website/full_javadoc/compbio/data/_structure/JpredResult.html

   1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">\r
   2 <!--NewPage-->\r
   3 <HTML>\r
   4 <HEAD>\r
   5 <!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:50 GMT 2010 -->\r
   6 <TITLE>\r
   7 JpredResult\r
   8 </TITLE>\r
   9 \r
  10 <META NAME="date" CONTENT="2010-02-17">\r
  11 \r
  12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">\r
  13 \r
  14 <SCRIPT type="text/javascript">\r
  15 function windowTitle()\r
  16 {\r
  17     if (location.href.indexOf('is-external=true') == -1) {\r
  18         parent.document.title="JpredResult";\r
  19     }\r
  20 }\r
  21 </SCRIPT>\r
  22 <NOSCRIPT>\r
  23 </NOSCRIPT>\r
  24 \r
  25 </HEAD>\r
  26 \r
  27 <BODY BGCOLOR="white" onload="windowTitle();">\r
  28 <HR>\r
  29 \r
  30 \r
  31 <!-- ========= START OF TOP NAVBAR ======= -->\r
  32 <A NAME="navbar_top"><!-- --></A>\r
  33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>\r
  34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
  35 <TR>\r
  36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
  37 <A NAME="navbar_top_firstrow"><!-- --></A>\r
  38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
  39   <TR ALIGN="center" VALIGN="top">\r
  40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
  41   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
  42   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>\r
  43   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/JpredResult.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
  44   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
  45   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
  46   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
  47   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
  48   </TR>\r
  49 </TABLE>\r
  50 </TD>\r
  51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
  52 </EM>\r
  53 </TD>\r
  54 </TR>\r
  55 \r
  56 <TR>\r
  57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
  58 &nbsp;<A HREF="../../../compbio/data/_structure/JpredAnnotation.html" title="enum in compbio.data._structure"><B>PREV CLASS</B></A>&nbsp;\r
  59 &nbsp;NEXT CLASS</FONT></TD>\r
  60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
  61   <A HREF="../../../index.html?compbio/data/_structure/JpredResult.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
  62 &nbsp;<A HREF="JpredResult.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
  63 &nbsp;<SCRIPT type="text/javascript">\r
  64   <!--\r
  65   if(window==top) {\r
  66     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
  67   }\r
  68   //-->\r
  69 </SCRIPT>\r
  70 <NOSCRIPT>\r
  71   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
  72 </NOSCRIPT>\r
  73 \r
  74 \r
  75 </FONT></TD>\r
  76 </TR>\r
  77 <TR>\r
  78 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
  79   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#methods_inherited_from_class_java.lang.Object">METHOD</A></FONT></TD>\r
  80 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
  81 DETAIL:&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_detail">CONSTR</A>&nbsp;|&nbsp;METHOD</FONT></TD>\r
  82 </TR>\r
  83 </TABLE>\r
  84 <A NAME="skip-navbar_top"></A>\r
  85 <!-- ========= END OF TOP NAVBAR ========= -->\r
  86 \r
  87 <HR>\r
  88 <!-- ======== START OF CLASS DATA ======== -->\r
  89 <H2>\r
  90 <FONT SIZE="-1">\r
  91 compbio.data._structure</FONT>\r
  92 <BR>\r
  93 Class JpredResult</H2>\r
  94 <PRE>\r
  95 java.lang.Object\r
  96   <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.data._structure.JpredResult</B>\r
  97 </PRE>\r
  98 <HR>\r
  99 <DL>\r
 100 <DT><PRE>public class <B>JpredResult</B><DT>extends java.lang.Object</DL>\r
 101 </PRE>\r
 102 \r
 103 <P>\r
 104 Jnet result
 105
 106  jnetpred:-,H,H,H,H,H,H,H,H,H,H,H,-,-,-,-,-,-,-,-,E,E,E,-,-,-,-,-,-,-,-,-,-,-,
 107  -,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,H,H,H,H,H,H,H,H,H,H
 108  ,H,H,-,-,H,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,H,H,H,H,H,-,-,-,-,H,H,H,H,
 109  -,-,-,-,-,-,-,-,-,-,-,-,H,H,H,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-
 110  , JNETCONF:7,3,7,9,9,9,9,9,9,9,7,5,2,6,6,3,6,7,5,1,0,5,3,3,6,4,6,6,7,7,7,7,7,
 111  7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,6,3,6,8,9,9,9,9,9,9,9
 112  7,3,7,7,6,2,4,4,1,5,7,8,7,7,7,7,7,7,7,6,5,3,5,6,6,6,4,0,0,2,1,3,5,7,7,7,7,7,7
 113  , JNETSOL25:B,B,-,-,-,B,-,B,-,B,B,B,-,-,-,B,-,B,-,-,-,-,-,B,-,B,-,-,-,-,-,-,
 114  -,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,B,-,-,-,B,-,B,-
 115  , B,B,B,-,-,-,B,-,-,-,-,-,-,-,-,-,-,-,-,-,-,-,B,-,-,B,B,-,-,-,-,B,-,-,B,B,-,-
 116  ,B,
 117  JNETSOL5:-,-,-,-,-,-,B,-,-,-,-,-,-,-,-,-,B,B,B,B,-,-,-,B,-,-,-,-,-,-,-,-,-
 118  ,-,-
 119  JNETSOL0:-,-,-,-,-,-,B,-,-,B,-,B,-,-,-,-,-,-,-,-,B,-,-,-,-,-,-,-,-,-,-,-,
 120  -,-,- ,-,-,-,-,-,-,-,-,-,-,-,-,B,-,-,B,-,B,-,-,
 121  JNETHMM:-,H,H,H,H,H,H,H,H,H,H,
 122  H,-,-,-,-,-,-,-,-,E,E,E,-,-,-,-,-,-,-,-,-,-,-,-,
 123  -,-,-,-,-,-,-,-,-,-,-,-,-,-,-
 124  ,-,-,-,-,-,-,-,-,-,-,-,-,-,H,H,H,H,H,H,H,H,H,H,H,
 125  JNETPROPH:0.0110,0.1125,0.8552,0.0107
 126  ,0.6245,0.3614,0.0120,0.8702,0.1238,0.0120
 127  ,0.0193,0.9284,0.0708,0.0278,0.8703,0.1244
 128  ,0.1591,0.7399,0.1456,0.2488,0.5824,0.1017,
 129  JNETPROPE:0.0107,0.6245,0.3614,0.0120
 130  ,0.8702,0.1238,0.0120,0.9335,0.0656,0.0102
 131  ,0.9586,0.0465,0.0094,0.9662,0.0433,
 132  ,0.1525,0.7103,0.1088,0.1181,0.7425,0.1784,\r
 133 <P>\r
 134 \r
 135 <P>\r
 136 <DL>\r
 137 <DT><B>Author:</B></DT>\r
 138   <DD>pvtroshin</DD>\r
 139 </DL>\r
 140 <HR>\r
 141 \r
 142 <P>\r
 143 \r
 144 <!-- ======== CONSTRUCTOR SUMMARY ======== -->\r
 145 \r
 146 <A NAME="constructor_summary"><!-- --></A>\r
 147 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 148 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 149 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 150 <B>Constructor Summary</B></FONT></TH>\r
 151 </TR>\r
 152 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 153 <TD><CODE><B><A HREF="../../../compbio/data/_structure/JpredResult.html#JpredResult()">JpredResult</A></B>()</CODE>\r
 154 \r
 155 <BR>\r
 156 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 157 </TR>\r
 158 </TABLE>\r
 159 &nbsp;\r
 160 <!-- ========== METHOD SUMMARY =========== -->\r
 161 \r
 162 <A NAME="method_summary"><!-- --></A>\r
 163 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 164 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 165 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 166 <B>Method Summary</B></FONT></TH>\r
 167 </TR>\r
 168 </TABLE>\r
 169 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
 170 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 171 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
 172 <TH ALIGN="left"><B>Methods inherited from class java.lang.Object</B></TH>\r
 173 </TR>\r
 174 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 175 <TD><CODE>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</CODE></TD>\r
 176 </TR>\r
 177 </TABLE>\r
 178 &nbsp;\r
 179 <P>\r
 180 \r
 181 <!-- ========= CONSTRUCTOR DETAIL ======== -->\r
 182 \r
 183 <A NAME="constructor_detail"><!-- --></A>\r
 184 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 185 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 186 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
 187 <B>Constructor Detail</B></FONT></TH>\r
 188 </TR>\r
 189 </TABLE>\r
 190 \r
 191 <A NAME="JpredResult()"><!-- --></A><H3>\r
 192 JpredResult</H3>\r
 193 <PRE>\r
 194 public <B>JpredResult</B>()</PRE>\r
 195 <DL>\r
 196 </DL>\r
 197 <!-- ========= END OF CLASS DATA ========= -->\r
 198 <HR>\r
 199 \r
 200 \r
 201 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
 202 <A NAME="navbar_bottom"><!-- --></A>\r
 203 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
 204 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
 205 <TR>\r
 206 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
 207 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
 208 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
 209   <TR ALIGN="center" VALIGN="top">\r
 210   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
 211   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
 212   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>\r
 213   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/JpredResult.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
 214   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
 215   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
 216   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
 217   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
 218   </TR>\r
 219 </TABLE>\r
 220 </TD>\r
 221 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
 222 </EM>\r
 223 </TD>\r
 224 </TR>\r
 225 \r
 226 <TR>\r
 227 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
 228 &nbsp;<A HREF="../../../compbio/data/_structure/JpredAnnotation.html" title="enum in compbio.data._structure"><B>PREV CLASS</B></A>&nbsp;\r
 229 &nbsp;NEXT CLASS</FONT></TD>\r
 230 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
 231   <A HREF="../../../index.html?compbio/data/_structure/JpredResult.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
 232 &nbsp;<A HREF="JpredResult.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
 233 &nbsp;<SCRIPT type="text/javascript">\r
 234   <!--\r
 235   if(window==top) {\r
 236     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
 237   }\r
 238   //-->\r
 239 </SCRIPT>\r
 240 <NOSCRIPT>\r
 241   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
 242 </NOSCRIPT>\r
 243 \r
 244 \r
 245 </FONT></TD>\r
 246 </TR>\r
 247 <TR>\r
 248 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
 249   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#methods_inherited_from_class_java.lang.Object">METHOD</A></FONT></TD>\r
 250 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
 251 DETAIL:&nbsp;FIELD&nbsp;|&nbsp;<A HREF="#constructor_detail">CONSTR</A>&nbsp;|&nbsp;METHOD</FONT></TD>\r
 252 </TR>\r
 253 </TABLE>\r
 254 <A NAME="skip-navbar_bottom"></A>\r
 255 <!-- ======== END OF BOTTOM NAVBAR ======= -->\r
 256 \r
 257 <HR>\r
 258 \r
 259 </BODY>\r
 260 </HTML>\r