website/full_javadoc/compbio/data/msa/package-use.html

   1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">\r
   2 <!--NewPage-->\r
   3 <HTML>\r
   4 <HEAD>\r
   5 <!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:30:43 GMT 2011 -->\r
   6 <TITLE>\r
   7 Uses of Package compbio.data.msa\r
   8 </TITLE>\r
   9 \r
  10 <META NAME="date" CONTENT="2011-12-07">\r
  11 \r
  12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">\r
  13 \r
  14 <SCRIPT type="text/javascript">\r
  15 function windowTitle()\r
  16 {\r
  17     if (location.href.indexOf('is-external=true') == -1) {\r
  18         parent.document.title="Uses of Package compbio.data.msa";\r
  19     }\r
  20 }\r
  21 </SCRIPT>\r
  22 <NOSCRIPT>\r
  23 </NOSCRIPT>\r
  24 \r
  25 </HEAD>\r
  26 \r
  27 <BODY BGCOLOR="white" onload="windowTitle();">\r
  28 <HR>\r
  29 \r
  30 \r
  31 <!-- ========= START OF TOP NAVBAR ======= -->\r
  32 <A NAME="navbar_top"><!-- --></A>\r
  33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>\r
  34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
  35 <TR>\r
  36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
  37 <A NAME="navbar_top_firstrow"><!-- --></A>\r
  38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
  39   <TR ALIGN="center" VALIGN="top">\r
  40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
  41   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
  42   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Class</FONT>&nbsp;</TD>\r
  43   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Use</B></FONT>&nbsp;</TD>\r
  44   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
  45   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
  46   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
  47   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
  48   </TR>\r
  49 </TABLE>\r
  50 </TD>\r
  51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
  52 </EM>\r
  53 </TD>\r
  54 </TR>\r
  55 \r
  56 <TR>\r
  57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
  58 &nbsp;PREV&nbsp;\r
  59 &nbsp;NEXT</FONT></TD>\r
  60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
  61   <A HREF="../../../index.html?compbio/data/msa/package-use.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
  62 &nbsp;<A HREF="package-use.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
  63 &nbsp;<SCRIPT type="text/javascript">\r
  64   <!--\r
  65   if(window==top) {\r
  66     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
  67   }\r
  68   //-->\r
  69 </SCRIPT>\r
  70 <NOSCRIPT>\r
  71   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
  72 </NOSCRIPT>\r
  73 \r
  74 \r
  75 </FONT></TD>\r
  76 </TR>\r
  77 </TABLE>\r
  78 <A NAME="skip-navbar_top"></A>\r
  79 <!-- ========= END OF TOP NAVBAR ========= -->\r
  80 \r
  81 <HR>\r
  82 <CENTER>\r
  83 <H2>\r
  84 <B>Uses of Package<br>compbio.data.msa</B></H2>\r
  85 </CENTER>\r
  86 \r
  87 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
  88 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
  89 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
  90 Packages that use <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A></FONT></TH>\r
  91 </TR>\r
  92 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  93 <TD><A HREF="#compbio.data.msa"><B>compbio.data.msa</B></A></TD>\r
  94 <TD>Web Service interfaces for JAva Bioinformatics Analysis Web Services.&nbsp;</TD>\r
  95 </TR>\r
  96 <TR BGCOLOR="white" CLASS="TableRowColor">\r
  97 <TD><A HREF="#compbio.data.msa.jaxws"><B>compbio.data.msa.jaxws</B></A></TD>\r
  98 <TD>&nbsp;&nbsp;</TD>\r
  99 </TR>\r
 100 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 101 <TD><A HREF="#compbio.ws.client"><B>compbio.ws.client</B></A></TD>\r
 102 <TD>A command line client and web services testing client for
 103  JAva Bioinformatics Analysis Web Services.&nbsp;</TD>\r
 104 </TR>\r
 105 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 106 <TD><A HREF="#compbio.ws.server"><B>compbio.ws.server</B></A></TD>\r
 107 <TD>&nbsp;&nbsp;</TD>\r
 108 </TR>\r
 109 </TABLE>\r
 110 &nbsp;\r
 111 <P>\r
 112 <A NAME="compbio.data.msa"><!-- --></A>\r
 113 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 114 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 115 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 116 Classes in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A> used by <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A></FONT></TH>\r
 117 </TR>\r
 118 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 119 <TD><B><A HREF="../../../compbio/data/msa/class-use/Category.html#compbio.data.msa"><B>Category</B></A></B>\r
 120 \r
 121 <BR>\r
 122 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Class that splits <A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client"><CODE>Services</CODE></A> to categories.</TD>\r
 123 </TR>\r
 124 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 125 <TD><B><A HREF="../../../compbio/data/msa/class-use/JABAService.html#compbio.data.msa"><B>JABAService</B></A></B>\r
 126 \r
 127 <BR>\r
 128 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;This is a marker interface, contains no methods</TD>\r
 129 </TR>\r
 130 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 131 <TD><B><A HREF="../../../compbio/data/msa/class-use/JManagement.html#compbio.data.msa"><B>JManagement</B></A></B>\r
 132 \r
 133 <BR>\r
 134 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 135 </TR>\r
 136 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 137 <TD><B><A HREF="../../../compbio/data/msa/class-use/Metadata.html#compbio.data.msa"><B>Metadata</B></A></B>\r
 138 \r
 139 <BR>\r
 140 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 141 </TR>\r
 142 </TABLE>\r
 143 &nbsp;\r
 144 <P>\r
 145 <A NAME="compbio.data.msa.jaxws"><!-- --></A>\r
 146 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 147 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 148 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 149 Classes in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A> used by <A HREF="../../../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A></FONT></TH>\r
 150 </TR>\r
 151 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 152 <TD><B><A HREF="../../../compbio/data/msa/class-use/Category.html#compbio.data.msa.jaxws"><B>Category</B></A></B>\r
 153 \r
 154 <BR>\r
 155 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Class that splits <A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client"><CODE>Services</CODE></A> to categories.</TD>\r
 156 </TR>\r
 157 </TABLE>\r
 158 &nbsp;\r
 159 <P>\r
 160 <A NAME="compbio.ws.client"><!-- --></A>\r
 161 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 162 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 163 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 164 Classes in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A> used by <A HREF="../../../compbio/ws/client/package-summary.html">compbio.ws.client</A></FONT></TH>\r
 165 </TR>\r
 166 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 167 <TD><B><A HREF="../../../compbio/data/msa/class-use/JABAService.html#compbio.ws.client"><B>JABAService</B></A></B>\r
 168 \r
 169 <BR>\r
 170 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;This is a marker interface, contains no methods</TD>\r
 171 </TR>\r
 172 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 173 <TD><B><A HREF="../../../compbio/data/msa/class-use/RegistryWS.html#compbio.ws.client"><B>RegistryWS</B></A></B>\r
 174 \r
 175 <BR>\r
 176 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;JABAWS services registry</TD>\r
 177 </TR>\r
 178 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 179 <TD><B><A HREF="../../../compbio/data/msa/class-use/SequenceAnnotation.html#compbio.ws.client"><B>SequenceAnnotation</B></A></B>\r
 180 \r
 181 <BR>\r
 182 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Interface for tools that results to one or more annotation to sequence(s)
 183
 184  Single, multiple sequences their groups or alignments can be annotated</TD>\r
 185 </TR>\r
 186 </TABLE>\r
 187 &nbsp;\r
 188 <P>\r
 189 <A NAME="compbio.ws.server"><!-- --></A>\r
 190 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 191 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
 192 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
 193 Classes in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A> used by <A HREF="../../../compbio/ws/server/package-summary.html">compbio.ws.server</A></FONT></TH>\r
 194 </TR>\r
 195 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 196 <TD><B><A HREF="../../../compbio/data/msa/class-use/Category.html#compbio.ws.server"><B>Category</B></A></B>\r
 197 \r
 198 <BR>\r
 199 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Class that splits <A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client"><CODE>Services</CODE></A> to categories.</TD>\r
 200 </TR>\r
 201 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 202 <TD><B><A HREF="../../../compbio/data/msa/class-use/JABAService.html#compbio.ws.server"><B>JABAService</B></A></B>\r
 203 \r
 204 <BR>\r
 205 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;This is a marker interface, contains no methods</TD>\r
 206 </TR>\r
 207 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 208 <TD><B><A HREF="../../../compbio/data/msa/class-use/JManagement.html#compbio.ws.server"><B>JManagement</B></A></B>\r
 209 \r
 210 <BR>\r
 211 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 212 </TR>\r
 213 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 214 <TD><B><A HREF="../../../compbio/data/msa/class-use/Metadata.html#compbio.ws.server"><B>Metadata</B></A></B>\r
 215 \r
 216 <BR>\r
 217 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
 218 </TR>\r
 219 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 220 <TD><B><A HREF="../../../compbio/data/msa/class-use/MsaWS.html#compbio.ws.server"><B>MsaWS</B></A></B>\r
 221 \r
 222 <BR>\r
 223 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Multiple Sequence Alignment (MSA) Web Services Interface</TD>\r
 224 </TR>\r
 225 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 226 <TD><B><A HREF="../../../compbio/data/msa/class-use/RegistryWS.html#compbio.ws.server"><B>RegistryWS</B></A></B>\r
 227 \r
 228 <BR>\r
 229 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;JABAWS services registry</TD>\r
 230 </TR>\r
 231 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 232 <TD><B><A HREF="../../../compbio/data/msa/class-use/SequenceAnnotation.html#compbio.ws.server"><B>SequenceAnnotation</B></A></B>\r
 233 \r
 234 <BR>\r
 235 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Interface for tools that results to one or more annotation to sequence(s)
 236
 237  Single, multiple sequences their groups or alignments can be annotated</TD>\r
 238 </TR>\r
 239 </TABLE>\r
 240 &nbsp;\r
 241 <P>\r
 242 <HR>\r
 243 \r
 244 \r
 245 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
 246 <A NAME="navbar_bottom"><!-- --></A>\r
 247 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
 248 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
 249 <TR>\r
 250 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
 251 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
 252 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
 253   <TR ALIGN="center" VALIGN="top">\r
 254   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
 255   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
 256   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <FONT CLASS="NavBarFont1">Class</FONT>&nbsp;</TD>\r
 257   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Use</B></FONT>&nbsp;</TD>\r
 258   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
 259   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
 260   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
 261   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
 262   </TR>\r
 263 </TABLE>\r
 264 </TD>\r
 265 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
 266 </EM>\r
 267 </TD>\r
 268 </TR>\r
 269 \r
 270 <TR>\r
 271 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
 272 &nbsp;PREV&nbsp;\r
 273 &nbsp;NEXT</FONT></TD>\r
 274 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
 275   <A HREF="../../../index.html?compbio/data/msa/package-use.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
 276 &nbsp;<A HREF="package-use.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
 277 &nbsp;<SCRIPT type="text/javascript">\r
 278   <!--\r
 279   if(window==top) {\r
 280     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
 281   }\r
 282   //-->\r
 283 </SCRIPT>\r
 284 <NOSCRIPT>\r
 285   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
 286 </NOSCRIPT>\r
 287 \r
 288 \r
 289 </FONT></TD>\r
 290 </TR>\r
 291 </TABLE>\r
 292 <A NAME="skip-navbar_bottom"></A>\r
 293 <!-- ======== END OF BOTTOM NAVBAR ======= -->\r
 294 \r
 295 <HR>\r
 296 \r
 297 </BODY>\r
 298 </HTML>\r