website/docs/full_javadoc/index-files/index-23.html

   1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
   2 <!-- NewPage -->
   3 <html lang="en">
   4 <head>
   5 <!-- Generated by javadoc (1.8.0_121) on Fri Apr 21 15:32:51 BST 2017 -->
   6 <title>W-Index</title>
   7 <meta name="date" content="2017-04-21">
   8 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
   9 <script type="text/javascript" src="../script.js"></script>
  10 </head>
  11 <body>
  12 <script type="text/javascript"><!--
  13     try {
  14         if (location.href.indexOf('is-external=true') == -1) {
  15             parent.document.title="W-Index";
  16         }
  17     }
  18     catch(err) {
  19     }
  20 //-->
  21 </script>
  22 <noscript>
  23 <div>JavaScript is disabled on your browser.</div>
  24 </noscript>
  25 <!-- ========= START OF TOP NAVBAR ======= -->
  26 <div class="topNav"><a name="navbar.top">
  27 <!--   -->
  28 </a>
  29 <div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
  30 <a name="navbar.top.firstrow">
  31 <!--   -->
  32 </a>
  33 <ul class="navList" title="Navigation">
  34 <li><a href="../overview-summary.html">Overview</a></li>
  35 <li>Package</li>
  36 <li>Class</li>
  37 <li>Use</li>
  38 <li><a href="../overview-tree.html">Tree</a></li>
  39 <li><a href="../deprecated-list.html">Deprecated</a></li>
  40 <li class="navBarCell1Rev">Index</li>
  41 <li><a href="../help-doc.html">Help</a></li>
  42 </ul>
  43 </div>
  44 <div class="subNav">
  45 <ul class="navList">
  46 <li><a href="index-22.html">Prev Letter</a></li>
  47 <li><a href="index-24.html">Next Letter</a></li>
  48 </ul>
  49 <ul class="navList">
  50 <li><a href="../index.html?index-files/index-23.html" target="_top">Frames</a></li>
  51 <li><a href="index-23.html" target="_top">No&nbsp;Frames</a></li>
  52 </ul>
  53 <ul class="navList" id="allclasses_navbar_top">
  54 <li><a href="../allclasses-noframe.html">All&nbsp;Classes</a></li>
  55 </ul>
  56 <div>
  57 <script type="text/javascript"><!--
  58   allClassesLink = document.getElementById("allclasses_navbar_top");
  59   if(window==top) {
  60     allClassesLink.style.display = "block";
  61   }
  62   else {
  63     allClassesLink.style.display = "none";
  64   }
  65   //-->
  66 </script>
  67 </div>
  68 <a name="skip.navbar.top">
  69 <!--   -->
  70 </a></div>
  71 <!-- ========= END OF TOP NAVBAR ========= -->
  72 <div class="contentContainer"><a href="index-1.html">A</a>&nbsp;<a href="index-2.html">B</a>&nbsp;<a href="index-3.html">C</a>&nbsp;<a href="index-4.html">D</a>&nbsp;<a href="index-5.html">E</a>&nbsp;<a href="index-6.html">F</a>&nbsp;<a href="index-7.html">G</a>&nbsp;<a href="index-8.html">H</a>&nbsp;<a href="index-9.html">I</a>&nbsp;<a href="index-10.html">J</a>&nbsp;<a href="index-11.html">K</a>&nbsp;<a href="index-12.html">L</a>&nbsp;<a href="index-13.html">M</a>&nbsp;<a href="index-14.html">N</a>&nbsp;<a href="index-15.html">O</a>&nbsp;<a href="index-16.html">P</a>&nbsp;<a href="index-17.html">Q</a>&nbsp;<a href="index-18.html">R</a>&nbsp;<a href="index-19.html">S</a>&nbsp;<a href="index-20.html">T</a>&nbsp;<a href="index-21.html">U</a>&nbsp;<a href="index-22.html">V</a>&nbsp;<a href="index-23.html">W</a>&nbsp;<a href="index-24.html">_</a>&nbsp;<a name="I:W">
  73 <!--   -->
  74 </a>
  75 <h2 class="title">W</h2>
  76 <dl>
  77 <dt><span class="memberNameLink"><a href="../compbio/engine/FilePuller.html#waitForFile-long-">waitForFile(long)</a></span> - Method in class compbio.engine.<a href="../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</a></dt>
  78 <dd>&nbsp;</dd>
  79 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/ClusterRunner.html#waitForJob-java.lang.String-">waitForJob(String)</a></span> - Method in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/ClusterRunner.html" title="class in compbio.engine.cluster.drmaa">ClusterRunner</a></dt>
  80 <dd>&nbsp;</dd>
  81 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/ClusterSession.html#waitForJob-java.lang.String-">waitForJob(String)</a></span> - Method in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/ClusterSession.html" title="class in compbio.engine.cluster.drmaa">ClusterSession</a></dt>
  82 <dd>&nbsp;</dd>
  83 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/ClusterSession.html#waitForJob-java.lang.String-long-">waitForJob(String, long)</a></span> - Method in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/ClusterSession.html" title="class in compbio.engine.cluster.drmaa">ClusterSession</a></dt>
  84 <dd>&nbsp;</dd>
  85 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/JobRunner.html#waitForJob-java.lang.String-">waitForJob(String)</a></span> - Method in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/JobRunner.html" title="class in compbio.engine.cluster.drmaa">JobRunner</a></dt>
  86 <dd>&nbsp;</dd>
  87 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/ClusterEngineUtil.html#waitForResult-compbio.engine.cluster.drmaa.ClusterSession-java.lang.String-">waitForResult(ClusterSession, String)</a></span> - Static method in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/ClusterEngineUtil.html" title="class in compbio.engine.cluster.drmaa">ClusterEngineUtil</a></dt>
  88 <dd>&nbsp;</dd>
  89 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/ClusterRunner.html#waitForResult--">waitForResult()</a></span> - Method in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/ClusterRunner.html" title="class in compbio.engine.cluster.drmaa">ClusterRunner</a></dt>
  90 <dd>&nbsp;</dd>
  91 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/ClusterUtil.html#waitForResult-compbio.engine.cluster.drmaa.ClusterSession-java.lang.String-">waitForResult(ClusterSession, String)</a></span> - Static method in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/ClusterUtil.html" title="class in compbio.engine.cluster.drmaa">ClusterUtil</a></dt>
  92 <dd>&nbsp;</dd>
  93 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/JobRunner.html#waitForResult--">waitForResult()</a></span> - Method in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/JobRunner.html" title="class in compbio.engine.cluster.drmaa">JobRunner</a></dt>
  94 <dd>&nbsp;</dd>
  95 <dt><span class="memberNameLink"><a href="../compbio/engine/local/LocalRunner.html#waitForResult--">waitForResult()</a></span> - Method in class compbio.engine.local.<a href="../compbio/engine/local/LocalRunner.html" title="class in compbio.engine.local">LocalRunner</a></dt>
  96 <dd>&nbsp;</dd>
  97 <dt><span class="memberNameLink"><a href="../compbio/engine/SyncExecutor.html#waitForResult--">waitForResult()</a></span> - Method in interface compbio.engine.<a href="../compbio/engine/SyncExecutor.html" title="interface in compbio.engine">SyncExecutor</a></dt>
  98 <dd>
  99 <div class="block">Call to this method block for as long as it is required for an executable to finish its job.</div>
 100 </dd>
 101 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/StatisticManager.html#wasAborted--">wasAborted()</a></span> - Method in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/StatisticManager.html" title="class in compbio.engine.cluster.drmaa">StatisticManager</a></dt>
 102 <dd>&nbsp;</dd>
 103 <dt><span class="memberNameLink"><a href="../compbio/engine/FilePuller.html#watcher">watcher</a></span> - Variable in class compbio.engine.<a href="../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</a></dt>
 104 <dd>&nbsp;</dd>
 105 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/JobStat.html#webService">webService</a></span> - Variable in class compbio.stat.collector.<a href="../compbio/stat/collector/JobStat.html" title="class in compbio.stat.collector">JobStat</a></dt>
 106 <dd>&nbsp;</dd>
 107 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/SequenceUtil.html#WHITE_SPACE">WHITE_SPACE</a></span> - Static variable in class compbio.data.sequence.<a href="../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence">SequenceUtil</a></dt>
 108 <dd>
 109 <div class="block">A whitespace character: [\t\n\x0B\f\r]</div>
 110 </dd>
 111 <dt><span class="memberNameLink"><a href="../compbio/engine/client/ConfExecutable.html#workDirectory">workDirectory</a></span> - Variable in class compbio.engine.client.<a href="../compbio/engine/client/ConfExecutable.html" title="class in compbio.engine.client">ConfExecutable</a></dt>
 112 <dd>&nbsp;</dd>
 113 <dt><span class="memberNameLink"><a href="../compbio/engine/client/RunConfiguration.html#workDirectory">workDirectory</a></span> - Variable in class compbio.engine.client.<a href="../compbio/engine/client/RunConfiguration.html" title="class in compbio.engine.client">RunConfiguration</a></dt>
 114 <dd>
 115 <div class="block">Working directory</div>
 116 </dd>
 117 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/ClusterRunner.html#workDirectory">workDirectory</a></span> - Variable in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/ClusterRunner.html" title="class in compbio.engine.cluster.drmaa">ClusterRunner</a></dt>
 118 <dd>&nbsp;</dd>
 119 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/JobRunner.html#workDirectory">workDirectory</a></span> - Variable in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/JobRunner.html" title="class in compbio.engine.cluster.drmaa">JobRunner</a></dt>
 120 <dd>&nbsp;</dd>
 121 <dt><span class="memberNameLink"><a href="../compbio/engine/local/LocalRunner.html#workDirectory">workDirectory</a></span> - Variable in class compbio.engine.local.<a href="../compbio/engine/local/LocalRunner.html" title="class in compbio.engine.local">LocalRunner</a></dt>
 122 <dd>&nbsp;</dd>
 123 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/DirCleaner.html#workDirectory">workDirectory</a></span> - Variable in class compbio.stat.collector.<a href="../compbio/stat/collector/DirCleaner.html" title="class in compbio.stat.collector">DirCleaner</a></dt>
 124 <dd>&nbsp;</dd>
 125 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/ExecutionStatCollector.html#workingDirectory">workingDirectory</a></span> - Variable in class compbio.stat.collector.<a href="../compbio/stat/collector/ExecutionStatCollector.html" title="class in compbio.stat.collector">ExecutionStatCollector</a></dt>
 126 <dd>&nbsp;</dd>
 127 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/Score.html#write-java.util.TreeSet-java.io.Writer-">write(TreeSet&lt;Score&gt;, Writer)</a></span> - Static method in class compbio.data.sequence.<a href="../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a></dt>
 128 <dd>
 129 <div class="block">Outputs the List of Score objects into the Output stream.</div>
 130 </dd>
 131 <dt><span class="memberNameLink"><a href="../compbio/engine/client/RunConfiguration.html#write-compbio.engine.client.RunConfiguration-">write(RunConfiguration)</a></span> - Static method in class compbio.engine.client.<a href="../compbio/engine/client/RunConfiguration.html" title="class in compbio.engine.client">RunConfiguration</a></dt>
 132 <dd>&nbsp;</dd>
 133 <dt><span class="memberNameLink"><a href="../compbio/engine/conf/RunnerConfigMarshaller.html#write-java.lang.Object-java.io.OutputStream-">write(Object, OutputStream)</a></span> - Method in class compbio.engine.conf.<a href="../compbio/engine/conf/RunnerConfigMarshaller.html" title="class in compbio.engine.conf">RunnerConfigMarshaller</a></dt>
 134 <dd>&nbsp;</dd>
 135 <dt><span class="memberNameLink"><a href="../compbio/engine/conf/RunnerConfigMarshaller.html#writeAndValidate-java.lang.Object-java.lang.String-java.io.OutputStream-">writeAndValidate(Object, String, OutputStream)</a></span> - Method in class compbio.engine.conf.<a href="../compbio/engine/conf/RunnerConfigMarshaller.html" title="class in compbio.engine.conf">RunnerConfigMarshaller</a></dt>
 136 <dd>&nbsp;</dd>
 137 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/SequenceUtil.html#writeClustal-java.io.OutputStream-java.util.List-char-">writeClustal(OutputStream, List&lt;FastaSequence&gt;, char)</a></span> - Static method in class compbio.data.sequence.<a href="../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence">SequenceUtil</a></dt>
 138 <dd>&nbsp;</dd>
 139 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/ClustalAlignmentUtil.html#writeClustalAlignment-java.io.Writer-compbio.data.sequence.Alignment-">writeClustalAlignment(Writer, Alignment)</a></span> - Static method in class compbio.data.sequence.<a href="../compbio/data/sequence/ClustalAlignmentUtil.html" title="class in compbio.data.sequence">ClustalAlignmentUtil</a></dt>
 140 <dd>
 141 <div class="block">Write Clustal formatted alignment Limitations: does not record the
 142  consensus.</div>
 143 </dd>
 144 <dt><span class="memberNameLink"><a href="../compbio/runner/RunnerUtil.html#writeClustalInput-java.util.List-compbio.engine.client.ConfiguredExecutable-char-">writeClustalInput(List&lt;FastaSequence&gt;, ConfiguredExecutable&lt;?&gt;, char)</a></span> - Static method in class compbio.runner.<a href="../compbio/runner/RunnerUtil.html" title="class in compbio.runner">RunnerUtil</a></dt>
 145 <dd>&nbsp;</dd>
 146 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/SequenceUtil.html#writeFasta-java.io.OutputStream-java.util.List-int-">writeFasta(OutputStream, List&lt;FastaSequence&gt;, int)</a></span> - Static method in class compbio.data.sequence.<a href="../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence">SequenceUtil</a></dt>
 147 <dd>
 148 <div class="block">Writes list of FastaSequeces into the outstream formatting the sequence
 149  so that it contains width chars on each line</div>
 150 </dd>
 151 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/SequenceUtil.html#writeFasta-java.io.OutputStream-java.util.List-">writeFasta(OutputStream, List&lt;FastaSequence&gt;)</a></span> - Static method in class compbio.data.sequence.<a href="../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence">SequenceUtil</a></dt>
 152 <dd>
 153 <div class="block">Writes FastaSequence in the file, each sequence will take one line only</div>
 154 </dd>
 155 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/SequenceUtil.html#writeFastaKeepTheStream-java.io.OutputStream-java.util.List-int-">writeFastaKeepTheStream(OutputStream, List&lt;FastaSequence&gt;, int)</a></span> - Static method in class compbio.data.sequence.<a href="../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence">SequenceUtil</a></dt>
 156 <dd>&nbsp;</dd>
 157 <dt><span class="memberNameLink"><a href="../compbio/engine/client/EngineUtil.html#writeFile-java.lang.String-java.lang.String-java.lang.String-boolean-">writeFile(String, String, String, boolean)</a></span> - Static method in class compbio.engine.client.<a href="../compbio/engine/client/EngineUtil.html" title="class in compbio.engine.client">EngineUtil</a></dt>
 158 <dd>&nbsp;</dd>
 159 <dt><span class="memberNameLink"><a href="../compbio/engine/client/Util.html#writeFile-java.lang.String-java.lang.String-java.lang.String-boolean-">writeFile(String, String, String, boolean)</a></span> - Static method in class compbio.engine.client.<a href="../compbio/engine/client/Util.html" title="class in compbio.engine.client">Util</a></dt>
 160 <dd>&nbsp;</dd>
 161 <dt><span class="memberNameLink"><a href="../compbio/runner/RunnerUtil.html#writeInput-java.util.List-compbio.engine.client.ConfiguredExecutable-">writeInput(List&lt;FastaSequence&gt;, ConfiguredExecutable&lt;?&gt;)</a></span> - Static method in class compbio.runner.<a href="../compbio/runner/RunnerUtil.html" title="class in compbio.runner">RunnerUtil</a></dt>
 162 <dd>&nbsp;</dd>
 163 <dt><span class="memberNameLink"><a href="../compbio/runner/Util.html#writeInput-java.util.List-compbio.engine.client.ConfiguredExecutable-">writeInput(List&lt;FastaSequence&gt;, ConfiguredExecutable&lt;?&gt;)</a></span> - Static method in class compbio.runner.<a href="../compbio/runner/Util.html" title="class in compbio.runner">Util</a></dt>
 164 <dd>&nbsp;</dd>
 165 <dt><span class="memberNameLink"><a href="../compbio/engine/client/EngineUtil.html#writeMarker-java.lang.String-compbio.metadata.JobStatus-">writeMarker(String, JobStatus)</a></span> - Static method in class compbio.engine.client.<a href="../compbio/engine/client/EngineUtil.html" title="class in compbio.engine.client">EngineUtil</a></dt>
 166 <dd>&nbsp;</dd>
 167 <dt><span class="memberNameLink"><a href="../compbio/engine/client/Util.html#writeMarker-java.lang.String-compbio.metadata.JobStatus-">writeMarker(String, JobStatus)</a></span> - Static method in class compbio.engine.client.<a href="../compbio/engine/client/Util.html" title="class in compbio.engine.client">Util</a></dt>
 168 <dd>&nbsp;</dd>
 169 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/ScoreManager.ScoreHolder.html#writeOut-java.io.Writer-">writeOut(Writer)</a></span> - Method in class compbio.data.sequence.<a href="../compbio/data/sequence/ScoreManager.ScoreHolder.html" title="class in compbio.data.sequence">ScoreManager.ScoreHolder</a></dt>
 170 <dd>&nbsp;</dd>
 171 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/ScoreManager.html#writeOut-java.io.Writer-">writeOut(Writer)</a></span> - Method in class compbio.data.sequence.<a href="../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></dt>
 172 <dd>&nbsp;</dd>
 173 <dt><span class="memberNameLink"><a href="../compbio/ws/client/AAConClient.html#writeOut-java.io.Writer-compbio.data.sequence.ScoreManager-">writeOut(Writer, ScoreManager)</a></span> - Static method in class compbio.ws.client.<a href="../compbio/ws/client/AAConClient.html" title="class in compbio.ws.client">AAConClient</a></dt>
 174 <dd>
 175 <div class="block">Outputs AAcon results into the file represented by the outStream</div>
 176 </dd>
 177 <dt><span class="memberNameLink"><a href="../compbio/ws/client/IOHelper.html#writeOut-java.io.Writer-compbio.data.sequence.Alignment-">writeOut(Writer, Alignment)</a></span> - Static method in class compbio.ws.client.<a href="../compbio/ws/client/IOHelper.html" title="class in compbio.ws.client">IOHelper</a></dt>
 178 <dd>
 179 <div class="block">Outputs clustal formatted alignment into the file represented by the
 180  outStream</div>
 181 </dd>
 182 <dt><span class="memberNameLink"><a href="../compbio/ws/client/IOHelper.html#writeOut-java.io.Writer-compbio.data.sequence.ScoreManager-">writeOut(Writer, ScoreManager)</a></span> - Static method in class compbio.ws.client.<a href="../compbio/ws/client/IOHelper.html" title="class in compbio.ws.client">IOHelper</a></dt>
 183 <dd>
 184 <div class="block">Outputs AAcon results into the file represented by the outStream</div>
 185 </dd>
 186 <dt><span class="memberNameLink"><a href="../compbio/ws/client/WSTester.html#writer">writer</a></span> - Variable in class compbio.ws.client.<a href="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</a></dt>
 187 <dd>&nbsp;</dd>
 188 <dt><span class="memberNameLink"><a href="../compbio/engine/client/EngineUtil.html#writeStatFile-java.lang.String-java.lang.String-">writeStatFile(String, String)</a></span> - Static method in class compbio.engine.client.<a href="../compbio/engine/client/EngineUtil.html" title="class in compbio.engine.client">EngineUtil</a></dt>
 189 <dd>&nbsp;</dd>
 190 <dt><span class="memberNameLink"><a href="../compbio/engine/client/Util.html#writeStatFile-java.lang.String-java.lang.String-">writeStatFile(String, String)</a></span> - Static method in class compbio.engine.client.<a href="../compbio/engine/client/Util.html" title="class in compbio.engine.client">Util</a></dt>
 191 <dd>&nbsp;</dd>
 192 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/ExecutionStatCollector.html#writeStatToDB--">writeStatToDB()</a></span> - Method in class compbio.stat.collector.<a href="../compbio/stat/collector/ExecutionStatCollector.html" title="class in compbio.stat.collector">ExecutionStatCollector</a></dt>
 193 <dd>&nbsp;</dd>
 194 <dt><a href="../compbio/metadata/WrongParameterException.html" title="class in compbio.metadata"><span class="typeNameLink">WrongParameterException</span></a> - Exception in <a href="../compbio/metadata/package-summary.html">compbio.metadata</a></dt>
 195 <dd>
 196 <div class="block">WrongParameterException is thrown wherever the <a href="../compbio/metadata/RunnerConfig.html" title="class in compbio.metadata"><code>RunnerConfig</code></a> object
 197  does not match the actual runnable or then attempting to set the value of
 198  <a href="../compbio/metadata/Argument.html" title="interface in compbio.metadata"><code>Argument</code></a> to invalid value.</div>
 199 </dd>
 200 <dt><span class="memberNameLink"><a href="../compbio/metadata/WrongParameterException.html#WrongParameterException-compbio.metadata.Option-">WrongParameterException(Option&lt;?&gt;)</a></span> - Constructor for exception compbio.metadata.<a href="../compbio/metadata/WrongParameterException.html" title="class in compbio.metadata">WrongParameterException</a></dt>
 201 <dd>&nbsp;</dd>
 202 <dt><span class="memberNameLink"><a href="../compbio/metadata/WrongParameterException.html#WrongParameterException-java.lang.String-">WrongParameterException(String)</a></span> - Constructor for exception compbio.metadata.<a href="../compbio/metadata/WrongParameterException.html" title="class in compbio.metadata">WrongParameterException</a></dt>
 203 <dd>&nbsp;</dd>
 204 <dt><span class="memberNameLink"><a href="../compbio/metadata/WrongParameterException.html#WrongParameterException-java.lang.Throwable-">WrongParameterException(Throwable)</a></span> - Constructor for exception compbio.metadata.<a href="../compbio/metadata/WrongParameterException.html" title="class in compbio.metadata">WrongParameterException</a></dt>
 205 <dd>&nbsp;</dd>
 206 <dt><span class="memberNameLink"><a href="../compbio/metadata/WrongParameterException.html#WrongParameterException-java.lang.String-java.lang.Throwable-">WrongParameterException(String, Throwable)</a></span> - Constructor for exception compbio.metadata.<a href="../compbio/metadata/WrongParameterException.html" title="class in compbio.metadata">WrongParameterException</a></dt>
 207 <dd>&nbsp;</dd>
 208 <dt><a href="../compbio/data/msa/jaxws/WrongParameterExceptionBean.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">WrongParameterExceptionBean</span></a> - Class in <a href="../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</a></dt>
 209 <dd>
 210 <div class="block">This class was generated by the JAX-WS RI.</div>
 211 </dd>
 212 <dt><span class="memberNameLink"><a href="../compbio/data/msa/jaxws/WrongParameterExceptionBean.html#WrongParameterExceptionBean--">WrongParameterExceptionBean()</a></span> - Constructor for class compbio.data.msa.jaxws.<a href="../compbio/data/msa/jaxws/WrongParameterExceptionBean.html" title="class in compbio.data.msa.jaxws">WrongParameterExceptionBean</a></dt>
 213 <dd>&nbsp;</dd>
 214 <dt><span class="memberNameLink"><a href="../compbio/ws/server/RegistryWS.html#wsContext">wsContext</a></span> - Variable in class compbio.ws.server.<a href="../compbio/ws/server/RegistryWS.html" title="class in compbio.ws.server">RegistryWS</a></dt>
 215 <dd>&nbsp;</dd>
 216 <dt><a href="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client"><span class="typeNameLink">WSTester</span></a> - Class in <a href="../compbio/ws/client/package-summary.html">compbio.ws.client</a></dt>
 217 <dd>
 218 <div class="block">Class for testing web services</div>
 219 </dd>
 220 <dt><span class="memberNameLink"><a href="../compbio/ws/client/WSTester.html#WSTester-java.lang.String-java.io.PrintWriter-">WSTester(String, PrintWriter)</a></span> - Constructor for class compbio.ws.client.<a href="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</a></dt>
 221 <dd>
 222 <div class="block">Construct an instance of JABAWS tester</div>
 223 </dd>
 224 <dt><a href="../compbio/ws/server/WSUtil.html" title="class in compbio.ws.server"><span class="typeNameLink">WSUtil</span></a> - Class in <a href="../compbio/ws/server/package-summary.html">compbio.ws.server</a></dt>
 225 <dd>&nbsp;</dd>
 226 <dt><span class="memberNameLink"><a href="../compbio/ws/server/WSUtil.html#WSUtil--">WSUtil()</a></span> - Constructor for class compbio.ws.server.<a href="../compbio/ws/server/WSUtil.html" title="class in compbio.ws.server">WSUtil</a></dt>
 227 <dd>&nbsp;</dd>
 228 </dl>
 229 <a href="index-1.html">A</a>&nbsp;<a href="index-2.html">B</a>&nbsp;<a href="index-3.html">C</a>&nbsp;<a href="index-4.html">D</a>&nbsp;<a href="index-5.html">E</a>&nbsp;<a href="index-6.html">F</a>&nbsp;<a href="index-7.html">G</a>&nbsp;<a href="index-8.html">H</a>&nbsp;<a href="index-9.html">I</a>&nbsp;<a href="index-10.html">J</a>&nbsp;<a href="index-11.html">K</a>&nbsp;<a href="index-12.html">L</a>&nbsp;<a href="index-13.html">M</a>&nbsp;<a href="index-14.html">N</a>&nbsp;<a href="index-15.html">O</a>&nbsp;<a href="index-16.html">P</a>&nbsp;<a href="index-17.html">Q</a>&nbsp;<a href="index-18.html">R</a>&nbsp;<a href="index-19.html">S</a>&nbsp;<a href="index-20.html">T</a>&nbsp;<a href="index-21.html">U</a>&nbsp;<a href="index-22.html">V</a>&nbsp;<a href="index-23.html">W</a>&nbsp;<a href="index-24.html">_</a>&nbsp;</div>
 230 <!-- ======= START OF BOTTOM NAVBAR ====== -->
 231 <div class="bottomNav"><a name="navbar.bottom">
 232 <!--   -->
 233 </a>
 234 <div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
 235 <a name="navbar.bottom.firstrow">
 236 <!--   -->
 237 </a>
 238 <ul class="navList" title="Navigation">
 239 <li><a href="../overview-summary.html">Overview</a></li>
 240 <li>Package</li>
 241 <li>Class</li>
 242 <li>Use</li>
 243 <li><a href="../overview-tree.html">Tree</a></li>
 244 <li><a href="../deprecated-list.html">Deprecated</a></li>
 245 <li class="navBarCell1Rev">Index</li>
 246 <li><a href="../help-doc.html">Help</a></li>
 247 </ul>
 248 </div>
 249 <div class="subNav">
 250 <ul class="navList">
 251 <li><a href="index-22.html">Prev Letter</a></li>
 252 <li><a href="index-24.html">Next Letter</a></li>
 253 </ul>
 254 <ul class="navList">
 255 <li><a href="../index.html?index-files/index-23.html" target="_top">Frames</a></li>
 256 <li><a href="index-23.html" target="_top">No&nbsp;Frames</a></li>
 257 </ul>
 258 <ul class="navList" id="allclasses_navbar_bottom">
 259 <li><a href="../allclasses-noframe.html">All&nbsp;Classes</a></li>
 260 </ul>
 261 <div>
 262 <script type="text/javascript"><!--
 263   allClassesLink = document.getElementById("allclasses_navbar_bottom");
 264   if(window==top) {
 265     allClassesLink.style.display = "block";
 266   }
 267   else {
 268     allClassesLink.style.display = "none";
 269   }
 270   //-->
 271 </script>
 272 </div>
 273 <a name="skip.navbar.bottom">
 274 <!--   -->
 275 </a></div>
 276 <!-- ======== END OF BOTTOM NAVBAR ======= -->
 277 </body>
 278 </html>