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  77 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/DirCleaner.html#hasCompleted-compbio.stat.collector.JobDirectory-">hasCompleted(JobDirectory)</a></span> - Method in class compbio.stat.collector.<a href="../compbio/stat/collector/DirCleaner.html" title="class in compbio.stat.collector">DirCleaner</a></dt>
  78 <dd>&nbsp;</dd>
  79 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/ExecutionStatCollector.html#hasCompleted-compbio.stat.collector.JobDirectory-">hasCompleted(JobDirectory)</a></span> - Method in class compbio.stat.collector.<a href="../compbio/stat/collector/ExecutionStatCollector.html" title="class in compbio.stat.collector">ExecutionStatCollector</a></dt>
  80 <dd>&nbsp;</dd>
  81 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/StatisticManager.html#hasDump--">hasDump()</a></span> - Method in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/StatisticManager.html" title="class in compbio.engine.cluster.drmaa">StatisticManager</a></dt>
  82 <dd>&nbsp;</dd>
  83 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/StatisticManager.html#hasExited--">hasExited()</a></span> - Method in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/StatisticManager.html" title="class in compbio.engine.cluster.drmaa">StatisticManager</a></dt>
  84 <dd>&nbsp;</dd>
  85 <dt><span class="memberNameLink"><a href="../compbio/data/msa/Category.html#hashCode--">hashCode()</a></span> - Method in class compbio.data.msa.<a href="../compbio/data/msa/Category.html" title="class in compbio.data.msa">Category</a></dt>
  86 <dd>&nbsp;</dd>
  87 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/Alignment.html#hashCode--">hashCode()</a></span> - Method in class compbio.data.sequence.<a href="../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</a></dt>
  88 <dd>&nbsp;</dd>
  89 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/AlignmentMetadata.html#hashCode--">hashCode()</a></span> - Method in class compbio.data.sequence.<a href="../compbio/data/sequence/AlignmentMetadata.html" title="class in compbio.data.sequence">AlignmentMetadata</a></dt>
  90 <dd>&nbsp;</dd>
  91 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/FastaSequence.html#hashCode--">hashCode()</a></span> - Method in class compbio.data.sequence.<a href="../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</a></dt>
  92 <dd>&nbsp;</dd>
  93 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/Range.html#hashCode--">hashCode()</a></span> - Method in class compbio.data.sequence.<a href="../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</a></dt>
  94 <dd>&nbsp;</dd>
  95 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/Score.html#hashCode--">hashCode()</a></span> - Method in class compbio.data.sequence.<a href="../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</a></dt>
  96 <dd>&nbsp;</dd>
  97 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/ScoreManager.html#hashCode--">hashCode()</a></span> - Method in class compbio.data.sequence.<a href="../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</a></dt>
  98 <dd>&nbsp;</dd>
  99 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/ScoreManager.ScoreHolder.html#hashCode--">hashCode()</a></span> - Method in class compbio.data.sequence.<a href="../compbio/data/sequence/ScoreManager.ScoreHolder.html" title="class in compbio.data.sequence">ScoreManager.ScoreHolder</a></dt>
 100 <dd>&nbsp;</dd>
 101 <dt><span class="memberNameLink"><a href="../compbio/engine/client/CommandBuilder.html#hashCode--">hashCode()</a></span> - Method in class compbio.engine.client.<a href="../compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client">CommandBuilder</a></dt>
 102 <dd>&nbsp;</dd>
 103 <dt><span class="memberNameLink"><a href="../compbio/engine/client/CommandBuilder.Parameter.html#hashCode--">hashCode()</a></span> - Method in class compbio.engine.client.<a href="../compbio/engine/client/CommandBuilder.Parameter.html" title="class in compbio.engine.client">CommandBuilder.Parameter</a></dt>
 104 <dd>&nbsp;</dd>
 105 <dt><span class="memberNameLink"><a href="../compbio/engine/client/RunConfiguration.html#hashCode--">hashCode()</a></span> - Method in class compbio.engine.client.<a href="../compbio/engine/client/RunConfiguration.html" title="class in compbio.engine.client">RunConfiguration</a></dt>
 106 <dd>&nbsp;</dd>
 107 <dt><span class="memberNameLink"><a href="../compbio/engine/client/SkeletalExecutable.html#hashCode--">hashCode()</a></span> - Method in class compbio.engine.client.<a href="../compbio/engine/client/SkeletalExecutable.html" title="class in compbio.engine.client">SkeletalExecutable</a></dt>
 108 <dd>&nbsp;</dd>
 109 <dt><span class="memberNameLink"><a href="../compbio/engine/ClusterJobId.html#hashCode--">hashCode()</a></span> - Method in class compbio.engine.<a href="../compbio/engine/ClusterJobId.html" title="class in compbio.engine">ClusterJobId</a></dt>
 110 <dd>&nbsp;</dd>
 111 <dt><span class="memberNameLink"><a href="../compbio/engine/FilePuller.html#hashCode--">hashCode()</a></span> - Method in class compbio.engine.<a href="../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</a></dt>
 112 <dd>&nbsp;</dd>
 113 <dt><span class="memberNameLink"><a href="../compbio/engine/Job.html#hashCode--">hashCode()</a></span> - Method in class compbio.engine.<a href="../compbio/engine/Job.html" title="class in compbio.engine">Job</a></dt>
 114 <dd>&nbsp;</dd>
 115 <dt><span class="memberNameLink"><a href="../compbio/metadata/ChunkHolder.html#hashCode--">hashCode()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/ChunkHolder.html" title="class in compbio.metadata">ChunkHolder</a></dt>
 116 <dd>&nbsp;</dd>
 117 <dt><span class="memberNameLink"><a href="../compbio/metadata/Limit.html#hashCode--">hashCode()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</a></dt>
 118 <dd>&nbsp;</dd>
 119 <dt><span class="memberNameLink"><a href="../compbio/metadata/Option.html#hashCode--">hashCode()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/Option.html" title="class in compbio.metadata">Option</a></dt>
 120 <dd>&nbsp;</dd>
 121 <dt><span class="memberNameLink"><a href="../compbio/metadata/Parameter.html#hashCode--">hashCode()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</a></dt>
 122 <dd>&nbsp;</dd>
 123 <dt><span class="memberNameLink"><a href="../compbio/metadata/Preset.html#hashCode--">hashCode()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</a></dt>
 124 <dd>&nbsp;</dd>
 125 <dt><span class="memberNameLink"><a href="../compbio/metadata/ValueConstrain.html#hashCode--">hashCode()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/ValueConstrain.html" title="class in compbio.metadata">ValueConstrain</a></dt>
 126 <dd>&nbsp;</dd>
 127 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/JobDirectory.html#hashCode--">hashCode()</a></span> - Method in class compbio.stat.collector.<a href="../compbio/stat/collector/JobDirectory.html" title="class in compbio.stat.collector">JobDirectory</a></dt>
 128 <dd>&nbsp;</dd>
 129 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/JobStat.html#hashCode--">hashCode()</a></span> - Method in class compbio.stat.collector.<a href="../compbio/stat/collector/JobStat.html" title="class in compbio.stat.collector">JobStat</a></dt>
 130 <dd>&nbsp;</dd>
 131 <dt><span class="memberNameLink"><a href="../compbio/stat/servlet/ServiceTestResult.html#hashCode--">hashCode()</a></span> - Method in class compbio.stat.servlet.<a href="../compbio/stat/servlet/ServiceTestResult.html" title="class in compbio.stat.servlet">ServiceTestResult</a></dt>
 132 <dd>&nbsp;</dd>
 133 <dt><span class="memberNameLink"><a href="../compbio/stat/servlet/util/StatCollection.html#hashCode--">hashCode()</a></span> - Method in class compbio.stat.servlet.util.<a href="../compbio/stat/servlet/util/StatCollection.html" title="class in compbio.stat.servlet.util">StatCollection</a></dt>
 134 <dd>&nbsp;</dd>
 135 <dt><span class="memberNameLink"><a href="../compbio/metadata/ValueConstrain.html#hasMaxValue--">hasMaxValue()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/ValueConstrain.html" title="class in compbio.metadata">ValueConstrain</a></dt>
 136 <dd>&nbsp;</dd>
 137 <dt><span class="memberNameLink"><a href="../compbio/metadata/ValueConstrain.html#hasMinValue--">hasMinValue()</a></span> - Method in class compbio.metadata.<a href="../compbio/metadata/ValueConstrain.html" title="class in compbio.metadata">ValueConstrain</a></dt>
 138 <dd>&nbsp;</dd>
 139 <dt><span class="memberNameLink"><a href="../compbio/engine/FilePuller.html#hasMoreData--">hasMoreData()</a></span> - Method in class compbio.engine.<a href="../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</a></dt>
 140 <dd>&nbsp;</dd>
 141 <dt><span class="memberNameLink"><a href="../compbio/data/sequence/FastaReader.html#hasNext--">hasNext()</a></span> - Method in class compbio.data.sequence.<a href="../compbio/data/sequence/FastaReader.html" title="class in compbio.data.sequence">FastaReader</a></dt>
 142 <dt><span class="memberNameLink"><a href="../compbio/engine/client/CommandBuilder.html#hasParam-java.lang.String-">hasParam(String)</a></span> - Method in class compbio.engine.client.<a href="../compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client">CommandBuilder</a></dt>
 143 <dd>&nbsp;</dd>
 144 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/JobStat.html#hasResult--">hasResult()</a></span> - Method in class compbio.stat.collector.<a href="../compbio/stat/collector/JobStat.html" title="class in compbio.stat.collector">JobStat</a></dt>
 145 <dd>&nbsp;</dd>
 146 <dt><span class="memberNameLink"><a href="../compbio/engine/cluster/drmaa/StatisticManager.html#hasSignaled--">hasSignaled()</a></span> - Method in class compbio.engine.cluster.drmaa.<a href="../compbio/engine/cluster/drmaa/StatisticManager.html" title="class in compbio.engine.cluster.drmaa">StatisticManager</a></dt>
 147 <dd>&nbsp;</dd>
 148 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/JobStat.html#hasStarted--">hasStarted()</a></span> - Method in class compbio.stat.collector.<a href="../compbio/stat/collector/JobStat.html" title="class in compbio.stat.collector">JobStat</a></dt>
 149 <dd>&nbsp;</dd>
 150 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/JobDirectory.html#hasStatus-compbio.metadata.JobStatus-">hasStatus(JobStatus)</a></span> - Method in class compbio.stat.collector.<a href="../compbio/stat/collector/JobDirectory.html" title="class in compbio.stat.collector">JobDirectory</a></dt>
 151 <dd>&nbsp;</dd>
 152 <dt><span class="memberNameLink"><a href="../compbio/stat/collector/ExecutionStatCollector.html#hasTimedOut-compbio.stat.collector.JobDirectory-">hasTimedOut(JobDirectory)</a></span> - Method in class compbio.stat.collector.<a href="../compbio/stat/collector/ExecutionStatCollector.html" title="class in compbio.stat.collector">ExecutionStatCollector</a></dt>
 153 <dd>&nbsp;</dd>
 154 <dt><span class="memberNameLink"><a href="../compbio/ws/client/Constraints.html#help_text">help_text</a></span> - Static variable in class compbio.ws.client.<a href="../compbio/ws/client/Constraints.html" title="class in compbio.ws.client">Constraints</a></dt>
 155 <dd>&nbsp;</dd>
 156 <dt><span class="memberNameLink"><a href="../compbio/ws/client/Constraints.html#hostkey">hostkey</a></span> - Static variable in class compbio.ws.client.<a href="../compbio/ws/client/Constraints.html" title="class in compbio.ws.client">Constraints</a></dt>
 157 <dd>&nbsp;</dd>
 158 <dt><span class="memberNameLink"><a href="../compbio/ws/client/AAConClient.html#hostname">hostname</a></span> - Static variable in class compbio.ws.client.<a href="../compbio/ws/client/AAConClient.html" title="class in compbio.ws.client">AAConClient</a></dt>
 159 <dd>
 160 <div class="block">Web service host</div>
 161 </dd>
 162 <dt><span class="memberNameLink"><a href="../compbio/ws/client/WSTester.html#hostname">hostname</a></span> - Variable in class compbio.ws.client.<a href="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</a></dt>
 163 <dd>&nbsp;</dd>
 164 <dt><a href="../compbio/stat/servlet/HttpCodeResponseServiceStatus.html" title="class in compbio.stat.servlet"><span class="typeNameLink">HttpCodeResponseServiceStatus</span></a> - Class in <a href="../compbio/stat/servlet/package-summary.html">compbio.stat.servlet</a></dt>
 165 <dd>
 166 <div class="block">This servlet checks the webservice coming as pathinfo and returns http code
 167  as a reply.</div>
 168 </dd>
 169 <dt><span class="memberNameLink"><a href="../compbio/stat/servlet/HttpCodeResponseServiceStatus.html#HttpCodeResponseServiceStatus--">HttpCodeResponseServiceStatus()</a></span> - Constructor for class compbio.stat.servlet.<a href="../compbio/stat/servlet/HttpCodeResponseServiceStatus.html" title="class in compbio.stat.servlet">HttpCodeResponseServiceStatus</a></dt>
 170 <dd>&nbsp;</dd>
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