1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
\r
5 <!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:30:43 GMT 2011 -->
\r
7 Uses of Package compbio.data.msa
\r
10 <META NAME="date" CONTENT="2011-12-07">
\r
12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">
\r
14 <SCRIPT type="text/javascript">
\r
15 function windowTitle()
\r
17 if (location.href.indexOf('is-external=true') == -1) {
\r
18 parent.document.title="Uses of Package compbio.data.msa";
\r
27 <BODY BGCOLOR="white" onload="windowTitle();">
\r
31 <!-- ========= START OF TOP NAVBAR ======= -->
\r
32 <A NAME="navbar_top"><!-- --></A>
\r
33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>
\r
34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">
\r
36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">
\r
37 <A NAME="navbar_top_firstrow"><!-- --></A>
\r
38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">
\r
39 <TR ALIGN="center" VALIGN="top">
\r
40 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A> </TD>
\r
41 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A> </TD>
\r
42 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Class</FONT> </TD>
\r
43 <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> <FONT CLASS="NavBarFont1Rev"><B>Use</B></FONT> </TD>
\r
44 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A> </TD>
\r
45 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A> </TD>
\r
46 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A> </TD>
\r
47 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A> </TD>
\r
51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
\r
57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
\r
59 NEXT</FONT></TD>
\r
60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
\r
61 <A HREF="../../../index.html?compbio/data/msa/package-use.html" target="_top"><B>FRAMES</B></A>
\r
62 <A HREF="package-use.html" target="_top"><B>NO FRAMES</B></A>
\r
63 <SCRIPT type="text/javascript">
\r
66 document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');
\r
71 <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>
\r
78 <A NAME="skip-navbar_top"></A>
\r
79 <!-- ========= END OF TOP NAVBAR ========= -->
\r
84 <B>Uses of Package<br>compbio.data.msa</B></H2>
\r
87 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
88 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
89 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
90 Packages that use <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A></FONT></TH>
\r
92 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
93 <TD><A HREF="#compbio.data.msa"><B>compbio.data.msa</B></A></TD>
\r
94 <TD>Web Service interfaces for JAva Bioinformatics Analysis Web Services. </TD>
\r
96 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
97 <TD><A HREF="#compbio.data.msa.jaxws"><B>compbio.data.msa.jaxws</B></A></TD>
\r
98 <TD> </TD>
\r
100 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
101 <TD><A HREF="#compbio.ws.client"><B>compbio.ws.client</B></A></TD>
\r
102 <TD>A command line client and web services testing client for
103 JAva Bioinformatics Analysis Web Services. </TD>
\r
105 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
106 <TD><A HREF="#compbio.ws.server"><B>compbio.ws.server</B></A></TD>
\r
107 <TD> </TD>
\r
112 <A NAME="compbio.data.msa"><!-- --></A>
\r
113 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
114 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
115 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
116 Classes in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A> used by <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A></FONT></TH>
\r
118 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
119 <TD><B><A HREF="../../../compbio/data/msa/class-use/Category.html#compbio.data.msa"><B>Category</B></A></B>
\r
122 Class that splits <A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client"><CODE>Services</CODE></A> to categories.</TD>
\r
124 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
125 <TD><B><A HREF="../../../compbio/data/msa/class-use/JABAService.html#compbio.data.msa"><B>JABAService</B></A></B>
\r
128 This is a marker interface, contains no methods</TD>
\r
130 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
131 <TD><B><A HREF="../../../compbio/data/msa/class-use/JManagement.html#compbio.data.msa"><B>JManagement</B></A></B>
\r
134 </TD>
\r
136 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
137 <TD><B><A HREF="../../../compbio/data/msa/class-use/Metadata.html#compbio.data.msa"><B>Metadata</B></A></B>
\r
140 </TD>
\r
145 <A NAME="compbio.data.msa.jaxws"><!-- --></A>
\r
146 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
147 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
148 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
149 Classes in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A> used by <A HREF="../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A></FONT></TH>
\r
151 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
152 <TD><B><A HREF="../../../compbio/data/msa/class-use/Category.html#compbio.data.msa.jaxws"><B>Category</B></A></B>
\r
155 Class that splits <A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client"><CODE>Services</CODE></A> to categories.</TD>
\r
160 <A NAME="compbio.ws.client"><!-- --></A>
\r
161 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
162 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
163 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
164 Classes in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A> used by <A HREF="../../../compbio/ws/client/package-summary.html">compbio.ws.client</A></FONT></TH>
\r
166 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
167 <TD><B><A HREF="../../../compbio/data/msa/class-use/JABAService.html#compbio.ws.client"><B>JABAService</B></A></B>
\r
170 This is a marker interface, contains no methods</TD>
\r
172 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
173 <TD><B><A HREF="../../../compbio/data/msa/class-use/RegistryWS.html#compbio.ws.client"><B>RegistryWS</B></A></B>
\r
176 JABAWS services registry</TD>
\r
178 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
179 <TD><B><A HREF="../../../compbio/data/msa/class-use/SequenceAnnotation.html#compbio.ws.client"><B>SequenceAnnotation</B></A></B>
\r
182 Interface for tools that results to one or more annotation to sequence(s)
184 Single, multiple sequences their groups or alignments can be annotated</TD>
\r
189 <A NAME="compbio.ws.server"><!-- --></A>
\r
190 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
191 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
192 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
193 Classes in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A> used by <A HREF="../../../compbio/ws/server/package-summary.html">compbio.ws.server</A></FONT></TH>
\r
195 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
196 <TD><B><A HREF="../../../compbio/data/msa/class-use/Category.html#compbio.ws.server"><B>Category</B></A></B>
\r
199 Class that splits <A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client"><CODE>Services</CODE></A> to categories.</TD>
\r
201 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
202 <TD><B><A HREF="../../../compbio/data/msa/class-use/JABAService.html#compbio.ws.server"><B>JABAService</B></A></B>
\r
205 This is a marker interface, contains no methods</TD>
\r
207 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
208 <TD><B><A HREF="../../../compbio/data/msa/class-use/JManagement.html#compbio.ws.server"><B>JManagement</B></A></B>
\r
211 </TD>
\r
213 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
214 <TD><B><A HREF="../../../compbio/data/msa/class-use/Metadata.html#compbio.ws.server"><B>Metadata</B></A></B>
\r
217 </TD>
\r
219 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
220 <TD><B><A HREF="../../../compbio/data/msa/class-use/MsaWS.html#compbio.ws.server"><B>MsaWS</B></A></B>
\r
223 Multiple Sequence Alignment (MSA) Web Services Interface</TD>
\r
225 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
226 <TD><B><A HREF="../../../compbio/data/msa/class-use/RegistryWS.html#compbio.ws.server"><B>RegistryWS</B></A></B>
\r
229 JABAWS services registry</TD>
\r
231 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
232 <TD><B><A HREF="../../../compbio/data/msa/class-use/SequenceAnnotation.html#compbio.ws.server"><B>SequenceAnnotation</B></A></B>
\r
235 Interface for tools that results to one or more annotation to sequence(s)
237 Single, multiple sequences their groups or alignments can be annotated</TD>
\r
245 <!-- ======= START OF BOTTOM NAVBAR ====== -->
\r
246 <A NAME="navbar_bottom"><!-- --></A>
\r
247 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>
\r
248 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">
\r
250 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">
\r
251 <A NAME="navbar_bottom_firstrow"><!-- --></A>
\r
252 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">
\r
253 <TR ALIGN="center" VALIGN="top">
\r
254 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A> </TD>
\r
255 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A> </TD>
\r
256 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Class</FONT> </TD>
\r
257 <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> <FONT CLASS="NavBarFont1Rev"><B>Use</B></FONT> </TD>
\r
258 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A> </TD>
\r
259 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A> </TD>
\r
260 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A> </TD>
\r
261 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A> </TD>
\r
265 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
\r
271 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
\r
273 NEXT</FONT></TD>
\r
274 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
\r
275 <A HREF="../../../index.html?compbio/data/msa/package-use.html" target="_top"><B>FRAMES</B></A>
\r
276 <A HREF="package-use.html" target="_top"><B>NO FRAMES</B></A>
\r
277 <SCRIPT type="text/javascript">
\r
280 document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');
\r
285 <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>
\r
292 <A NAME="skip-navbar_bottom"></A>
\r
293 <!-- ======== END OF BOTTOM NAVBAR ======= -->
\r