website/docs/full_javadoc/overview-tree.html

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   6 <title>Class Hierarchy</title>
   7 <meta name="date" content="2017-04-21">
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  34 <li><a href="overview-summary.html">Overview</a></li>
  35 <li>Package</li>
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  72 <div class="header">
  73 <h1 class="title">Hierarchy For All Packages</h1>
  74 <span class="packageHierarchyLabel">Package Hierarchies:</span>
  75 <ul class="horizontal">
  76 <li><a href="compbio/data/msa/package-tree.html">compbio.data.msa</a>, </li>
  77 <li><a href="compbio/data/msa/jaxws/package-tree.html">compbio.data.msa.jaxws</a>, </li>
  78 <li><a href="compbio/data/sequence/package-tree.html">compbio.data.sequence</a>, </li>
  79 <li><a href="compbio/engine/package-tree.html">compbio.engine</a>, </li>
  80 <li><a href="compbio/engine/client/package-tree.html">compbio.engine.client</a>, </li>
  81 <li><a href="compbio/engine/cluster/drmaa/package-tree.html">compbio.engine.cluster.drmaa</a>, </li>
  82 <li><a href="compbio/engine/conf/package-tree.html">compbio.engine.conf</a>, </li>
  83 <li><a href="compbio/engine/local/package-tree.html">compbio.engine.local</a>, </li>
  84 <li><a href="compbio/metadata/package-tree.html">compbio.metadata</a>, </li>
  85 <li><a href="compbio/runner/package-tree.html">compbio.runner</a>, </li>
  86 <li><a href="compbio/runner/conservation/package-tree.html">compbio.runner.conservation</a>, </li>
  87 <li><a href="compbio/runner/disorder/package-tree.html">compbio.runner.disorder</a>, </li>
  88 <li><a href="compbio/runner/msa/package-tree.html">compbio.runner.msa</a>, </li>
  89 <li><a href="compbio/runner/structure/package-tree.html">compbio.runner.structure</a>, </li>
  90 <li><a href="compbio/stat/collector/package-tree.html">compbio.stat.collector</a>, </li>
  91 <li><a href="compbio/stat/servlet/package-tree.html">compbio.stat.servlet</a>, </li>
  92 <li><a href="compbio/stat/servlet/util/package-tree.html">compbio.stat.servlet.util</a>, </li>
  93 <li><a href="compbio/ws/client/package-tree.html">compbio.ws.client</a>, </li>
  94 <li><a href="compbio/ws/server/package-tree.html">compbio.ws.server</a></li>
  95 </ul>
  96 </div>
  97 <div class="contentContainer">
  98 <h2 title="Class Hierarchy">Class Hierarchy</h2>
  99 <ul>
 100 <li type="circle">java.lang.Object
 101 <ul>
 102 <li type="circle">compbio.ws.client.<a href="compbio/ws/client/AAConClient.html" title="class in compbio.ws.client"><span class="typeNameLink">AAConClient</span></a></li>
 103 <li type="circle">java.util.concurrent.AbstractExecutorService (implements java.util.concurrent.ExecutorService)
 104 <ul>
 105 <li type="circle">java.util.concurrent.ThreadPoolExecutor
 106 <ul>
 107 <li type="circle">compbio.engine.local.<a href="compbio/engine/local/LocalExecutorService.html" title="class in compbio.engine.local"><span class="typeNameLink">LocalExecutorService</span></a></li>
 108 </ul>
 109 </li>
 110 </ul>
 111 </li>
 112 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/Align.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">Align</span></a></li>
 113 <li type="circle">compbio.data.sequence.<a href="compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence"><span class="typeNameLink">Alignment</span></a></li>
 114 <li type="circle">compbio.data.sequence.<a href="compbio/data/sequence/AlignmentMetadata.html" title="class in compbio.data.sequence"><span class="typeNameLink">AlignmentMetadata</span></a></li>
 115 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/AlignResponse.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">AlignResponse</span></a></li>
 116 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/Analize.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">Analize</span></a></li>
 117 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/AnalizeResponse.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">AnalizeResponse</span></a></li>
 118 <li type="circle">compbio.engine.cluster.drmaa.<a href="compbio/engine/cluster/drmaa/AsyncClusterRunner.html" title="class in compbio.engine.cluster.drmaa"><span class="typeNameLink">AsyncClusterRunner</span></a> (implements compbio.engine.<a href="compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</a>)</li>
 119 <li type="circle">compbio.engine.cluster.drmaa.<a href="compbio/engine/cluster/drmaa/AsyncJobRunner.html" title="class in compbio.engine.cluster.drmaa"><span class="typeNameLink">AsyncJobRunner</span></a> (implements compbio.engine.<a href="compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</a>)</li>
 120 <li type="circle">compbio.engine.local.<a href="compbio/engine/local/AsyncLocalRunner.html" title="class in compbio.engine.local"><span class="typeNameLink">AsyncLocalRunner</span></a> (implements compbio.engine.<a href="compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</a>)</li>
 121 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/CancelJob.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">CancelJob</span></a></li>
 122 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/CancelJobResponse.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">CancelJobResponse</span></a></li>
 123 <li type="circle">compbio.data.msa.<a href="compbio/data/msa/Category.html" title="class in compbio.data.msa"><span class="typeNameLink">Category</span></a></li>
 124 <li type="circle">compbio.metadata.<a href="compbio/metadata/ChunkHolder.html" title="class in compbio.metadata"><span class="typeNameLink">ChunkHolder</span></a></li>
 125 <li type="circle">compbio.engine.<a href="compbio/engine/Cleaner.html" title="class in compbio.engine"><span class="typeNameLink">Cleaner</span></a></li>
 126 <li type="circle">compbio.data.sequence.<a href="compbio/data/sequence/ClustalAlignmentUtil.html" title="class in compbio.data.sequence"><span class="typeNameLink">ClustalAlignmentUtil</span></a></li>
 127 <li type="circle">compbio.ws.server.<a href="compbio/ws/server/ClustalOWS.html" title="class in compbio.ws.server"><span class="typeNameLink">ClustalOWS</span></a> (implements compbio.data.msa.<a href="compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa">MsaWS</a>&lt;T&gt;)</li>
 128 <li type="circle">compbio.ws.server.<a href="compbio/ws/server/ClustalWS.html" title="class in compbio.ws.server"><span class="typeNameLink">ClustalWS</span></a> (implements compbio.data.msa.<a href="compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa">MsaWS</a>&lt;T&gt;)</li>
 129 <li type="circle">compbio.engine.cluster.drmaa.<a href="compbio/engine/cluster/drmaa/ClusterEngineUtil.html" title="class in compbio.engine.cluster.drmaa"><span class="typeNameLink">ClusterEngineUtil</span></a></li>
 130 <li type="circle">compbio.engine.<a href="compbio/engine/ClusterJobId.html" title="class in compbio.engine"><span class="typeNameLink">ClusterJobId</span></a></li>
 131 <li type="circle">compbio.engine.cluster.drmaa.<a href="compbio/engine/cluster/drmaa/ClusterRunner.html" title="class in compbio.engine.cluster.drmaa"><span class="typeNameLink">ClusterRunner</span></a> (implements compbio.engine.<a href="compbio/engine/SyncExecutor.html" title="interface in compbio.engine">SyncExecutor</a>)</li>
 132 <li type="circle">compbio.engine.cluster.drmaa.<a href="compbio/engine/cluster/drmaa/ClusterSession.html" title="class in compbio.engine.cluster.drmaa"><span class="typeNameLink">ClusterSession</span></a></li>
 133 <li type="circle">compbio.engine.cluster.drmaa.<a href="compbio/engine/cluster/drmaa/ClusterUtil.html" title="class in compbio.engine.cluster.drmaa"><span class="typeNameLink">ClusterUtil</span></a></li>
 134 <li type="circle">compbio.ws.client.<a href="compbio/ws/client/CmdHelper.html" title="class in compbio.ws.client"><span class="typeNameLink">CmdHelper</span></a></li>
 135 <li type="circle">compbio.engine.client.<a href="compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client"><span class="typeNameLink">CommandBuilder</span></a>&lt;T&gt;</li>
 136 <li type="circle">compbio.engine.client.<a href="compbio/engine/client/CommandBuilder.Parameter.html" title="class in compbio.engine.client"><span class="typeNameLink">CommandBuilder.Parameter</span></a></li>
 137 <li type="circle">compbio.engine.client.<a href="compbio/engine/client/ConfExecutable.html" title="class in compbio.engine.client"><span class="typeNameLink">ConfExecutable</span></a>&lt;T&gt; (implements compbio.engine.client.<a href="compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</a>&lt;T&gt;)</li>
 138 <li type="circle">compbio.engine.<a href="compbio/engine/Configurator.html" title="class in compbio.engine"><span class="typeNameLink">Configurator</span></a></li>
 139 <li type="circle">compbio.ws.client.<a href="compbio/ws/client/Constraints.html" title="class in compbio.ws.client"><span class="typeNameLink">Constraints</span></a></li>
 140 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/CustomAlign.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">CustomAlign</span></a></li>
 141 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/CustomAlignResponse.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">CustomAlignResponse</span></a></li>
 142 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/CustomAnalize.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">CustomAnalize</span></a></li>
 143 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/CustomAnalizeResponse.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">CustomAnalizeResponse</span></a></li>
 144 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/CustomFold.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">CustomFold</span></a></li>
 145 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/CustomFoldResponse.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">CustomFoldResponse</span></a></li>
 146 <li type="circle">compbio.stat.collector.<a href="compbio/stat/collector/DirCleaner.html" title="class in compbio.stat.collector"><span class="typeNameLink">DirCleaner</span></a> (implements java.lang.Runnable)</li>
 147 <li type="circle">compbio.engine.conf.<a href="compbio/engine/conf/DirectoryManager.html" title="class in compbio.engine.conf"><span class="typeNameLink">DirectoryManager</span></a></li>
 148 <li type="circle">compbio.engine.client.<a href="compbio/engine/client/EngineUtil.html" title="class in compbio.engine.client"><span class="typeNameLink">EngineUtil</span></a></li>
 149 <li type="circle">compbio.engine.client.<a href="compbio/engine/client/EnvVariableProcessor.html" title="class in compbio.engine.client"><span class="typeNameLink">EnvVariableProcessor</span></a></li>
 150 <li type="circle">compbio.engine.local.<a href="compbio/engine/local/ExecutableWrapper.html" title="class in compbio.engine.local"><span class="typeNameLink">ExecutableWrapper</span></a> (implements java.util.concurrent.Callable&lt;V&gt;)</li>
 151 <li type="circle">compbio.stat.collector.<a href="compbio/stat/collector/ExecutionStatCollector.html" title="class in compbio.stat.collector"><span class="typeNameLink">ExecutionStatCollector</span></a> (implements java.lang.Runnable)</li>
 152 <li type="circle">compbio.data.sequence.<a href="compbio/data/sequence/FastaReader.html" title="class in compbio.data.sequence"><span class="typeNameLink">FastaReader</span></a> (implements java.util.Iterator&lt;E&gt;)</li>
 153 <li type="circle">compbio.data.sequence.<a href="compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence"><span class="typeNameLink">FastaSequence</span></a></li>
 154 <li type="circle">compbio.engine.<a href="compbio/engine/FilePuller.html" title="class in compbio.engine"><span class="typeNameLink">FilePuller</span></a> (implements java.util.concurrent.Delayed)</li>
 155 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/Fold.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">Fold</span></a></li>
 156 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/FoldResponse.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">FoldResponse</span></a></li>
 157 <li type="circle">compbio.ws.server.<a href="compbio/ws/server/GAUtils.html" title="class in compbio.ws.server"><span class="typeNameLink">GAUtils</span></a></li>
 158 <li type="circle">compbio.ws.server.<a href="compbio/ws/server/GenericMetadataService.html" title="class in compbio.ws.server"><span class="typeNameLink">GenericMetadataService</span></a>&lt;T&gt;
 159 <ul>
 160 <li type="circle">compbio.ws.server.<a href="compbio/ws/server/SequenceAnnotationService.html" title="class in compbio.ws.server"><span class="typeNameLink">SequenceAnnotationService</span></a>&lt;T&gt;
 161 <ul>
 162 <li type="circle">compbio.ws.server.<a href="compbio/ws/server/AAConWS.html" title="class in compbio.ws.server"><span class="typeNameLink">AAConWS</span></a> (implements compbio.data.msa.<a href="compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</a>&lt;T&gt;)</li>
 163 <li type="circle">compbio.ws.server.<a href="compbio/ws/server/DisemblWS.html" title="class in compbio.ws.server"><span class="typeNameLink">DisemblWS</span></a> (implements compbio.data.msa.<a href="compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</a>&lt;T&gt;)</li>
 164 <li type="circle">compbio.ws.server.<a href="compbio/ws/server/GlobPlotWS.html" title="class in compbio.ws.server"><span class="typeNameLink">GlobPlotWS</span></a> (implements compbio.data.msa.<a href="compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</a>&lt;T&gt;)</li>
 165 <li type="circle">compbio.ws.server.<a href="compbio/ws/server/IUPredWS.html" title="class in compbio.ws.server"><span class="typeNameLink">IUPredWS</span></a> (implements compbio.data.msa.<a href="compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</a>&lt;T&gt;)</li>
 166 <li type="circle">compbio.ws.server.<a href="compbio/ws/server/JronnWS.html" title="class in compbio.ws.server"><span class="typeNameLink">JronnWS</span></a> (implements compbio.data.msa.<a href="compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</a>&lt;T&gt;)</li>
 167 <li type="circle">compbio.ws.server.<a href="compbio/ws/server/RNAalifoldWS.html" title="class in compbio.ws.server"><span class="typeNameLink">RNAalifoldWS</span></a> (implements compbio.data.msa.<a href="compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa">SequenceAnnotation</a>&lt;T&gt;)</li>
 168 </ul>
 169 </li>
 170 </ul>
 171 </li>
 172 <li type="circle">javax.servlet.GenericServlet (implements java.io.Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig)
 173 <ul>
 174 <li type="circle">javax.servlet.http.HttpServlet (implements java.io.Serializable)
 175 <ul>
 176 <li type="circle">compbio.stat.servlet.<a href="compbio/stat/servlet/AnnualStat.html" title="class in compbio.stat.servlet"><span class="typeNameLink">AnnualStat</span></a></li>
 177 <li type="circle">compbio.stat.servlet.<a href="compbio/stat/servlet/DisplayStat.html" title="class in compbio.stat.servlet"><span class="typeNameLink">DisplayStat</span></a></li>
 178 <li type="circle">compbio.stat.servlet.<a href="compbio/stat/servlet/DownloadRedirector.html" title="class in compbio.stat.servlet"><span class="typeNameLink">DownloadRedirector</span></a></li>
 179 <li type="circle">compbio.stat.servlet.<a href="compbio/stat/servlet/HttpCodeResponseServiceStatus.html" title="class in compbio.stat.servlet"><span class="typeNameLink">HttpCodeResponseServiceStatus</span></a></li>
 180 <li type="circle">compbio.stat.servlet.<a href="compbio/stat/servlet/Joblist.html" title="class in compbio.stat.servlet"><span class="typeNameLink">Joblist</span></a></li>
 181 <li type="circle">compbio.stat.servlet.<a href="compbio/stat/servlet/ServiceStatus.html" title="class in compbio.stat.servlet"><span class="typeNameLink">ServiceStatus</span></a></li>
 182 </ul>
 183 </li>
 184 </ul>
 185 </li>
 186 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/GetAnnotation.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">GetAnnotation</span></a></li>
 187 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/GetAnnotationResponse.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">GetAnnotationResponse</span></a></li>
 188 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/GetJobStatus.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">GetJobStatus</span></a></li>
 189 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/GetJobStatusResponse.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">GetJobStatusResponse</span></a></li>
 190 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/GetLastTested.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">GetLastTested</span></a></li>
 191 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/GetLastTestedOn.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">GetLastTestedOn</span></a></li>
 192 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/GetLastTestedOnResponse.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">GetLastTestedOnResponse</span></a></li>
 193 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/GetLastTestedResponse.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">GetLastTestedResponse</span></a></li>
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 306 <li type="circle">compbio.ws.server.<a href="compbio/ws/server/TcoffeeWS.html" title="class in compbio.ws.server"><span class="typeNameLink">TcoffeeWS</span></a> (implements compbio.data.msa.<a href="compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa">MsaWS</a>&lt;T&gt;)</li>
 307 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/TestAllServices.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">TestAllServices</span></a></li>
 308 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/TestAllServicesResponse.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">TestAllServicesResponse</span></a></li>
 309 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/TestService.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">TestService</span></a></li>
 310 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/TestServiceResponse.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">TestServiceResponse</span></a></li>
 311 <li type="circle">java.lang.Throwable (implements java.io.Serializable)
 312 <ul>
 313 <li type="circle">java.lang.Exception
 314 <ul>
 315 <li type="circle">compbio.metadata.<a href="compbio/metadata/JobExecutionException.html" title="class in compbio.metadata"><span class="typeNameLink">JobExecutionException</span></a></li>
 316 <li type="circle">compbio.metadata.<a href="compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata"><span class="typeNameLink">JobSubmissionException</span></a>
 317 <ul>
 318 <li type="circle">compbio.metadata.<a href="compbio/metadata/LimitExceededException.html" title="class in compbio.metadata"><span class="typeNameLink">LimitExceededException</span></a></li>
 319 <li type="circle">compbio.metadata.<a href="compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata"><span class="typeNameLink">UnsupportedRuntimeException</span></a></li>
 320 </ul>
 321 </li>
 322 <li type="circle">compbio.metadata.<a href="compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata"><span class="typeNameLink">ResultNotAvailableException</span></a></li>
 323 <li type="circle">compbio.data.sequence.<a href="compbio/data/sequence/UnknownFileFormatException.html" title="class in compbio.data.sequence"><span class="typeNameLink">UnknownFileFormatException</span></a></li>
 324 <li type="circle">compbio.metadata.<a href="compbio/metadata/WrongParameterException.html" title="class in compbio.metadata"><span class="typeNameLink">WrongParameterException</span></a></li>
 325 </ul>
 326 </li>
 327 </ul>
 328 </li>
 329 <li type="circle">compbio.stat.servlet.util.<a href="compbio/stat/servlet/util/Totals.html" title="class in compbio.stat.servlet.util"><span class="typeNameLink">Totals</span></a></li>
 330 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">UnsupportedRuntimeExceptionBean</span></a></li>
 331 <li type="circle">compbio.runner.<a href="compbio/runner/Util.html" title="class in compbio.runner"><span class="typeNameLink">Util</span></a></li>
 332 <li type="circle">compbio.engine.client.<a href="compbio/engine/client/Util.html" title="class in compbio.engine.client"><span class="typeNameLink">Util</span></a></li>
 333 <li type="circle">compbio.metadata.<a href="compbio/metadata/ValueConstrain.html" title="class in compbio.metadata"><span class="typeNameLink">ValueConstrain</span></a></li>
 334 <li type="circle">compbio.data.msa.jaxws.<a href="compbio/data/msa/jaxws/WrongParameterExceptionBean.html" title="class in compbio.data.msa.jaxws"><span class="typeNameLink">WrongParameterExceptionBean</span></a></li>
 335 <li type="circle">compbio.ws.client.<a href="compbio/ws/client/WSTester.html" title="class in compbio.ws.client"><span class="typeNameLink">WSTester</span></a></li>
 336 <li type="circle">compbio.ws.server.<a href="compbio/ws/server/WSUtil.html" title="class in compbio.ws.server"><span class="typeNameLink">WSUtil</span></a></li>
 337 </ul>
 338 </li>
 339 </ul>
 340 <h2 title="Interface Hierarchy">Interface Hierarchy</h2>
 341 <ul>
 342 <li type="circle">compbio.metadata.<a href="compbio/metadata/Argument.html" title="interface in compbio.metadata"><span class="typeNameLink">Argument</span></a>&lt;T&gt;</li>
 343 <li type="circle">compbio.engine.<a href="compbio/engine/AsyncExecutor.html" title="interface in compbio.engine"><span class="typeNameLink">AsyncExecutor</span></a></li>
 344 <li type="circle">compbio.engine.client.<a href="compbio/engine/client/Executable.html" title="interface in compbio.engine.client"><span class="typeNameLink">Executable</span></a>&lt;T&gt;
 345 <ul>
 346 <li type="circle">compbio.engine.client.<a href="compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client"><span class="typeNameLink">ConfiguredExecutable</span></a>&lt;T&gt; (also extends compbio.engine.client.<a href="compbio/engine/client/PipedExecutable.html" title="interface in compbio.engine.client">PipedExecutable</a>&lt;T&gt;)</li>
 347 <li type="circle">compbio.engine.client.<a href="compbio/engine/client/PipedExecutable.html" title="interface in compbio.engine.client"><span class="typeNameLink">PipedExecutable</span></a>&lt;T&gt;
 348 <ul>
 349 <li type="circle">compbio.engine.client.<a href="compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client"><span class="typeNameLink">ConfiguredExecutable</span></a>&lt;T&gt; (also extends compbio.engine.client.<a href="compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</a>&lt;T&gt;)</li>
 350 </ul>
 351 </li>
 352 </ul>
 353 </li>
 354 <li type="circle">compbio.data.msa.<a href="compbio/data/msa/JABAService.html" title="interface in compbio.data.msa"><span class="typeNameLink">JABAService</span></a>
 355 <ul>
 356 <li type="circle">compbio.data.msa.<a href="compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa"><span class="typeNameLink">MsaWS</span></a>&lt;T&gt; (also extends compbio.data.msa.<a href="compbio/data/msa/JManagement.html" title="interface in compbio.data.msa">JManagement</a>, compbio.data.msa.<a href="compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a>&lt;T&gt;)</li>
 357 <li type="circle">compbio.data.msa.<a href="compbio/data/msa/RegistryWS.html" title="interface in compbio.data.msa"><span class="typeNameLink">RegistryWS</span></a></li>
 358 <li type="circle">compbio.data.msa.<a href="compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa"><span class="typeNameLink">SequenceAnnotation</span></a>&lt;T&gt; (also extends compbio.data.msa.<a href="compbio/data/msa/JManagement.html" title="interface in compbio.data.msa">JManagement</a>, compbio.data.msa.<a href="compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a>&lt;T&gt;)</li>
 359 </ul>
 360 </li>
 361 <li type="circle">compbio.data.msa.<a href="compbio/data/msa/JManagement.html" title="interface in compbio.data.msa"><span class="typeNameLink">JManagement</span></a>
 362 <ul>
 363 <li type="circle">compbio.data.msa.<a href="compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa"><span class="typeNameLink">MsaWS</span></a>&lt;T&gt; (also extends compbio.data.msa.<a href="compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</a>, compbio.data.msa.<a href="compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a>&lt;T&gt;)</li>
 364 <li type="circle">compbio.data.msa.<a href="compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa"><span class="typeNameLink">SequenceAnnotation</span></a>&lt;T&gt; (also extends compbio.data.msa.<a href="compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</a>, compbio.data.msa.<a href="compbio/data/msa/Metadata.html" title="interface in compbio.data.msa">Metadata</a>&lt;T&gt;)</li>
 365 </ul>
 366 </li>
 367 <li type="circle">compbio.data.msa.<a href="compbio/data/msa/Metadata.html" title="interface in compbio.data.msa"><span class="typeNameLink">Metadata</span></a>&lt;T&gt;
 368 <ul>
 369 <li type="circle">compbio.data.msa.<a href="compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa"><span class="typeNameLink">MsaWS</span></a>&lt;T&gt; (also extends compbio.data.msa.<a href="compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</a>, compbio.data.msa.<a href="compbio/data/msa/JManagement.html" title="interface in compbio.data.msa">JManagement</a>)</li>
 370 <li type="circle">compbio.data.msa.<a href="compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa"><span class="typeNameLink">SequenceAnnotation</span></a>&lt;T&gt; (also extends compbio.data.msa.<a href="compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</a>, compbio.data.msa.<a href="compbio/data/msa/JManagement.html" title="interface in compbio.data.msa">JManagement</a>)</li>
 371 </ul>
 372 </li>
 373 <li type="circle">compbio.engine.<a href="compbio/engine/SyncExecutor.html" title="interface in compbio.engine"><span class="typeNameLink">SyncExecutor</span></a></li>
 374 </ul>
 375 <h2 title="Enum Hierarchy">Enum Hierarchy</h2>
 376 <ul>
 377 <li type="circle">java.lang.Object
 378 <ul>
 379 <li type="circle">java.lang.Enum&lt;E&gt; (implements java.lang.Comparable&lt;T&gt;, java.io.Serializable)
 380 <ul>
 381 <li type="circle">compbio.data.sequence.<a href="compbio/data/sequence/Program.html" title="enum in compbio.data.sequence"><span class="typeNameLink">Program</span></a></li>
 382 <li type="circle">compbio.metadata.<a href="compbio/metadata/ValueConstrain.Type.html" title="enum in compbio.metadata"><span class="typeNameLink">ValueConstrain.Type</span></a></li>
 383 <li type="circle">compbio.data.sequence.<a href="compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence"><span class="typeNameLink">SMERFSConstraints</span></a></li>
 384 <li type="circle">compbio.data.sequence.<a href="compbio/data/sequence/RNAStructReader.AlifoldLine.html" title="enum in compbio.data.sequence"><span class="typeNameLink">RNAStructReader.AlifoldLine</span></a></li>
 385 <li type="circle">compbio.data.sequence.<a href="compbio/data/sequence/RNAStructReader.RNAOut.html" title="enum in compbio.data.sequence"><span class="typeNameLink">RNAStructReader.RNAOut</span></a></li>
 386 <li type="circle">compbio.data.sequence.<a href="compbio/data/sequence/RNAStructReader.AlifoldResult.html" title="enum in compbio.data.sequence"><span class="typeNameLink">RNAStructReader.AlifoldResult</span></a></li>
 387 <li type="circle">compbio.ws.client.<a href="compbio/ws/client/Services.html" title="enum in compbio.ws.client"><span class="typeNameLink">Services</span></a></li>
 388 <li type="circle">compbio.data.sequence.<a href="compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence"><span class="typeNameLink">ConservationMethod</span></a></li>
 389 <li type="circle">compbio.metadata.<a href="compbio/metadata/JobStatus.html" title="enum in compbio.metadata"><span class="typeNameLink">JobStatus</span></a></li>
 390 <li type="circle">compbio.engine.local.<a href="compbio/engine/local/StreamGobbler.OutputType.html" title="enum in compbio.engine.local"><span class="typeNameLink">StreamGobbler.OutputType</span></a></li>
 391 <li type="circle">compbio.data.sequence.<a href="compbio/data/sequence/DisemblResult.html" title="enum in compbio.data.sequence"><span class="typeNameLink">DisemblResult</span></a></li>
 392 <li type="circle">compbio.data.sequence.<a href="compbio/data/sequence/GlobProtResult.html" title="enum in compbio.data.sequence"><span class="typeNameLink">GlobProtResult</span></a></li>
 393 <li type="circle">compbio.data.sequence.<a href="compbio/data/sequence/IUPredResult.html" title="enum in compbio.data.sequence"><span class="typeNameLink">IUPredResult</span></a></li>
 394 <li type="circle">compbio.data.sequence.<a href="compbio/data/sequence/DisorderMethod.html" title="enum in compbio.data.sequence"><span class="typeNameLink">DisorderMethod</span></a></li>
 395 <li type="circle">compbio.stat.servlet.util.<a href="compbio/stat/servlet/util/StatCollection.Stattype.html" title="enum in compbio.stat.servlet.util"><span class="typeNameLink">StatCollection.Stattype</span></a></li>
 396 <li type="circle">compbio.engine.client.<a href="compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client"><span class="typeNameLink">Executable.ExecProvider</span></a></li>
 397 </ul>
 398 </li>
 399 </ul>
 400 </li>
 401 </ul>
 402 </div>
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 410 </a>
 411 <ul class="navList" title="Navigation">
 412 <li><a href="overview-summary.html">Overview</a></li>
 413 <li>Package</li>
 414 <li>Class</li>
 415 <li>Use</li>
 416 <li class="navBarCell1Rev">Tree</li>
 417 <li><a href="deprecated-list.html">Deprecated</a></li>
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