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79 SUMMARY: NESTED | <A HREF="#field_summary">FIELD</A> | <A HREF="#constructor_summary">CONSTR</A> | <A HREF="#method_summary">METHOD</A></FONT></TD>
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85 <!-- ========= END OF TOP NAVBAR ========= -->
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88 <!-- ======== START OF CLASS DATA ======== -->
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91 compbio.engine</FONT>
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93 Class Configurator</H2>
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96 <IMG SRC="../../resources/inherit.gif" ALT="extended by "><B>compbio.engine.Configurator</B>
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100 <DT><PRE>public class <B>Configurator</B><DT>extends java.lang.Object</DL>
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107 <!-- =========== FIELD SUMMARY =========== -->
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109 <A NAME="field_summary"><!-- --></A>
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110 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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112 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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113 <B>Field Summary</B></FONT></TH>
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115 <TR BGCOLOR="white" CLASS="TableRowColor">
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116 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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117 <CODE>static java.lang.String</CODE></FONT></TD>
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118 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#CLUSTER_WORK_DIRECTORY">CLUSTER_WORK_DIRECTORY</A></B></CODE>
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121 </TD>
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123 <TR BGCOLOR="white" CLASS="TableRowColor">
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124 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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125 <CODE>static boolean</CODE></FONT></TD>
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126 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#IS_CLUSTER_ENGINE_ENABLED">IS_CLUSTER_ENGINE_ENABLED</A></B></CODE>
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129 </TD>
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131 <TR BGCOLOR="white" CLASS="TableRowColor">
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132 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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133 <CODE>static boolean</CODE></FONT></TD>
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134 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#IS_LOCAL_ENGINE_ENABLED">IS_LOCAL_ENGINE_ENABLED</A></B></CODE>
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137 </TD>
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139 <TR BGCOLOR="white" CLASS="TableRowColor">
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140 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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141 <CODE>static java.lang.String</CODE></FONT></TD>
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142 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#LOCAL_WORK_DIRECTORY">LOCAL_WORK_DIRECTORY</A></B></CODE>
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145 </TD>
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149 <!-- ======== CONSTRUCTOR SUMMARY ======== -->
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154 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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155 <B>Constructor Summary</B></FONT></TH>
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157 <TR BGCOLOR="white" CLASS="TableRowColor">
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158 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#Configurator()">Configurator</A></B>()</CODE>
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161 </TD>
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165 <!-- ========== METHOD SUMMARY =========== -->
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171 <B>Method Summary</B></FONT></TH>
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173 <TR BGCOLOR="white" CLASS="TableRowColor">
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174 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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176 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">
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177 <TR ALIGN="right" VALIGN="">
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178 <TD NOWRAP><FONT SIZE="-1">
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179 <CODE><T> <A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><T></CODE></FONT></TD>
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182 </CODE></FONT></TD>
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183 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#configureExecutable(compbio.engine.client.Executable)">configureExecutable</A></B>(<A HREF="../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A><T> executable)</CODE>
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186 </TD>
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188 <TR BGCOLOR="white" CLASS="TableRowColor">
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189 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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191 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">
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192 <TR ALIGN="right" VALIGN="">
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193 <TD NOWRAP><FONT SIZE="-1">
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194 <CODE><T> <A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><T></CODE></FONT></TD>
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197 </CODE></FONT></TD>
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198 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#configureExecutable(compbio.engine.client.Executable, compbio.engine.client.Executable.ExecProvider)">configureExecutable</A></B>(<A HREF="../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A><T> executable,
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199 <A HREF="../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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202 </TD>
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204 <TR BGCOLOR="white" CLASS="TableRowColor">
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205 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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207 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">
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208 <TR ALIGN="right" VALIGN="">
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209 <TD NOWRAP><FONT SIZE="-1">
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210 <CODE><T> <A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><T></CODE></FONT></TD>
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213 </CODE></FONT></TD>
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214 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#configureExecutable(compbio.engine.client.Executable, java.util.List)">configureExecutable</A></B>(<A HREF="../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A><T> executable,
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215 java.util.List<<A HREF="../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>> dataSet)</CODE>
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218 </TD>
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220 <TR BGCOLOR="white" CLASS="TableRowColor">
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221 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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222 <CODE>static <A HREF="../../compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</A></CODE></FONT></TD>
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223 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#getAsyncEngine(compbio.engine.client.ConfiguredExecutable)">getAsyncEngine</A></B>(<A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><?> executable)</CODE>
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226 </TD>
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228 <TR BGCOLOR="white" CLASS="TableRowColor">
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229 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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230 <CODE>static <A HREF="../../compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</A></CODE></FONT></TD>
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231 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#getAsyncEngine(compbio.engine.client.ConfiguredExecutable, compbio.engine.client.Executable.ExecProvider)">getAsyncEngine</A></B>(<A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><?> executable,
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232 <A HREF="../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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235 </TD>
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237 <TR BGCOLOR="white" CLASS="TableRowColor">
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238 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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239 <CODE>static <A HREF="../../compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</A></CODE></FONT></TD>
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240 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#getAsyncEngine(java.lang.String)">getAsyncEngine</A></B>(java.lang.String taskId)</CODE>
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243 </TD>
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245 <TR BGCOLOR="white" CLASS="TableRowColor">
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246 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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247 <CODE>static <A HREF="../../compbio/engine/SyncExecutor.html" title="interface in compbio.engine">SyncExecutor</A></CODE></FONT></TD>
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248 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#getSyncEngine(compbio.engine.client.ConfiguredExecutable)">getSyncEngine</A></B>(<A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><?> executable)</CODE>
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251 </TD>
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253 <TR BGCOLOR="white" CLASS="TableRowColor">
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254 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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255 <CODE>static <A HREF="../../compbio/engine/SyncExecutor.html" title="interface in compbio.engine">SyncExecutor</A></CODE></FONT></TD>
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256 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#getSyncEngine(compbio.engine.client.ConfiguredExecutable, compbio.engine.client.Executable.ExecProvider)">getSyncEngine</A></B>(<A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><?> executable,
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257 <A HREF="../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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260 </TD>
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262 <TR BGCOLOR="white" CLASS="TableRowColor">
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263 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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264 <CODE>static java.lang.String</CODE></FONT></TD>
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265 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#getWorkDirectory(java.lang.String)">getWorkDirectory</A></B>(java.lang.String taskId)</CODE>
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268 </TD>
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271 <A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>
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272 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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273 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
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274 <TH ALIGN="left"><B>Methods inherited from class java.lang.Object</B></TH>
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276 <TR BGCOLOR="white" CLASS="TableRowColor">
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277 <TD><CODE>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</CODE></TD>
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283 <!-- ============ FIELD DETAIL =========== -->
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285 <A NAME="field_detail"><!-- --></A>
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286 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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287 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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288 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
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289 <B>Field Detail</B></FONT></TH>
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293 <A NAME="IS_LOCAL_ENGINE_ENABLED"><!-- --></A><H3>
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294 IS_LOCAL_ENGINE_ENABLED</H3>
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296 public static final boolean <B>IS_LOCAL_ENGINE_ENABLED</B></PRE>
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303 <A NAME="IS_CLUSTER_ENGINE_ENABLED"><!-- --></A><H3>
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304 IS_CLUSTER_ENGINE_ENABLED</H3>
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306 public static final boolean <B>IS_CLUSTER_ENGINE_ENABLED</B></PRE>
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313 <A NAME="LOCAL_WORK_DIRECTORY"><!-- --></A><H3>
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314 LOCAL_WORK_DIRECTORY</H3>
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316 public static final java.lang.String <B>LOCAL_WORK_DIRECTORY</B></PRE>
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323 <A NAME="CLUSTER_WORK_DIRECTORY"><!-- --></A><H3>
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324 CLUSTER_WORK_DIRECTORY</H3>
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326 public static final java.lang.String <B>CLUSTER_WORK_DIRECTORY</B></PRE>
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332 <!-- ========= CONSTRUCTOR DETAIL ======== -->
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334 <A NAME="constructor_detail"><!-- --></A>
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335 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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336 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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337 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
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338 <B>Constructor Detail</B></FONT></TH>
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342 <A NAME="Configurator()"><!-- --></A><H3>
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345 public <B>Configurator</B>()</PRE>
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349 <!-- ============ METHOD DETAIL ========== -->
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351 <A NAME="method_detail"><!-- --></A>
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352 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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353 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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354 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
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355 <B>Method Detail</B></FONT></TH>
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359 <A NAME="configureExecutable(compbio.engine.client.Executable)"><!-- --></A><H3>
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360 configureExecutable</H3>
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362 public static <T> <A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><T> <B>configureExecutable</B>(<A HREF="../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A><T> executable)
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363 throws <A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></PRE>
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368 <DD><CODE><A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></CODE></DL>
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373 <A NAME="configureExecutable(compbio.engine.client.Executable, java.util.List)"><!-- --></A><H3>
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374 configureExecutable</H3>
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376 public static <T> <A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><T> <B>configureExecutable</B>(<A HREF="../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A><T> executable,
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377 java.util.List<<A HREF="../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>> dataSet)
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378 throws <A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></PRE>
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383 <DD><CODE><A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></CODE></DL>
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388 <A NAME="configureExecutable(compbio.engine.client.Executable, compbio.engine.client.Executable.ExecProvider)"><!-- --></A><H3>
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389 configureExecutable</H3>
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391 public static <T> <A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><T> <B>configureExecutable</B>(<A HREF="../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A><T> executable,
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392 <A HREF="../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)
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393 throws <A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></PRE>
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398 <DD><CODE><A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></CODE></DL>
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403 <A NAME="getAsyncEngine(compbio.engine.client.ConfiguredExecutable, compbio.engine.client.Executable.ExecProvider)"><!-- --></A><H3>
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404 getAsyncEngine</H3>
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406 public static <A HREF="../../compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</A> <B>getAsyncEngine</B>(<A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><?> executable,
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407 <A HREF="../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</PRE>
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415 <A NAME="getSyncEngine(compbio.engine.client.ConfiguredExecutable, compbio.engine.client.Executable.ExecProvider)"><!-- --></A><H3>
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418 public static <A HREF="../../compbio/engine/SyncExecutor.html" title="interface in compbio.engine">SyncExecutor</A> <B>getSyncEngine</B>(<A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><?> executable,
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419 <A HREF="../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)
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420 throws <A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></PRE>
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425 <DD><CODE><A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></CODE></DL>
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430 <A NAME="getAsyncEngine(compbio.engine.client.ConfiguredExecutable)"><!-- --></A><H3>
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431 getAsyncEngine</H3>
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433 public static <A HREF="../../compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</A> <B>getAsyncEngine</B>(<A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><?> executable)</PRE>
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441 <A NAME="getAsyncEngine(java.lang.String)"><!-- --></A><H3>
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442 getAsyncEngine</H3>
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444 public static <A HREF="../../compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</A> <B>getAsyncEngine</B>(java.lang.String taskId)</PRE>
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452 <A NAME="getSyncEngine(compbio.engine.client.ConfiguredExecutable)"><!-- --></A><H3>
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455 public static <A HREF="../../compbio/engine/SyncExecutor.html" title="interface in compbio.engine">SyncExecutor</A> <B>getSyncEngine</B>(<A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><?> executable)
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456 throws <A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></PRE>
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461 <DD><CODE><A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></CODE></DL>
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466 <A NAME="getWorkDirectory(java.lang.String)"><!-- --></A><H3>
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467 getWorkDirectory</H3>
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469 public static java.lang.String <B>getWorkDirectory</B>(java.lang.String taskId)</PRE>
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475 <!-- ========= END OF CLASS DATA ========= -->
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479 <!-- ======= START OF BOTTOM NAVBAR ====== -->
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480 <A NAME="navbar_bottom"><!-- --></A>
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488 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A> </TD>
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489 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A> </TD>
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490 <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> <FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT> </TD>
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491 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="class-use/Configurator.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A> </TD>
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494 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A> </TD>
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495 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A> </TD>
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499 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
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505 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
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506 <A HREF="../../compbio/engine/ClusterJobId.html" title="class in compbio.engine"><B>PREV CLASS</B></A>
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