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18 parent.document.title="FilePuller";
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79 SUMMARY: NESTED | FIELD | CONSTR | <A HREF="#method_summary">METHOD</A></FONT></TD>
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81 DETAIL: FIELD | CONSTR | <A HREF="#method_detail">METHOD</A></FONT></TD>
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85 <!-- ========= END OF TOP NAVBAR ========= -->
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88 <!-- ======== START OF CLASS DATA ======== -->
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91 compbio.engine</FONT>
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93 Class FilePuller</H2>
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95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>
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96 <IMG SRC="../../resources/inherit.gif" ALT="extended by "><B>compbio.engine.FilePuller</B>
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99 <DT><B>All Implemented Interfaces:</B> <DD><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Comparable.html?is-external=true" title="class or interface in java.lang">Comparable</A><<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A>>, <A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A></DD>
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103 <DT><PRE>public class <B>FilePuller</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A><DT>implements <A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A></DL>
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111 <!-- ========== METHOD SUMMARY =========== -->
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113 <A NAME="method_summary"><!-- --></A>
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114 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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115 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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116 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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117 <B>Method Summary</B></FONT></TH>
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119 <TR BGCOLOR="white" CLASS="TableRowColor">
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120 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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121 <CODE> int</CODE></FONT></TD>
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122 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#compareTo(java.util.concurrent.Delayed)">compareTo</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A> o)</CODE>
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125 </TD>
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127 <TR BGCOLOR="white" CLASS="TableRowColor">
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128 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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129 <CODE> void</CODE></FONT></TD>
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130 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#disconnect()">disconnect</A></B>()</CODE>
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133 </TD>
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135 <TR BGCOLOR="white" CLASS="TableRowColor">
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136 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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137 <CODE> boolean</CODE></FONT></TD>
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138 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#equals(java.lang.Object)">equals</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A> obj)</CODE>
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141 </TD>
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143 <TR BGCOLOR="white" CLASS="TableRowColor">
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144 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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145 <CODE> long</CODE></FONT></TD>
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146 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#getDelay(java.util.concurrent.TimeUnit)">getDelay</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/TimeUnit.html?is-external=true" title="class or interface in java.util.concurrent">TimeUnit</A> unit)</CODE>
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149 </TD>
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151 <TR BGCOLOR="white" CLASS="TableRowColor">
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152 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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153 <CODE> <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>
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154 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#getFile()">getFile</A></B>()</CODE>
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157 </TD>
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159 <TR BGCOLOR="white" CLASS="TableRowColor">
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160 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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161 <CODE> byte</CODE></FONT></TD>
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162 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#getProgress()">getProgress</A></B>()</CODE>
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165 </TD>
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167 <TR BGCOLOR="white" CLASS="TableRowColor">
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168 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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169 <CODE> int</CODE></FONT></TD>
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170 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#hashCode()">hashCode</A></B>()</CODE>
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173 </TD>
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175 <TR BGCOLOR="white" CLASS="TableRowColor">
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176 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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177 <CODE> boolean</CODE></FONT></TD>
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178 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#hasMoreData()">hasMoreData</A></B>()</CODE>
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181 </TD>
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183 <TR BGCOLOR="white" CLASS="TableRowColor">
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184 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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185 <CODE> void</CODE></FONT></TD>
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186 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#initPull()">initPull</A></B>()</CODE>
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189 </TD>
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191 <TR BGCOLOR="white" CLASS="TableRowColor">
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192 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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193 <CODE> boolean</CODE></FONT></TD>
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194 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#isFileCreated()">isFileCreated</A></B>()</CODE>
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197 </TD>
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199 <TR BGCOLOR="white" CLASS="TableRowColor">
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200 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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201 <CODE>static <A HREF="../../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A></CODE></FONT></TD>
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202 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#newFilePuller(java.lang.String, int)">newFilePuller</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> file,
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203 int chunkSize)</CODE>
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206 </TD>
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208 <TR BGCOLOR="white" CLASS="TableRowColor">
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209 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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210 <CODE>static <A HREF="../../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A></CODE></FONT></TD>
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211 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#newProgressPuller(java.lang.String)">newProgressPuller</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> file)</CODE>
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214 Progress Puller is designed to read 3 characters from the beginning of
215 the file, nothing more.</TD>
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217 <TR BGCOLOR="white" CLASS="TableRowColor">
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218 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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219 <CODE> <A HREF="../../compbio/metadata/ChunkHolder.html" title="class in compbio.metadata">ChunkHolder</A></CODE></FONT></TD>
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220 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#pull(long)">pull</A></B>(long position)</CODE>
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223 </TD>
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225 <TR BGCOLOR="white" CLASS="TableRowColor">
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226 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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227 <CODE> <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>
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228 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#toString()">toString</A></B>()</CODE>
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231 </TD>
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233 <TR BGCOLOR="white" CLASS="TableRowColor">
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234 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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235 <CODE> void</CODE></FONT></TD>
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236 <TD><CODE><B><A HREF="../../compbio/engine/FilePuller.html#waitForFile(long)">waitForFile</A></B>(long maxWaitSeconds)</CODE>
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239 </TD>
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242 <A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>
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243 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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244 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
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245 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>
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247 <TR BGCOLOR="white" CLASS="TableRowColor">
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248 <TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>
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254 <!-- ============ METHOD DETAIL ========== -->
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256 <A NAME="method_detail"><!-- --></A>
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257 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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258 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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259 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
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260 <B>Method Detail</B></FONT></TH>
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264 <A NAME="newFilePuller(java.lang.String, int)"><!-- --></A><H3>
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267 public static <A HREF="../../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A> <B>newFilePuller</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> file,
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268 int chunkSize)</PRE>
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279 <A NAME="newProgressPuller(java.lang.String)"><!-- --></A><H3>
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280 newProgressPuller</H3>
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282 public static <A HREF="../../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A> <B>newProgressPuller</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> file)</PRE>
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284 <DD>Progress Puller is designed to read 3 characters from the beginning of
285 the file, nothing more. Intended to be used in conjunction with a tool
286 which output progress as a percent value from 0 to 100. In any cases
287 progress could not be more than the largest byte value 255.
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293 <DT><B>Parameters:</B><DD><CODE>file</CODE> -
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294 <DT><B>Returns:</B><DD>instance</DL>
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299 <A NAME="pull(long)"><!-- --></A><H3>
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302 public <A HREF="../../compbio/metadata/ChunkHolder.html" title="class in compbio.metadata">ChunkHolder</A> <B>pull</B>(long position)
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303 throws <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></PRE>
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311 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></CODE></DL>
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316 <A NAME="initPull()"><!-- --></A><H3>
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319 public void <B>initPull</B>()</PRE>
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330 <A NAME="getFile()"><!-- --></A><H3>
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333 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getFile</B>()</PRE>
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344 <A NAME="isFileCreated()"><!-- --></A><H3>
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347 public boolean <B>isFileCreated</B>()</PRE>
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358 <A NAME="waitForFile(long)"><!-- --></A><H3>
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361 public void <B>waitForFile</B>(long maxWaitSeconds)</PRE>
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372 <A NAME="hasMoreData()"><!-- --></A><H3>
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375 public boolean <B>hasMoreData</B>()
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376 throws <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></PRE>
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384 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></CODE></DL>
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389 <A NAME="compareTo(java.util.concurrent.Delayed)"><!-- --></A><H3>
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392 public int <B>compareTo</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A> o)</PRE>
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395 <DT><B>Specified by:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Comparable.html?is-external=true#compareTo(T)" title="class or interface in java.lang">compareTo</A></CODE> in interface <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Comparable.html?is-external=true" title="class or interface in java.lang">Comparable</A><<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A>></CODE></DL>
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403 <A NAME="getDelay(java.util.concurrent.TimeUnit)"><!-- --></A><H3>
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406 public long <B>getDelay</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/TimeUnit.html?is-external=true" title="class or interface in java.util.concurrent">TimeUnit</A> unit)</PRE>
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409 <DT><B>Specified by:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true#getDelay(java.util.concurrent.TimeUnit)" title="class or interface in java.util.concurrent">getDelay</A></CODE> in interface <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Delayed.html?is-external=true" title="class or interface in java.util.concurrent">Delayed</A></CODE></DL>
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417 <A NAME="disconnect()"><!-- --></A><H3>
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420 public void <B>disconnect</B>()</PRE>
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431 <A NAME="toString()"><!-- --></A><H3>
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434 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>toString</B>()</PRE>
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437 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>
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445 <A NAME="equals(java.lang.Object)"><!-- --></A><H3>
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448 public boolean <B>equals</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A> obj)</PRE>
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451 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>
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459 <A NAME="hashCode()"><!-- --></A><H3>
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462 public int <B>hashCode</B>()</PRE>
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465 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>
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473 <A NAME="getProgress()"><!-- --></A><H3>
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476 public byte <B>getProgress</B>()
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477 throws <A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></PRE>
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485 <DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/io/IOException.html?is-external=true" title="class or interface in java.io">IOException</A></CODE></DL>
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488 <!-- ========= END OF CLASS DATA ========= -->
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493 <A NAME="navbar_bottom"><!-- --></A>
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494 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>
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495 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">
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498 <A NAME="navbar_bottom_firstrow"><!-- --></A>
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500 <TR ALIGN="center" VALIGN="top">
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501 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A> </TD>
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504 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="class-use/FilePuller.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A> </TD>
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508 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A> </TD>
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512 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
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518 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
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519 <A HREF="../../compbio/engine/Configurator.html" title="class in compbio.engine"><B>PREV CLASS</B></A>
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520 <A HREF="../../compbio/engine/Job.html" title="class in compbio.engine"><B>NEXT CLASS</B></A></FONT></TD>
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521 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
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522 <A HREF="../../index.html?compbio/engine/FilePuller.html" target="_top"><B>FRAMES</B></A>
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523 <A HREF="FilePuller.html" target="_top"><B>NO FRAMES</B></A>
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524 <SCRIPT type="text/javascript">
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527 document.writeln('<A HREF="../../allclasses-noframe.html"><B>All Classes</B></A>');
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532 <A HREF="../../allclasses-noframe.html"><B>All Classes</B></A>
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539 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">
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