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5 <!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:30:42 GMT 2011 -->
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7 compbio.data.sequence
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10 <META NAME="date" CONTENT="2011-12-07">
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12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">
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17 <BODY BGCOLOR="white">
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18 <FONT size="+1" CLASS="FrameTitleFont">
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19 <A HREF="../../../compbio/data/sequence/package-summary.html" target="classFrame">compbio.data.sequence</A></FONT>
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20 <TABLE BORDER="0" WIDTH="100%" SUMMARY="">
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22 <TD NOWRAP><FONT size="+1" CLASS="FrameHeadingFont">
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23 Classes</FONT>
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24 <FONT CLASS="FrameItemFont">
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26 <A HREF="Alignment.html" title="class in compbio.data.sequence" target="classFrame">Alignment</A>
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28 <A HREF="AlignmentMetadata.html" title="class in compbio.data.sequence" target="classFrame">AlignmentMetadata</A>
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30 <A HREF="ClustalAlignmentUtil.html" title="class in compbio.data.sequence" target="classFrame">ClustalAlignmentUtil</A>
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32 <A HREF="FastaReader.html" title="class in compbio.data.sequence" target="classFrame">FastaReader</A>
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34 <A HREF="FastaSequence.html" title="class in compbio.data.sequence" target="classFrame">FastaSequence</A>
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36 <A HREF="Range.html" title="class in compbio.data.sequence" target="classFrame">Range</A>
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38 <A HREF="Score.html" title="class in compbio.data.sequence" target="classFrame">Score</A>
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40 <A HREF="ScoreManager.html" title="class in compbio.data.sequence" target="classFrame">ScoreManager</A>
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42 <A HREF="ScoreManager.ScoreHolder.html" title="class in compbio.data.sequence" target="classFrame">ScoreManager.ScoreHolder</A>
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44 <A HREF="SequenceUtil.html" title="class in compbio.data.sequence" target="classFrame">SequenceUtil</A></FONT></TD>
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49 <TABLE BORDER="0" WIDTH="100%" SUMMARY="">
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51 <TD NOWRAP><FONT size="+1" CLASS="FrameHeadingFont">
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53 <FONT CLASS="FrameItemFont">
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55 <A HREF="ConservationMethod.html" title="enum in compbio.data.sequence" target="classFrame">ConservationMethod</A>
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57 <A HREF="DisorderMethod.html" title="enum in compbio.data.sequence" target="classFrame">DisorderMethod</A>
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59 <A HREF="Program.html" title="enum in compbio.data.sequence" target="classFrame">Program</A>
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61 <A HREF="SMERFSConstraints.html" title="enum in compbio.data.sequence" target="classFrame">SMERFSConstraints</A></FONT></TD>
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66 <TABLE BORDER="0" WIDTH="100%" SUMMARY="">
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68 <TD NOWRAP><FONT size="+1" CLASS="FrameHeadingFont">
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69 Exceptions</FONT>
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70 <FONT CLASS="FrameItemFont">
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72 <A HREF="UnknownFileFormatException.html" title="class in compbio.data.sequence" target="classFrame">UnknownFileFormatException</A></FONT></TD>
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