dt><span class="memberNameLink"><a href="../compbio/engine/client/ConfExecutable.html#taskDirectory">taskDirectory</a></span> - Variable in class compbio.engine.client.<a href="../compbio/engine/client/ConfExecutable.html" title="class in compbio.engine.client">ConfExecutable</a></dt>
  78 <dd>&nbsp;</dd>
  79 <dt><span class="memberNameLink"><a href="../compbio/engine/client/RunConfiguration.html#taskId">taskId</a></span> - Variable in class compbio.engine.client.<a href="../compbio/engine/client/RunConfiguration.html" title="class in compbio.engine.client">RunConfiguration</a></dt>
  80 <dd>
  81 <div class="block">Task ID (is a part of workDirectory but extracting it from there could be
  82  tricky)</div>
  83 </dd>
  84 <dt><span class="memberNameLink"><a href="../compbio/engine/Job.html#taskId">taskId</a></span> - Variable in class compbio.engine.<a href="../compbio/engine/Job.html" title="class in compbio.engine">Job</a></dt>
  85 <dd>&nbsp;</dd>
  86 <dt><a href="../compbio/runner/msa/Tcoffee.html" title="class in compbio.runner.msa"><span class="typeNameLink">Tcoffee</span></a> - Class in <a href="../compbio/runner/msa/package-summary.html">compbio.runner.msa</a></dt>
  87 <dd>&nbsp;</dd>
  88 <dt><span class="memberNameLink"><a href="../compbio/runner/msa/Tcoffee.html#Tcoffee--">Tcoffee()</a></span> - Constructor for class compbio.runner.msa.<a href="../compbio/runner/msa/Tcoffee.html" title="class in compbio.runner.msa">Tcoffee</a></dt>
  89 <dd>&nbsp;</dd>
  90 <dt><span class="memberNameLink"><a href="../compbio/ws/client/Services.html#TCOFFEE_INFO">TCOFFEE_INFO</a></span> - Static variable in enum compbio.ws.client.<a href="../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</a></dt>
  91 <dd>&nbsp;</dd>
  92 <dt><span class="memberNameLink"><a href="../compbio/ws/server/TcoffeeWS.html#tcoffeeOptions">tcoffeeOptions</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/TcoffeeWS.html" title="class in compbio.ws.server">TcoffeeWS</a></dt>
  93 <dd>&nbsp;</dd>
  94 <dt><span class="memberNameLink"><a href="../compbio/ws/server/TcoffeeWS.html#tcoffeePresets">tcoffeePresets</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/TcoffeeWS.html" title="class in compbio.ws.server">TcoffeeWS</a></dt>
  95 <dd>&nbsp;</dd>
  96 <dt><a href="../compbio/ws/server/TcoffeeWS.html" title="class in compbio.ws.server"><span class="typeNameLink">TcoffeeWS</span></a> - Class in <a href="../compbio/ws/server/package-summary.html">compbio.ws.server</a></dt>
  97 <dd>&nbsp;</dd>
  98 <dt><span class="memberNameLink"><a href="../compbio/ws/server/TcoffeeWS.html#TcoffeeWS--">TcoffeeWS()</a></span> - Constructor for class compbio.ws.server.<a href="../compbio/ws/server/TcoffeeWS.html" title="class in compbio.ws.server">TcoffeeWS</a></dt>
  99 <dd>&nbsp;</dd>
 100 <dt><span class="memberNameLink"><a href="../compbio/engine/local/LocalExecutorService.html#terminated--">terminated()</a></span> - Method in class compbio.engine.local.<a href="../compbio/engine/local/LocalExecutorService.html" title="class in compbio.engine.local">LocalExecutorService</a></dt>
 101 <dd>&nbsp;</dd>
 102 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/StatisticManager.html#termSignal--">termSignal()</a></span> - Method in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/StatisticManager.html" title="class in compbio.engine.cluster.drmaa">StatisticManager</a></dt>
 103 <dd>&nbsp;</dd>
 104 <dt><a href="../compbio/data/msa/jaxws/TestAllServices.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">TestAllServices</span></a> - Class in <a href="../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</a></dt>
 105 <dd>&nbsp;</dd>
 106 <dt><span class="memberNameLink"><a href="../compbio/data/msa/jaxws/TestAllServices.html#TestAllServices--">TestAllServices()</a></span> - Constructor for class compbio.data.msa.jaxws.<a href="../compbio/data/msa/jaxws/TestAllServices.html" title="class in compbio.data.msa.jaxws">TestAllServices</a></dt>
 107 <dd>&nbsp;</dd>
 108 <dt><span class="memberNameLink"><a href="../compbio/data/msa/RegistryWS.html#testAllServices--">testAllServices()</a></span> - Method in interface compbio.data.msa.<a href="../compbio/data/msa/RegistryWS.html" title="interface in compbio.data.msa">RegistryWS</a></dt>
 109 <dd>
 110 <div class="block">Test all JABAWS services on the server</div>
 111 </dd>
 112 <dt><span class="memberNameLink"><a href="../compbio/ws/server/RegistryWS.html#testAllServices--">testAllServices()</a></span> - Method in class compbio.ws.server.<a href="../compbio/ws/server/RegistryWS.html" title="class in compbio.ws.server">RegistryWS</a></dt>
 113 <dd>
 114 <div class="block">TODO improve reporting.</div>
 115 </dd>
 116 <dt><a href="../compbio/data/msa/jaxws/TestAllServicesResponse.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">TestAllServicesResponse</span></a> - Class in <a href="../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</a></dt>
 117 <dd>&nbsp;</dd>
 118 <dt><span class="memberNameLink"><a href="../compbio/data/msa/jaxws/TestAllServicesResponse.html#TestAllServicesResponse--">TestAllServicesResponse()</a></span> - Constructor for class compbio.data.msa.jaxws.<a href="../compbio/data/msa/jaxws/TestAllServicesResponse.html" title="class in compbio.data.msa.jaxws">TestAllServicesResponse</a></dt>
 119 <dd>&nbsp;</dd>
 120 <dt><span class="memberNameLink"><a href="../compbio/ws/client/WSTester.html#testDefaultAlignment-compbio.data.msa.MsaWS-compbio.ws.client.Services-">testDefaultAlignment(MsaWS&lt;T&gt;, Services)</a></span> - Method in class compbio.ws.client.<a href="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</a></dt>
 121 <dd>
 122 <div class="block">Align using default settings</div>
 123 </dd>
 124 <dt><span class="memberNameLink"><a href="../compbio/ws/client/WSTester.html#testDefaultAnalyse-java.util.List-compbio.data.msa.SequenceAnnotation-compbio.metadata.Preset-java.util.List-">testDefaultAnalyse(List&lt;FastaSequence&gt;, SequenceAnnotation&lt;T&gt;, Preset&lt;T&gt;, List&lt;Option&lt;T&gt;&gt;)</a></span> - Method in class compbio.ws.client.<a href="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</a></dt>
 125 <dd>&nbsp;</dd>
 126 <dt><span class="memberNameLink"><a href="../compbio/ws/client/Constraints.html#testKey">testKey</a></span> - Static variable in class compbio.ws.client.<a href="../compbio/ws/client/Constraints.html" title="class in compbio.ws.client">Constraints</a></dt>
 127 <dd>&nbsp;</dd>
 128 <dt><span class="memberNameLink"><a href="../compbio/ws/client/WSTester.html#testMetadata-compbio.data.msa.Metadata-">testMetadata(Metadata&lt;T&gt;)</a></span> - Method in class compbio.ws.client.<a href="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</a></dt>
 129 <dd>&nbsp;</dd>
 130 <dt><span class="memberNameLink"><a href="../compbio/ws/client/WSTester.html#testMsaWS-compbio.data.msa.MsaWS-compbio.ws.client.Services-">testMsaWS(MsaWS&lt;T&gt;, Services)</a></span> - Method in class compbio.ws.client.<a href="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</a></dt>
 131 <dd>&nbsp;</dd>
 132 <dt><span class="memberNameLink"><a href="../compbio/ws/client/WSTester.html#testSequenceAnnotationWS-compbio.data.msa.SequenceAnnotation-compbio.ws.client.Services-">testSequenceAnnotationWS(SequenceAnnotation&lt;T&gt;, Services)</a></span> - Method in class compbio.ws.client.<a href="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</a></dt>
 133 <dd>&nbsp;</dd>
 134 <dt><a href="../compbio/data/msa/jaxws/TestService.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">TestService</span></a> - Class in <a href="../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</a></dt>
 135 <dd>&nbsp;</dd>
 136 <dt><span class="memberNameLink"><a href="../compbio/data/msa/jaxws/TestService.html#TestService--">TestService()</a></span> - Constructor for class compbio.data.msa.jaxws.<a href="../compbio/data/msa/jaxws/TestService.html" title="class in compbio.data.msa.jaxws">TestService</a></dt>
 137 <dd>&nbsp;</dd>
 138 <dt><span class="memberNameLink"><a href="../compbio/data/msa/RegistryWS.html#testService-compbio.ws.client.Services-">testService(Services)</a></span> - Method in interface compbio.data.msa.<a href="../compbio/data/msa/RegistryWS.html" title="interface in compbio.data.msa">RegistryWS</a></dt>
 139 <dd>
 140 <div class="block">Test a particular service</div>
 141 </dd>
 142 <dt><span class="memberNameLink"><a href="../compbio/ws/client/CmdHelper.html#testService-java.lang.String:A-">testService(String[])</a></span> - Static method in class compbio.ws.client.<a href="../compbio/ws/client/CmdHelper.html" title="class in compbio.ws.client">CmdHelper</a></dt>
 143 <dd>
 144 <div class="block">tests service</div>
 145 </dd>
 146 <dt><span class="memberNameLink"><a href="../compbio/ws/client/Jws2Client.html#testService-java.lang.String-compbio.ws.client.Services-java.io.PrintWriter-">testService(String, Services, PrintWriter)</a></span> - Static method in class compbio.ws.client.<a href="../compbio/ws/client/Jws2Client.html" title="class in compbio.ws.client">Jws2Client</a></dt>
 147 <dd>
 148 <div class="block">Asks registry to test the service on the host hostname</div>
 149 </dd>
 150 <dt><span class="memberNameLink"><a href="../compbio/ws/server/RegistryWS.html#testService-compbio.ws.client.Services-">testService(Services)</a></span> - Method in class compbio.ws.server.<a href="../compbio/ws/server/RegistryWS.html" title="class in compbio.ws.server">RegistryWS</a></dt>
 151 <dd>&nbsp;</dd>
 152 <dt><a href="../compbio/data/msa/jaxws/TestServiceResponse.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">TestServiceResponse</span></a> - Class in <a href="../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</a></dt>
 153 <dd>&nbsp;</dd>
 154 <dt><span class="memberNameLink"><a href="../compbio/data/msa/jaxws/TestServiceResponse.html#TestServiceResponse--">TestServiceResponse()</a></span> - Constructor for class compbio.data.msa.jaxws.<a href="../compbio/data/msa/jaxws/TestServiceResponse.html" title="class in compbio.data.msa.jaxws">TestServiceResponse</a></dt>
 155 <dd>&nbsp;</dd>
 156 <dt><span class="memberNameLink"><a href="../compbio/engine/local/LocalExecutorService.html#threadNumPropName">threadNumPropName</a></span> - Static variable in class compbio.engine.local.<a href="../compbio/engine/local/LocalExecutorService.html" title="class in compbio.engine.local">LocalExecutorService</a></dt>
 157 <dd>&nbsp;</dd>
 158 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/ExecutionStatCollector.html#timeOutInHours">timeOutInHours</a></span> - Variable in class compbio.stat.collector.<a href="../compbio/stat/collector/ExecutionStatCollector.html" title="class in compbio.stat.collector">ExecutionStatCollector</a></dt>
 159 <dd>
 160 <div class="block">Consider the job that has been working for longer than timeOutInHours
 161  completed, whatever the outcome</div>
 162 </dd>
 163 <dt><span class="memberNameLink"><a href="../compbio/ws/server/RegistryWS.html#timeToTest--">timeToTest()</a></span> - Method in class compbio.ws.server.<a href="../compbio/ws/server/RegistryWS.html" title="class in compbio.ws.server">RegistryWS</a></dt>
 164 <dd>&nbsp;</dd>
 165 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/Range.html#to">to</a></span> - Variable in class compbio.data.sequence.<a href="../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</a></dt>
 166 <dd>&nbsp;</dd>
 167 <dt><span class="memberNameLink"><a href="../compbio/engine/client/CommandBuilder.Parameter.html#toCommand-java.lang.String-">toCommand(String)</a></span> - Method in class compbio.engine.client.<a href="../compbio/engine/client/CommandBuilder.Parameter.html" title="class in compbio.engine.client">CommandBuilder.Parameter</a></dt>
 168 <dd>&nbsp;</dd>
 169 <dt><span class="memberNameLink"><a href="../compbio/metadata/Option.html#toCommand-java.lang.String-">toCommand(String)</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/Option.html" title="class in compbio.metadata">Option</a></dt>
 170 <dd>
 171 <div class="block">Convert the option to the command string.</div>
 172 </dd>
 173 <dt><span class="memberNameLink"><a href="../compbio/metadata/Parameter.html#toCommand-java.lang.String-">toCommand(String)</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a></dt>
 174 <dd>&nbsp;</dd>
 175 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/FastaReader.html#toFastaSequence-java.lang.String-">toFastaSequence(String)</a></span> - Static method in class compbio.data.sequence.<a href="../compbio/data/sequence/FastaReader.html" title="class in compbio.data.sequence">FastaReader</a></dt>
 176 <dd>&nbsp;</dd>
 177 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/Score.html#toList-float:A-">toList(float[])</a></span> - Method in class compbio.data.sequence.<a href="../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a></dt>
 178 <dd>&nbsp;</dd>
 179 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/Alignment.html#toString--">toString()</a></span> - Method in class compbio.data.sequence.<a href="../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</a></dt>
 180 <dd>&nbsp;</dd>
 181 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/FastaSequence.html#toString--">toString()</a></span> - Method in class compbio.data.sequence.<a href="../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a></dt>
 182 <dd>
 183 <div class="block">Same as oneLineFasta</div>
 184 </dd>
 185 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/Range.html#toString--">toString()</a></span> - Method in class compbio.data.sequence.<a href="../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</a></dt>
 186 <dd>&nbsp;</dd>
 187 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/RNAStructScoreManager.html#toString--">toString()</a></span> - Method in class compbio.data.sequence.<a href="../compbio/data/sequence/RNAStructScoreManager.html" title="class in compbio.data.sequence">RNAStructScoreManager</a></dt>
 188 <dd>&nbsp;</dd>
 189 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/Score.html#toString--">toString()</a></span> - Method in class compbio.data.sequence.<a href="../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a></dt>
 190 <dd>&nbsp;</dd>
 191 <dt><span class="memberNameLink"><a href="../compbio/engine/client/CommandBuilder.Parameter.html#toString--">toString()</a></span> - Method in class compbio.engine.client.<a href="../compbio/engine/client/CommandBuilder.Parameter.html" title="class in compbio.engine.client">CommandBuilder.Parameter</a></dt>
 192 <dd>&nbsp;</dd>
 193 <dt><span class="memberNameLink"><a href="../compbio/engine/client/CommandBuilder.html#toString--">toString()</a></span> - Method in class compbio.engine.client.<a href="../compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client">CommandBuilder</a></dt>
 194 <dd>&nbsp;</dd>
 195 <dt><span class="memberNameLink"><a href="../compbio/engine/client/ConfExecutable.html#toString--">toString()</a></span> - Method in class compbio.engine.client.<a href="../compbio/engine/client/ConfExecutable.html" title="class in compbio.engine.client">ConfExecutable</a></dt>
 196 <dd>&nbsp;</dd>
 197 <dt><span class="memberNameLink"><a href="../compbio/engine/client/RunConfiguration.html#toString--">toString()</a></span> - Method in class compbio.engine.client.<a href="../compbio/engine/client/RunConfiguration.html" title="class in compbio.engine.client">RunConfiguration</a></dt>
 198 <dd>&nbsp;</dd>
 199 <dt><span class="memberNameLink"><a href="../compbio/engine/client/SkeletalExecutable.html#toString--">toString()</a></span> - Method in class compbio.engine.client.<a href="../compbio/engine/client/SkeletalExecutable.html" title="class in compbio.engine.client">SkeletalExecutable</a></dt>
 200 <dd>&nbsp;</dd>
 201 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/StatisticManager.html#toString--">toString()</a></span> - Method in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/StatisticManager.html" title="class in compbio.engine.cluster.drmaa">StatisticManager</a></dt>
 202 <dd>&nbsp;</dd>
 203 <dt><span class="memberNameLink"><a href="../compbio/engine/FilePuller.html#toString--">toString()</a></span> - Method in class compbio.engine.<a href="../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</a></dt>
 204 <dd>&nbsp;</dd>
 205 <dt><span class="memberNameLink"><a href="../compbio/engine/Job.html#toString--">toString()</a></span> - Method in class compbio.engine.<a href="../compbio/engine/Job.html" title="class in compbio.engine">Job</a></dt>
 206 <dd>&nbsp;</dd>
 207 <dt><span class="memberNameLink"><a href="../compbio/metadata/ChunkHolder.html#toString--">toString()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/ChunkHolder.html" title="class in compbio.metadata">ChunkHolder</a></dt>
 208 <dd>&nbsp;</dd>
 209 <dt><span class="memberNameLink"><a href="../compbio/metadata/Limit.html#toString--">toString()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</a></dt>
 210 <dd>&nbsp;</dd>
 211 <dt><span class="memberNameLink"><a href="../compbio/metadata/LimitsManager.html#toString--">toString()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</a></dt>
 212 <dd>&nbsp;</dd>
 213 <dt><span class="memberNameLink"><a href="../compbio/metadata/Option.html#toString--">toString()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/Option.html" title="class in compbio.metadata">Option</a></dt>
 214 <dd>&nbsp;</dd>
 215 <dt><span class="memberNameLink"><a href="../compbio/metadata/Parameter.html#toString--">toString()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a></dt>
 216 <dd>&nbsp;</dd>
 217 <dt><span class="memberNameLink"><a href="../compbio/metadata/Preset.html#toString--">toString()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a></dt>
 218 <dd>&nbsp;</dd>
 219 <dt><span class="memberNameLink"><a href="../compbio/metadata/PresetManager.html#toString--">toString()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</a></dt>
 220 <dd>&nbsp;</dd>
 221 <dt><span class="memberNameLink"><a href="../compbio/metadata/RunnerConfig.html#toString--">toString()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/RunnerConfig.html" title="class in compbio.metadata">RunnerConfig</a></dt>
 222 <dd>&nbsp;</dd>
 223 <dt><span class="memberNameLink"><a href="../compbio/metadata/ValueConstrain.html#toString--">toString()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/ValueConstrain.html" title="class in compbio.metadata">ValueConstrain</a></dt>
 224 <dd>&nbsp;</dd>
 225 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/JobStat.html#toString--">toString()</a></span> - Method in class compbio.stat.collector.<a href="../compbio/stat/collector/JobStat.html" title="class in compbio.stat.collector">JobStat</a></dt>
 226 <dd>&nbsp;</dd>
 227 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/StatProcessor.html#toString--">toString()</a></span> - Method in class compbio.stat.collector.<a href="../compbio/stat/collector/StatProcessor.html" title="class in compbio.stat.collector">StatProcessor</a></dt>
 228 <dd>&nbsp;</dd>
 229 <dt><span class="memberNameLink"><a href="../compbio/stat/servlet/ServiceTestResult.html#toString--">toString()</a></span> - Method in class compbio.stat.servlet.<a href="../compbio/stat/servlet/ServiceTestResult.html" title="class in compbio.stat.servlet">ServiceTestResult</a></dt>
 230 <dd>&nbsp;</dd>
 231 <dt><span class="memberNameLink"><a href="../compbio/stat/servlet/util/StatCollection.html#toString--">toString()</a></span> - Method in class compbio.stat.servlet.util.<a href="../compbio/stat/servlet/util/StatCollection.html" title="class in compbio.stat.servlet.util">StatCollection</a></dt>
 232 <dd>&nbsp;</dd>
 233 <dt><span class="memberNameLink"><a href="../compbio/ws/client/Services.ServiceInfo.html#toString--">toString()</a></span> - Method in class compbio.ws.client.<a href="../compbio/ws/client/Services.ServiceInfo.html" title="class in compbio.ws.client">Services.ServiceInfo</a></dt>
 234 <dd>&nbsp;</dd>
 235 <dt><span class="memberNameLink"><a href="../compbio/ws/client/Services.html#toString-java.util.Set-">toString(Set&lt;Services&gt;)</a></span> - Static method in enum compbio.ws.client.<a href="../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</a></dt>
 236 <dd>&nbsp;</dd>
 237 <dt><span class="memberNameLink"><a href="../compbio/stat/servlet/util/Totals.html#total">total</a></span> - Variable in class compbio.stat.servlet.util.<a href="../compbio/stat/servlet/util/Totals.html" title="class in compbio.stat.servlet.util">Totals</a></dt>
 238 <dd>&nbsp;</dd>
 239 <dt><a href="../compbio/stat/servlet/util/Totals.html" title="class in compbio.stat.servlet.util"><span class="typeNameLink">Totals</span></a> - Class in <a href="../compbio/stat/servlet/util/package-summary.html">compbio.stat.servlet.util</a></dt>
 240 <dd>&nbsp;</dd>
 241 <dt><span class="memberNameLink"><a href="../compbio/stat/servlet/util/Totals.html#Totals--">Totals()</a></span> - Constructor for class compbio.stat.servlet.util.<a href="../compbio/stat/servlet/util/Totals.html" title="class in compbio.stat.servlet.util">Totals</a></dt>
 242 <dd>&nbsp;</dd>
 243 <dt><span class="memberNameLink"><a href="../compbio/engine/local/LocalExecutorService.html#totalTime">totalTime</a></span> - Variable in class compbio.engine.local.<a href="../compbio/engine/local/LocalExecutorService.html" title="class in compbio.engine.local">LocalExecutorService</a></dt>
 244 <dd>&nbsp;</dd>
 245 <dt><span class="memberNameLink"><a href="../compbio/ws/server/GAUtils.html#TRACKER">TRACKER</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/GAUtils.html" title="class in compbio.ws.server">GAUtils</a></dt>
 246 <dd>&nbsp;</dd>
 247 <dt><span class="memberNameLink"><a href="../compbio/runner/msa/ClustalW.html#TREE_FILE_EXT">TREE_FILE_EXT</a></span> - Static variable in class compbio.runner.msa.<a href="../compbio/runner/msa/ClustalW.html" title="class in compbio.runner.msa">ClustalW</a></dt>
 248 <dd>&nbsp;</dd>
 249 <dt><span class="memberNameLink"><a href="../compbio/engine/local/StreamGobbler.html#type">type</a></span> - Variable in class compbio.engine.local.<a href="../compbio/engine/local/StreamGobbler.html" title="class in compbio.engine.local">StreamGobbler</a></dt>
 250 <dd>&nbsp;</dd>
 251 <dt><span class="memberNameLink"><a href="../compbio/metadata/ValueConstrain.html#type">type</a></span> - Variable in class compbio.metadata.<a href="../compbio/metadata/ValueConstrain.html" title="class in compbio.metadata">ValueConstrain</a></dt>
 252 <dd>&nbsp;</dd>
 253 <dt><span class="memberNameLink"><a href="../compbio/metadata/ValueConstrain.Type.html#Type--">Type()</a></span> - Constructor for enum compbio.metadata.<a href="../compbio/metadata/ValueConstrain.Type.html" title="enum in compbio.metadata">ValueConstrain.Type</a></dt>
 254 <dd>&nbsp;</dd>
 255 </dl>
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