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85 <!-- ========= END OF TOP NAVBAR ========= -->
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88 <!-- ======== START OF CLASS DATA ======== -->
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91 compbio.engine.client</FONT>
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93 Class CommandBuilder<T></H2>
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95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>
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96 <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.engine.client.CommandBuilder<T></B>
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100 <DT><PRE>public class <B>CommandBuilder<T></B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>
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108 <!-- ======== CONSTRUCTOR SUMMARY ======== -->
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110 <A NAME="constructor_summary"><!-- --></A>
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111 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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112 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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113 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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114 <B>Constructor Summary</B></FONT></TH>
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116 <TR BGCOLOR="white" CLASS="TableRowColor">
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117 <TD><CODE><B><A HREF="../../../compbio/engine/client/CommandBuilder.html#CommandBuilder(java.lang.String)">CommandBuilder</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> nameValueSeparator)</CODE>
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128 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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129 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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130 <B>Method Summary</B></FONT></TH>
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132 <TR BGCOLOR="white" CLASS="TableRowColor">
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133 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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134 <CODE> void</CODE></FONT></TD>
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135 <TD><CODE><B><A HREF="../../../compbio/engine/client/CommandBuilder.html#addParams(java.util.List)">addParams</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A><<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>> params)</CODE>
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138 </TD>
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140 <TR BGCOLOR="white" CLASS="TableRowColor">
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141 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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142 <CODE> boolean</CODE></FONT></TD>
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143 <TD><CODE><B><A HREF="../../../compbio/engine/client/CommandBuilder.html#equals(java.lang.Object)">equals</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A> obj)</CODE>
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146 </TD>
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148 <TR BGCOLOR="white" CLASS="TableRowColor">
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149 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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150 <CODE> <A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A><<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>></CODE></FONT></TD>
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151 <TD><CODE><B><A HREF="../../../compbio/engine/client/CommandBuilder.html#getCommands()">getCommands</A></B>()</CODE>
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154 </TD>
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156 <TR BGCOLOR="white" CLASS="TableRowColor">
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157 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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158 <CODE> <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>
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159 <TD><CODE><B><A HREF="../../../compbio/engine/client/CommandBuilder.html#getCommandString()">getCommandString</A></B>()</CODE>
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162 </TD>
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164 <TR BGCOLOR="white" CLASS="TableRowColor">
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165 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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166 <CODE> <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>
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167 <TD><CODE><B><A HREF="../../../compbio/engine/client/CommandBuilder.html#getParamValue(java.lang.String)">getParamValue</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> paramName)</CODE>
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170 </TD>
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172 <TR BGCOLOR="white" CLASS="TableRowColor">
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173 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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174 <CODE> int</CODE></FONT></TD>
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175 <TD><CODE><B><A HREF="../../../compbio/engine/client/CommandBuilder.html#hashCode()">hashCode</A></B>()</CODE>
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178 </TD>
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180 <TR BGCOLOR="white" CLASS="TableRowColor">
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181 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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182 <CODE> boolean</CODE></FONT></TD>
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183 <TD><CODE><B><A HREF="../../../compbio/engine/client/CommandBuilder.html#hasParam(java.lang.String)">hasParam</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> paramName)</CODE>
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186 </TD>
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188 <TR BGCOLOR="white" CLASS="TableRowColor">
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189 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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191 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">
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192 <TR ALIGN="right" VALIGN="">
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193 <TD NOWRAP><FONT SIZE="-1">
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194 <CODE><T> <A HREF="../../../compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client">CommandBuilder</A><T></CODE></FONT></TD>
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197 </CODE></FONT></TD>
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198 <TD><CODE><B><A HREF="../../../compbio/engine/client/CommandBuilder.html#newCommandBuilder(java.util.List, java.lang.String)">newCommandBuilder</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A><? extends <A HREF="../../../compbio/metadata/Option.html" title="class in compbio.metadata">Option</A><T>> arguments,
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199 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> nameValueSeparator)</CODE>
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202 This produces the same result as getCommands method.</TD>
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204 <TR BGCOLOR="white" CLASS="TableRowColor">
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205 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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206 <CODE> boolean</CODE></FONT></TD>
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207 <TD><CODE><B><A HREF="../../../compbio/engine/client/CommandBuilder.html#removeParam(java.lang.String)">removeParam</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> paramName)</CODE>
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210 </TD>
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212 <TR BGCOLOR="white" CLASS="TableRowColor">
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213 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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214 <CODE> boolean</CODE></FONT></TD>
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215 <TD><CODE><B><A HREF="../../../compbio/engine/client/CommandBuilder.html#setFirst(java.lang.String)">setFirst</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> param)</CODE>
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218 </TD>
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220 <TR BGCOLOR="white" CLASS="TableRowColor">
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221 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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222 <CODE> boolean</CODE></FONT></TD>
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223 <TD><CODE><B><A HREF="../../../compbio/engine/client/CommandBuilder.html#setLast(java.lang.String)">setLast</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> paramName)</CODE>
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226 </TD>
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228 <TR BGCOLOR="white" CLASS="TableRowColor">
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229 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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230 <CODE> boolean</CODE></FONT></TD>
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231 <TD><CODE><B><A HREF="../../../compbio/engine/client/CommandBuilder.html#setLast(java.lang.String, java.lang.String)">setLast</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> paramName,
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232 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> paramValue)</CODE>
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235 </TD>
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237 <TR BGCOLOR="white" CLASS="TableRowColor">
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238 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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239 <CODE> boolean</CODE></FONT></TD>
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240 <TD><CODE><B><A HREF="../../../compbio/engine/client/CommandBuilder.html#setParam(java.lang.String)">setParam</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> param)</CODE>
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243 </TD>
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245 <TR BGCOLOR="white" CLASS="TableRowColor">
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246 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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247 <CODE> boolean</CODE></FONT></TD>
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248 <TD><CODE><B><A HREF="../../../compbio/engine/client/CommandBuilder.html#setParam(java.lang.String, java.lang.String)">setParam</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> paramName,
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249 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> paramValue)</CODE>
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252 </TD>
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254 <TR BGCOLOR="white" CLASS="TableRowColor">
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255 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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256 <CODE> void</CODE></FONT></TD>
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257 <TD><CODE><B><A HREF="../../../compbio/engine/client/CommandBuilder.html#setParams(java.util.List)">setParams</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A><<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>> params)</CODE>
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260 </TD>
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262 <TR BGCOLOR="white" CLASS="TableRowColor">
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263 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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264 <CODE> int</CODE></FONT></TD>
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265 <TD><CODE><B><A HREF="../../../compbio/engine/client/CommandBuilder.html#size()">size</A></B>()</CODE>
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268 </TD>
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270 <TR BGCOLOR="white" CLASS="TableRowColor">
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271 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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272 <CODE> <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>
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273 <TD><CODE><B><A HREF="../../../compbio/engine/client/CommandBuilder.html#toString()">toString</A></B>()</CODE>
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276 </TD>
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279 <A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>
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280 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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281 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
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282 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>
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284 <TR BGCOLOR="white" CLASS="TableRowColor">
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285 <TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>
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291 <!-- ========= CONSTRUCTOR DETAIL ======== -->
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293 <A NAME="constructor_detail"><!-- --></A>
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294 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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295 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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296 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
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297 <B>Constructor Detail</B></FONT></TH>
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301 <A NAME="CommandBuilder(java.lang.String)"><!-- --></A><H3>
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302 CommandBuilder</H3>
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304 public <B>CommandBuilder</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> nameValueSeparator)</PRE>
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308 <!-- ============ METHOD DETAIL ========== -->
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310 <A NAME="method_detail"><!-- --></A>
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311 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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312 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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313 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
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314 <B>Method Detail</B></FONT></TH>
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318 <A NAME="addParams(java.util.List)"><!-- --></A><H3>
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321 public void <B>addParams</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A><<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>> params)</PRE>
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329 <A NAME="setParams(java.util.List)"><!-- --></A><H3>
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332 public void <B>setParams</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A><<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>> params)</PRE>
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340 <A NAME="hasParam(java.lang.String)"><!-- --></A><H3>
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343 public boolean <B>hasParam</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> paramName)</PRE>
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351 <A NAME="setFirst(java.lang.String)"><!-- --></A><H3>
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354 public boolean <B>setFirst</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> param)</PRE>
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362 <A NAME="setParam(java.lang.String)"><!-- --></A><H3>
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365 public boolean <B>setParam</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> param)</PRE>
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373 <A NAME="setLast(java.lang.String)"><!-- --></A><H3>
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376 public boolean <B>setLast</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> paramName)</PRE>
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384 <A NAME="setLast(java.lang.String, java.lang.String)"><!-- --></A><H3>
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387 public boolean <B>setLast</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> paramName,
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388 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> paramValue)</PRE>
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396 <A NAME="getParamValue(java.lang.String)"><!-- --></A><H3>
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399 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getParamValue</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> paramName)</PRE>
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407 <A NAME="removeParam(java.lang.String)"><!-- --></A><H3>
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410 public boolean <B>removeParam</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> paramName)</PRE>
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418 <A NAME="setParam(java.lang.String, java.lang.String)"><!-- --></A><H3>
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421 public boolean <B>setParam</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> paramName,
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422 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> paramValue)</PRE>
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430 <A NAME="getCommands()"><!-- --></A><H3>
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433 public <A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A><<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>> <B>getCommands</B>()</PRE>
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441 <A NAME="getCommandString()"><!-- --></A><H3>
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442 getCommandString</H3>
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444 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getCommandString</B>()</PRE>
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452 <A NAME="newCommandBuilder(java.util.List, java.lang.String)"><!-- --></A><H3>
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453 newCommandBuilder</H3>
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455 public static <T> <A HREF="../../../compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client">CommandBuilder</A><T> <B>newCommandBuilder</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A><? extends <A HREF="../../../compbio/metadata/Option.html" title="class in compbio.metadata">Option</A><T>> arguments,
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456 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> nameValueSeparator)</PRE>
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458 <DD>This produces the same result as getCommands method. The only difference
459 is that it accepts a List of Options as an input
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462 <DT><B>Parameters:</B><DD><CODE>arguments</CODE> -
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463 <DT><B>Returns:</B><DD>the instance of the CommandBuilder</DL>
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468 <A NAME="size()"><!-- --></A><H3>
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471 public int <B>size</B>()</PRE>
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479 <A NAME="hashCode()"><!-- --></A><H3>
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482 public int <B>hashCode</B>()</PRE>
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485 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>
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493 <A NAME="equals(java.lang.Object)"><!-- --></A><H3>
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496 public boolean <B>equals</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A> obj)</PRE>
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499 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>
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507 <A NAME="toString()"><!-- --></A><H3>
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510 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>toString</B>()</PRE>
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513 <DT><B>Overrides:</B><DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A></CODE> in class <CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></CODE></DL>
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