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91 compbio.data.msa</FONT>
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95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>
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96 <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.data.msa.Category</B>
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100 <DT><PRE>public class <B>Category</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>
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104 Class that splits <A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client"><CODE>Services</CODE></A> to categories. Services themselves have no
105 knowledge which category they belongs to.
107 This class is responsible for initialization of all the categories (done
108 statically) and holds the category names as constrains.
110 Two categories considered equals if their names are equals.
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115 <DT><B>Version:</B></DT>
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116 <DD>1.0 September 2011</DD>
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117 <DT><B>Author:</B></DT>
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123 <!-- =========== FIELD SUMMARY =========== -->
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129 <B>Field Summary</B></FONT></TH>
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133 <CODE>static <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>
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134 <TD><CODE><B><A HREF="../../../compbio/data/msa/Category.html#CATEGORY_ALIGNMENT">CATEGORY_ALIGNMENT</A></B></CODE>
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137 All of the Category names</TD>
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139 <TR BGCOLOR="white" CLASS="TableRowColor">
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140 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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141 <CODE>static <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>
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142 <TD><CODE><B><A HREF="../../../compbio/data/msa/Category.html#CATEGORY_CONSERVATION">CATEGORY_CONSERVATION</A></B></CODE>
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145 </TD>
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147 <TR BGCOLOR="white" CLASS="TableRowColor">
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148 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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149 <CODE>static <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>
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150 <TD><CODE><B><A HREF="../../../compbio/data/msa/Category.html#CATEGORY_DISORDER">CATEGORY_DISORDER</A></B></CODE>
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153 </TD>
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155 <TR BGCOLOR="white" CLASS="TableRowColor">
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156 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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157 <CODE> <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>
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158 <TD><CODE><B><A HREF="../../../compbio/data/msa/Category.html#name">name</A></B></CODE>
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161 </TD>
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165 <!-- ========== METHOD SUMMARY =========== -->
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171 <B>Method Summary</B></FONT></TH>
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174 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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175 <CODE> boolean</CODE></FONT></TD>
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176 <TD><CODE><B><A HREF="../../../compbio/data/msa/Category.html#equals(java.lang.Object)">equals</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A> obj)</CODE>
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179 </TD>
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181 <TR BGCOLOR="white" CLASS="TableRowColor">
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182 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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183 <CODE>static <A HREF="http://java.sun.com/javase/6/docs/api/java/util/Set.html?is-external=true" title="class or interface in java.util">Set</A><<A HREF="../../../compbio/data/msa/Category.html" title="class in compbio.data.msa">Category</A>></CODE></FONT></TD>
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184 <TD><CODE><B><A HREF="../../../compbio/data/msa/Category.html#getCategories()">getCategories</A></B>()</CODE>
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187 </TD>
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189 <TR BGCOLOR="white" CLASS="TableRowColor">
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190 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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191 <CODE> <A HREF="http://java.sun.com/javase/6/docs/api/java/util/Set.html?is-external=true" title="class or interface in java.util">Set</A><<A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>></CODE></FONT></TD>
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192 <TD><CODE><B><A HREF="../../../compbio/data/msa/Category.html#getServices()">getServices</A></B>()</CODE>
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195 </TD>
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197 <TR BGCOLOR="white" CLASS="TableRowColor">
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198 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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199 <CODE> int</CODE></FONT></TD>
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200 <TD><CODE><B><A HREF="../../../compbio/data/msa/Category.html#hashCode()">hashCode</A></B>()</CODE>
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203 </TD>
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206 <A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>
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209 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>
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211 <TR BGCOLOR="white" CLASS="TableRowColor">
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212 <TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>
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218 <!-- ============ FIELD DETAIL =========== -->
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223 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
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224 <B>Field Detail</B></FONT></TH>
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228 <A NAME="CATEGORY_ALIGNMENT"><!-- --></A><H3>
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229 CATEGORY_ALIGNMENT</H3>
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231 public static final <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>CATEGORY_ALIGNMENT</B></PRE>
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233 <DD>All of the Category names
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236 <DT><B>See Also:</B><DD><A HREF="../../../constant-values.html#compbio.data.msa.Category.CATEGORY_ALIGNMENT">Constant Field Values</A></DL>
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240 <A NAME="CATEGORY_DISORDER"><!-- --></A><H3>
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241 CATEGORY_DISORDER</H3>
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243 public static final <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>CATEGORY_DISORDER</B></PRE>
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246 <DT><B>See Also:</B><DD><A HREF="../../../constant-values.html#compbio.data.msa.Category.CATEGORY_DISORDER">Constant Field Values</A></DL>
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250 <A NAME="CATEGORY_CONSERVATION"><!-- --></A><H3>
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251 CATEGORY_CONSERVATION</H3>
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253 public static final <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>CATEGORY_CONSERVATION</B></PRE>
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256 <DT><B>See Also:</B><DD><A HREF="../../../constant-values.html#compbio.data.msa.Category.CATEGORY_CONSERVATION">Constant Field Values</A></DL>
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260 <A NAME="name"><!-- --></A><H3>
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263 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>name</B></PRE>
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269 <!-- ============ METHOD DETAIL ========== -->
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274 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
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275 <B>Method Detail</B></FONT></TH>
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279 <A NAME="getServices()"><!-- --></A><H3>
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282 public <A HREF="http://java.sun.com/javase/6/docs/api/java/util/Set.html?is-external=true" title="class or interface in java.util">Set</A><<A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>> <B>getServices</B>()</PRE>
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290 <A NAME="getCategories()"><!-- --></A><H3>
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293 public static <A HREF="http://java.sun.com/javase/6/docs/api/java/util/Set.html?is-external=true" title="class or interface in java.util">Set</A><<A HREF="../../../compbio/data/msa/Category.html" title="class in compbio.data.msa">Category</A>> <B>getCategories</B>()</PRE>
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301 <A NAME="hashCode()"><!-- --></A><H3>
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304 public int <B>hashCode</B>()</PRE>
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307 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>
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315 <A NAME="equals(java.lang.Object)"><!-- --></A><H3>
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318 public boolean <B>equals</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A> obj)</PRE>
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321 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>
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