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  75 <h2 class="title">V</h2>
  76 <dl>
  77 <dt><span class="memberNameLink"><a href="../compbio/data/msa/JABAService.html#V2_SERVICE_NAMESPACE">V2_SERVICE_NAMESPACE</a></span> - Static variable in interface compbio.data.msa.<a href="../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</a></dt>
  78 <dd>&nbsp;</dd>
  79 <dt><span class="memberNameLink"><a href="../compbio/data/msa/JABAService.html#V3_SERVICE_NAMESPACE">V3_SERVICE_NAMESPACE</a></span> - Static variable in interface compbio.data.msa.<a href="../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</a></dt>
  80 <dd>&nbsp;</dd>
  81 <dt><span class="memberNameLink"><a href="../compbio/engine/conf/RunnerConfigMarshaller.html#validate-javax.xml.validation.Validator-java.lang.String-">validate(Validator, String)</a></span> - Static method in class compbio.engine.conf.<a href="../compbio/engine/conf/RunnerConfigMarshaller.html" title="class in compbio.engine.conf">RunnerConfigMarshaller</a></dt>
  82 <dd>&nbsp;</dd>
  83 <dt><span class="memberNameLink"><a href="../compbio/metadata/Limit.html#validate--">validate()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</a></dt>
  84 <dd>&nbsp;</dd>
  85 <dt><span class="memberNameLink"><a href="../compbio/metadata/LimitsManager.html#validate-compbio.metadata.PresetManager-">validate(PresetManager&lt;T&gt;)</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</a></dt>
  86 <dd>
  87 <div class="block">Validate Limits</div>
  88 </dd>
  89 <dt><span class="memberNameLink"><a href="../compbio/metadata/Option.html#validate--">validate()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/Option.html" title="class in compbio.metadata">Option</a></dt>
  90 <dd>
  91 <div class="block">Validate the option</div>
  92 </dd>
  93 <dt><span class="memberNameLink"><a href="../compbio/metadata/Parameter.html#validate--">validate()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a></dt>
  94 <dd>&nbsp;</dd>
  95 <dt><span class="memberNameLink"><a href="../compbio/metadata/PresetManager.html#validate-compbio.metadata.RunnerConfig-">validate(RunnerConfig&lt;T&gt;)</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</a></dt>
  96 <dd>
  97 <div class="block">Checks whether preset option and parameter are defined in RunnerConfig
  98  object.</div>
  99 </dd>
 100 <dt><span class="memberNameLink"><a href="../compbio/metadata/RunnerConfig.html#validate--">validate()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/RunnerConfig.html" title="class in compbio.metadata">RunnerConfig</a></dt>
 101 <dd>
 102 <div class="block">Validate the value of the argument.</div>
 103 </dd>
 104 <dt><span class="memberNameLink"><a href="../compbio/metadata/ValueConstrain.html#validate--">validate()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/ValueConstrain.html" title="class in compbio.metadata">ValueConstrain</a></dt>
 105 <dd>
 106 <div class="block">Validate the ValueConstrain object.</div>
 107 </dd>
 108 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/JobStat.html#validate--">validate()</a></span> - Method in class compbio.stat.collector.<a href="../compbio/stat/collector/JobStat.html" title="class in compbio.stat.collector">JobStat</a></dt>
 109 <dd>&nbsp;</dd>
 110 <dt><span class="memberNameLink"><a href="../compbio/ws/server/WSUtil.html#validateAAConInput-java.util.List-">validateAAConInput(List&lt;FastaSequence&gt;)</a></span> - Static method in class compbio.ws.server.<a href="../compbio/ws/server/WSUtil.html" title="class in compbio.ws.server">WSUtil</a></dt>
 111 <dd>&nbsp;</dd>
 112 <dt><span class="memberNameLink"><a href="../compbio/engine/client/PathValidator.html#validateDirectory-java.lang.String-">validateDirectory(String)</a></span> - Static method in class compbio.engine.client.<a href="../compbio/engine/client/PathValidator.html" title="class in compbio.engine.client">PathValidator</a></dt>
 113 <dd>&nbsp;</dd>
 114 <dt><span class="memberNameLink"><a href="../compbio/engine/client/PathValidator.html#validateExecutable-java.lang.String-">validateExecutable(String)</a></span> - Static method in class compbio.engine.client.<a href="../compbio/engine/client/PathValidator.html" title="class in compbio.engine.client">PathValidator</a></dt>
 115 <dd>&nbsp;</dd>
 116 <dt><span class="memberNameLink"><a href="../compbio/ws/server/WSUtil.html#validateFastaInput-java.util.List-">validateFastaInput(List&lt;FastaSequence&gt;)</a></span> - Static method in class compbio.ws.server.<a href="../compbio/ws/server/WSUtil.html" title="class in compbio.ws.server">WSUtil</a></dt>
 117 <dd>&nbsp;</dd>
 118 <dt><span class="memberNameLink"><a href="../compbio/ws/server/WSUtil.html#validateJobId-java.lang.String-">validateJobId(String)</a></span> - Static method in class compbio.ws.server.<a href="../compbio/ws/server/WSUtil.html" title="class in compbio.ws.server">WSUtil</a></dt>
 119 <dd>&nbsp;</dd>
 120 <dt><span class="memberNameLink"><a href="../compbio/engine/client/PathValidator.html#validatePathNames-java.util.List-java.lang.String-">validatePathNames(List&lt;String&gt;, String)</a></span> - Static method in class compbio.engine.client.<a href="../compbio/engine/client/PathValidator.html" title="class in compbio.engine.client">PathValidator</a></dt>
 121 <dd>&nbsp;</dd>
 122 <dt><span class="memberNameLink"><a href="../compbio/ws/client/Jws2Client.html#validURL-java.lang.String-">validURL(String)</a></span> - Static method in class compbio.ws.client.<a href="../compbio/ws/client/Jws2Client.html" title="class in compbio.ws.client">Jws2Client</a></dt>
 123 <dd>
 124 <div class="block">Attempt to construct the URL object from the string</div>
 125 </dd>
 126 <dt><span class="memberNameLink"><a href="../compbio/metadata/Parameter.html#validValue">validValue</a></span> - Variable in class compbio.metadata.<a href="../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a></dt>
 127 <dd>&nbsp;</dd>
 128 <dt><span class="memberNameLink"><a href="../compbio/engine/client/CommandBuilder.Parameter.html#value">value</a></span> - Variable in class compbio.engine.client.<a href="../compbio/engine/client/CommandBuilder.Parameter.html" title="class in compbio.engine.client">CommandBuilder.Parameter</a></dt>
 129 <dd>&nbsp;</dd>
 130 <dt><a href="../compbio/metadata/ValueConstrain.html" title="class in compbio.metadata"><span class="typeNameLink">ValueConstrain</span></a> - Class in <a href="../compbio/metadata/package-summary.html">compbio.metadata</a></dt>
 131 <dd>
 132 <div class="block">The type and the lower and upper boundaries for numerical value.</div>
 133 </dd>
 134 <dt><span class="memberNameLink"><a href="../compbio/metadata/ValueConstrain.html#ValueConstrain--">ValueConstrain()</a></span> - Constructor for class compbio.metadata.<a href="../compbio/metadata/ValueConstrain.html" title="class in compbio.metadata">ValueConstrain</a></dt>
 135 <dd>&nbsp;</dd>
 136 <dt><a href="../compbio/metadata/ValueConstrain.Type.html" title="enum in compbio.metadata"><span class="typeNameLink">ValueConstrain.Type</span></a> - Enum in <a href="../compbio/metadata/package-summary.html">compbio.metadata</a></dt>
 137 <dd>&nbsp;</dd>
 138 <dt><span class="memberNameLink"><a href="../compbio/metadata/Option.html#valueExist-java.lang.String-java.util.List-">valueExist(String, List&lt;String&gt;)</a></span> - Static method in class compbio.metadata.<a href="../compbio/metadata/Option.html" title="class in compbio.metadata">Option</a></dt>
 139 <dd>&nbsp;</dd>
 140 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/ConservationMethod.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a></dt>
 141 <dd>
 142 <div class="block">Returns the enum constant of this type with the specified name.</div>
 143 </dd>
 144 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/DisemblResult.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/DisemblResult.html" title="enum in compbio.data.sequence">DisemblResult</a></dt>
 145 <dd>
 146 <div class="block">Returns the enum constant of this type with the specified name.</div>
 147 </dd>
 148 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/DisorderMethod.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/DisorderMethod.html" title="enum in compbio.data.sequence">DisorderMethod</a></dt>
 149 <dd>
 150 <div class="block">Returns the enum constant of this type with the specified name.</div>
 151 </dd>
 152 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/GlobProtResult.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/GlobProtResult.html" title="enum in compbio.data.sequence">GlobProtResult</a></dt>
 153 <dd>
 154 <div class="block">Returns the enum constant of this type with the specified name.</div>
 155 </dd>
 156 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/IUPredResult.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/IUPredResult.html" title="enum in compbio.data.sequence">IUPredResult</a></dt>
 157 <dd>
 158 <div class="block">Returns the enum constant of this type with the specified name.</div>
 159 </dd>
 160 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/Program.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a></dt>
 161 <dd>
 162 <div class="block">Returns the enum constant of this type with the specified name.</div>
 163 </dd>
 164 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/RNAStructReader.AlifoldLine.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a></dt>
 165 <dd>
 166 <div class="block">Returns the enum constant of this type with the specified name.</div>
 167 </dd>
 168 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/RNAStructReader.AlifoldResult.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/RNAStructReader.AlifoldResult.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldResult</a></dt>
 169 <dd>
 170 <div class="block">Returns the enum constant of this type with the specified name.</div>
 171 </dd>
 172 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/RNAStructReader.RNAOut.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/RNAStructReader.RNAOut.html" title="enum in compbio.data.sequence">RNAStructReader.RNAOut</a></dt>
 173 <dd>
 174 <div class="block">Returns the enum constant of this type with the specified name.</div>
 175 </dd>
 176 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/SMERFSConstraints.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence">SMERFSConstraints</a></dt>
 177 <dd>
 178 <div class="block">Returns the enum constant of this type with the specified name.</div>
 179 </dd>
 180 <dt><span class="memberNameLink"><a href="../compbio/engine/client/Executable.ExecProvider.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum compbio.engine.client.<a href="../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</a></dt>
 181 <dd>
 182 <div class="block">Returns the enum constant of this type with the specified name.</div>
 183 </dd>
 184 <dt><span class="memberNameLink"><a href="../compbio/engine/local/StreamGobbler.OutputType.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum compbio.engine.local.<a href="../compbio/engine/local/StreamGobbler.OutputType.html" title="enum in compbio.engine.local">StreamGobbler.OutputType</a></dt>
 185 <dd>
 186 <div class="block">Returns the enum constant of this type with the specified name.</div>
 187 </dd>
 188 <dt><span class="memberNameLink"><a href="../compbio/metadata/JobStatus.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum compbio.metadata.<a href="../compbio/metadata/JobStatus.html" title="enum in compbio.metadata">JobStatus</a></dt>
 189 <dd>
 190 <div class="block">Returns the enum constant of this type with the specified name.</div>
 191 </dd>
 192 <dt><span class="memberNameLink"><a href="../compbio/metadata/ValueConstrain.Type.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum compbio.metadata.<a href="../compbio/metadata/ValueConstrain.Type.html" title="enum in compbio.metadata">ValueConstrain.Type</a></dt>
 193 <dd>
 194 <div class="block">Returns the enum constant of this type with the specified name.</div>
 195 </dd>
 196 <dt><span class="memberNameLink"><a href="../compbio/stat/servlet/util/StatCollection.Stattype.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum compbio.stat.servlet.util.<a href="../compbio/stat/servlet/util/StatCollection.Stattype.html" title="enum in compbio.stat.servlet.util">StatCollection.Stattype</a></dt>
 197 <dd>
 198 <div class="block">Returns the enum constant of this type with the specified name.</div>
 199 </dd>
 200 <dt><span class="memberNameLink"><a href="../compbio/ws/client/Services.html#valueOf-java.lang.String-">valueOf(String)</a></span> - Static method in enum compbio.ws.client.<a href="../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</a></dt>
 201 <dd>
 202 <div class="block">Returns the enum constant of this type with the specified name.</div>
 203 </dd>
 204 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/ConservationMethod.html#values--">values()</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</a></dt>
 205 <dd>
 206 <div class="block">Returns an array containing the constants of this enum type, in
 207 the order they are declared.</div>
 208 </dd>
 209 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/DisemblResult.html#values--">values()</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/DisemblResult.html" title="enum in compbio.data.sequence">DisemblResult</a></dt>
 210 <dd>
 211 <div class="block">Returns an array containing the constants of this enum type, in
 212 the order they are declared.</div>
 213 </dd>
 214 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/DisorderMethod.html#values--">values()</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/DisorderMethod.html" title="enum in compbio.data.sequence">DisorderMethod</a></dt>
 215 <dd>
 216 <div class="block">Returns an array containing the constants of this enum type, in
 217 the order they are declared.</div>
 218 </dd>
 219 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/GlobProtResult.html#values--">values()</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/GlobProtResult.html" title="enum in compbio.data.sequence">GlobProtResult</a></dt>
 220 <dd>
 221 <div class="block">Returns an array containing the constants of this enum type, in
 222 the order they are declared.</div>
 223 </dd>
 224 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/IUPredResult.html#values--">values()</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/IUPredResult.html" title="enum in compbio.data.sequence">IUPredResult</a></dt>
 225 <dd>
 226 <div class="block">Returns an array containing the constants of this enum type, in
 227 the order they are declared.</div>
 228 </dd>
 229 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/Program.html#values--">values()</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</a></dt>
 230 <dd>
 231 <div class="block">Returns an array containing the constants of this enum type, in
 232 the order they are declared.</div>
 233 </dd>
 234 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/RNAStructReader.AlifoldLine.html#values--">values()</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldLine</a></dt>
 235 <dd>
 236 <div class="block">Returns an array containing the constants of this enum type, in
 237 the order they are declared.</div>
 238 </dd>
 239 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/RNAStructReader.AlifoldResult.html#values--">values()</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/RNAStructReader.AlifoldResult.html" title="enum in compbio.data.sequence">RNAStructReader.AlifoldResult</a></dt>
 240 <dd>
 241 <div class="block">Returns an array containing the constants of this enum type, in
 242 the order they are declared.</div>
 243 </dd>
 244 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/RNAStructReader.RNAOut.html#values--">values()</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/RNAStructReader.RNAOut.html" title="enum in compbio.data.sequence">RNAStructReader.RNAOut</a></dt>
 245 <dd>
 246 <div class="block">Returns an array containing the constants of this enum type, in
 247 the order they are declared.</div>
 248 </dd>
 249 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/SMERFSConstraints.html#values--">values()</a></span> - Static method in enum compbio.data.sequence.<a href="../compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence">SMERFSConstraints</a></dt>
 250 <dd>
 251 <div class="block">Returns an array containing the constants of this enum type, in
 252 the order they are declared.</div>
 253 </dd>
 254 <dt><span class="memberNameLink"><a href="../compbio/engine/client/Executable.ExecProvider.html#values--">values()</a></span> - Static method in enum compbio.engine.client.<a href="../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</a></dt>
 255 <dd>
 256 <div class="block">Returns an array containing the constants of this enum type, in
 257 the order they are declared.</div>
 258 </dd>
 259 <dt><span class="memberNameLink"><a href="../compbio/engine/local/StreamGobbler.OutputType.html#values--">values()</a></span> - Static method in enum compbio.engine.local.<a href="../compbio/engine/local/StreamGobbler.OutputType.html" title="enum in compbio.engine.local">StreamGobbler.OutputType</a></dt>
 260 <dd>
 261 <div class="block">Returns an array containing the constants of this enum type, in
 262 the order they are declared.</div>
 263 </dd>
 264 <dt><span class="memberNameLink"><a href="../compbio/metadata/JobStatus.html#values--">values()</a></span> - Static method in enum compbio.metadata.<a href="../compbio/metadata/JobStatus.html" title="enum in compbio.metadata">JobStatus</a></dt>
 265 <dd>
 266 <div class="block">Returns an array containing the constants of this enum type, in
 267 the order they are declared.</div>
 268 </dd>
 269 <dt><span class="memberNameLink"><a href="../compbio/metadata/ValueConstrain.Type.html#values--">values()</a></span> - Static method in enum compbio.metadata.<a href="../compbio/metadata/ValueConstrain.Type.html" title="enum in compbio.metadata">ValueConstrain.Type</a></dt>
 270 <dd>
 271 <div class="block">Returns an array containing the constants of this enum type, in
 272 the order they are declared.</div>
 273 </dd>
 274 <dt><span class="memberNameLink"><a href="../compbio/stat/servlet/util/StatCollection.Stattype.html#values--">values()</a></span> - Static method in enum compbio.stat.servlet.util.<a href="../compbio/stat/servlet/util/StatCollection.Stattype.html" title="enum in compbio.stat.servlet.util">StatCollection.Stattype</a></dt>
 275 <dd>
 276 <div class="block">Returns an array containing the constants of this enum type, in
 277 the order they are declared.</div>
 278 </dd>
 279 <dt><span class="memberNameLink"><a href="../compbio/ws/client/Services.html#values--">values()</a></span> - Static method in enum compbio.ws.client.<a href="../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</a></dt>
 280 <dd>
 281 <div class="block">Returns an array containing the constants of this enum type, in
 282 the order they are declared.</div>
 283 </dd>
 284 <dt><span class="memberNameLink"><a href="../compbio/stat/servlet/ServiceTestResult.html#version">version</a></span> - Variable in class compbio.stat.servlet.<a href="../compbio/stat/servlet/ServiceTestResult.html" title="class in compbio.stat.servlet">ServiceTestResult</a></dt>
 285 <dd>&nbsp;</dd>
 286 <dt><span class="memberNameLink"><a href="../compbio/ws/client/Services.ServiceInfo.html#version">version</a></span> - Variable in class compbio.ws.client.<a href="../compbio/ws/client/Services.ServiceInfo.html" title="class in compbio.ws.client">Services.ServiceInfo</a></dt>
 287 <dd>&nbsp;</dd>
 288 <dt><span class="memberNameLink"><a href="../compbio/ws/server/GAUtils.html#VERSION_TYPE">VERSION_TYPE</a></span> - Static variable in class compbio.ws.server.<a href="../compbio/ws/server/GAUtils.html" title="class in compbio.ws.server">GAUtils</a></dt>
 289 <dd>&nbsp;</dd>
 290 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/StatisticManager.html#vmem">vmem</a></span> - Variable in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/StatisticManager.html" title="class in compbio.engine.cluster.drmaa">StatisticManager</a></dt>
 291 <dd>&nbsp;</dd>
 292 </dl>
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