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7 Uses of Class compbio.engine.client.Executable.ExecProvider
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18 parent.document.title="Uses of Class compbio.engine.client.Executable.ExecProvider";
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42 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client"><FONT CLASS="NavBarFont1"><B>Class</B></FONT></A> </TD>
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84 <B>Uses of Class<br>compbio.engine.client.Executable.ExecProvider</B></H2>
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87 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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88 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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89 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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90 Packages that use <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></FONT></TH>
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92 <TR BGCOLOR="white" CLASS="TableRowColor">
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93 <TD><A HREF="#compbio.engine"><B>compbio.engine</B></A></TD>
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94 <TD> </TD>
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96 <TR BGCOLOR="white" CLASS="TableRowColor">
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97 <TD><A HREF="#compbio.engine.client"><B>compbio.engine.client</B></A></TD>
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98 <TD>Classes and interfaces representing an input for engines. </TD>
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100 <TR BGCOLOR="white" CLASS="TableRowColor">
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101 <TD><A HREF="#compbio.runner"><B>compbio.runner</B></A></TD>
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102 <TD>Utilities commonly used by all runners. </TD>
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104 <TR BGCOLOR="white" CLASS="TableRowColor">
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105 <TD><A HREF="#compbio.runner._impl"><B>compbio.runner._impl</B></A></TD>
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106 <TD> </TD>
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108 <TR BGCOLOR="white" CLASS="TableRowColor">
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109 <TD><A HREF="#compbio.runner.msa"><B>compbio.runner.msa</B></A></TD>
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110 <TD>Wrappers for native executables for multiple sequence alignment (msa) </TD>
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115 <A NAME="compbio.engine"><!-- --></A>
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116 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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117 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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118 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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119 Uses of <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> in <A HREF="../../../../compbio/engine/package-summary.html">compbio.engine</A></FONT></TH>
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125 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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126 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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127 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../../compbio/engine/package-summary.html">compbio.engine</A> that return <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></FONT></TH>
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129 <TR BGCOLOR="white" CLASS="TableRowColor">
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130 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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131 <CODE>static <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></CODE></FONT></TD>
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132 <TD><CODE><B>LoadBalancer.</B><B><A HREF="../../../../compbio/engine/LoadBalancer.html#getEngine(compbio.engine.client.Executable)">getEngine</A></B>(<A HREF="../../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A><?> executable)</CODE>
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135 </TD>
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137 <TR BGCOLOR="white" CLASS="TableRowColor">
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138 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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140 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">
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141 <TR ALIGN="right" VALIGN="">
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142 <TD NOWRAP><FONT SIZE="-1">
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143 <CODE><T,V> <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></CODE></FONT></TD>
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146 </CODE></FONT></TD>
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147 <TD><CODE><B>LoadBalancer.</B><B><A HREF="../../../../compbio/engine/LoadBalancer.html#getEngine(compbio.engine.client.Executable, java.util.List)">getEngine</A></B>(<A HREF="../../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A><V> executable,
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148 java.util.List<<A HREF="../../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>> dataSet)</CODE>
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151 </TD>
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157 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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158 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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159 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../../compbio/engine/package-summary.html">compbio.engine</A> with parameters of type <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></FONT></TH>
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161 <TR BGCOLOR="white" CLASS="TableRowColor">
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162 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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164 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">
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165 <TR ALIGN="right" VALIGN="">
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166 <TD NOWRAP><FONT SIZE="-1">
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167 <CODE><T> <A HREF="../../../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><T></CODE></FONT></TD>
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170 </CODE></FONT></TD>
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171 <TD><CODE><B>Configurator.</B><B><A HREF="../../../../compbio/engine/Configurator.html#configureExecutable(compbio.engine.client.Executable, compbio.engine.client.Executable.ExecProvider)">configureExecutable</A></B>(<A HREF="../../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A><T> executable,
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172 <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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175 </TD>
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177 <TR BGCOLOR="white" CLASS="TableRowColor">
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178 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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179 <CODE>static <A HREF="../../../../compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</A></CODE></FONT></TD>
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180 <TD><CODE><B>Configurator.</B><B><A HREF="../../../../compbio/engine/Configurator.html#getAsyncEngine(compbio.engine.client.ConfiguredExecutable, compbio.engine.client.Executable.ExecProvider)">getAsyncEngine</A></B>(<A HREF="../../../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><?> executable,
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181 <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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184 </TD>
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186 <TR BGCOLOR="white" CLASS="TableRowColor">
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187 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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188 <CODE>static <A HREF="../../../../compbio/engine/SyncExecutor.html" title="interface in compbio.engine">SyncExecutor</A></CODE></FONT></TD>
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189 <TD><CODE><B>Configurator.</B><B><A HREF="../../../../compbio/engine/Configurator.html#getSyncEngine(compbio.engine.client.ConfiguredExecutable, compbio.engine.client.Executable.ExecProvider)">getSyncEngine</A></B>(<A HREF="../../../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><?> executable,
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190 <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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193 </TD>
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198 <A NAME="compbio.engine.client"><!-- --></A>
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199 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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200 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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201 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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202 Uses of <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> in <A HREF="../../../../compbio/engine/client/package-summary.html">compbio.engine.client</A></FONT></TH>
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208 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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209 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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210 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> that return <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></FONT></TH>
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212 <TR BGCOLOR="white" CLASS="TableRowColor">
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213 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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214 <CODE> <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></CODE></FONT></TD>
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215 <TD><CODE><B>ConfiguredExecutable.</B><B><A HREF="../../../../compbio/engine/client/ConfiguredExecutable.html#getExecProvider()">getExecProvider</A></B>()</CODE>
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218 </TD>
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220 <TR BGCOLOR="white" CLASS="TableRowColor">
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221 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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222 <CODE> <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></CODE></FONT></TD>
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223 <TD><CODE><B>ConfExecutable.</B><B><A HREF="../../../../compbio/engine/client/ConfExecutable.html#getExecProvider()">getExecProvider</A></B>()</CODE>
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226 </TD>
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228 <TR BGCOLOR="white" CLASS="TableRowColor">
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229 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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230 <CODE> <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></CODE></FONT></TD>
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231 <TD><CODE><B>ConfiguredExecutable.</B><B><A HREF="../../../../compbio/engine/client/ConfiguredExecutable.html#getSupportedRuntimes()">getSupportedRuntimes</A></B>()</CODE>
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234 </TD>
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236 <TR BGCOLOR="white" CLASS="TableRowColor">
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237 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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238 <CODE> <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></CODE></FONT></TD>
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239 <TD><CODE><B>ConfExecutable.</B><B><A HREF="../../../../compbio/engine/client/ConfExecutable.html#getSupportedRuntimes()">getSupportedRuntimes</A></B>()</CODE>
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242 </TD>
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244 <TR BGCOLOR="white" CLASS="TableRowColor">
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245 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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246 <CODE>static <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></CODE></FONT></TD>
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247 <TD><CODE><B>Util.</B><B><A HREF="../../../../compbio/engine/client/Util.html#getSupportedRuntimes(java.lang.Class)">getSupportedRuntimes</A></B>(java.lang.Class<?> clazz)</CODE>
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250 </TD>
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252 <TR BGCOLOR="white" CLASS="TableRowColor">
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253 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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254 <CODE>static <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></CODE></FONT></TD>
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255 <TD><CODE><B>Executable.ExecProvider.</B><B><A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html#valueOf(java.lang.String)">valueOf</A></B>(java.lang.String name)</CODE>
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258 Returns the enum constant of this type with the specified name.</TD>
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260 <TR BGCOLOR="white" CLASS="TableRowColor">
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261 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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262 <CODE>static <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A>[]</CODE></FONT></TD>
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263 <TD><CODE><B>Executable.ExecProvider.</B><B><A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html#values()">values</A></B>()</CODE>
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266 Returns an array containing the constants of this enum type, in
267 the order they are declared.</TD>
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273 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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274 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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275 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> with parameters of type <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></FONT></TH>
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277 <TR BGCOLOR="white" CLASS="TableRowColor">
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278 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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279 <CODE> java.lang.String</CODE></FONT></TD>
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280 <TD><CODE><B>ConfiguredExecutable.</B><B><A HREF="../../../../compbio/engine/client/ConfiguredExecutable.html#getCommand(compbio.engine.client.Executable.ExecProvider)">getCommand</A></B>(<A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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283 </TD>
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285 <TR BGCOLOR="white" CLASS="TableRowColor">
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286 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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287 <CODE> java.lang.String</CODE></FONT></TD>
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288 <TD><CODE><B>ConfExecutable.</B><B><A HREF="../../../../compbio/engine/client/ConfExecutable.html#getCommand(compbio.engine.client.Executable.ExecProvider)">getCommand</A></B>(<A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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291 </TD>
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293 <TR BGCOLOR="white" CLASS="TableRowColor">
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294 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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295 <CODE>static java.lang.String</CODE></FONT></TD>
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296 <TD><CODE><B>Util.</B><B><A HREF="../../../../compbio/engine/client/Util.html#getCommand(compbio.engine.client.Executable.ExecProvider, java.lang.Class)">getCommand</A></B>(<A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider,
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297 java.lang.Class<?> clazz)</CODE>
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300 </TD>
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302 <TR BGCOLOR="white" CLASS="TableRowColor">
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303 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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304 <CODE> <A HREF="../../../../compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client">CommandBuilder</A><<A HREF="../../../../compbio/engine/client/SkeletalExecutable.html" title="type parameter in SkeletalExecutable">T</A>></CODE></FONT></TD>
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305 <TD><CODE><B>SkeletalExecutable.</B><B><A HREF="../../../../compbio/engine/client/SkeletalExecutable.html#getParameters(compbio.engine.client.Executable.ExecProvider)">getParameters</A></B>(<A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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308 </TD>
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310 <TR BGCOLOR="white" CLASS="TableRowColor">
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311 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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312 <CODE> <A HREF="../../../../compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client">CommandBuilder</A><<A HREF="../../../../compbio/engine/client/Executable.html" title="type parameter in Executable">T</A>></CODE></FONT></TD>
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313 <TD><CODE><B>Executable.</B><B><A HREF="../../../../compbio/engine/client/Executable.html#getParameters(compbio.engine.client.Executable.ExecProvider)">getParameters</A></B>(<A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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316 </TD>
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318 <TR BGCOLOR="white" CLASS="TableRowColor">
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319 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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320 <CODE> <A HREF="../../../../compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client">CommandBuilder</A><<A HREF="../../../../compbio/engine/client/ConfExecutable.html" title="type parameter in ConfExecutable">T</A>></CODE></FONT></TD>
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321 <TD><CODE><B>ConfExecutable.</B><B><A HREF="../../../../compbio/engine/client/ConfExecutable.html#getParameters(compbio.engine.client.Executable.ExecProvider)">getParameters</A></B>(<A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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324 </TD>
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326 <TR BGCOLOR="white" CLASS="TableRowColor">
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327 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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328 <CODE> void</CODE></FONT></TD>
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329 <TD><CODE><B>ConfExecutable.</B><B><A HREF="../../../../compbio/engine/client/ConfExecutable.html#setExecProvider(compbio.engine.client.Executable.ExecProvider)">setExecProvider</A></B>(<A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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332 </TD>
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337 <A NAME="compbio.runner"><!-- --></A>
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338 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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339 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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340 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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341 Uses of <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> in <A HREF="../../../../compbio/runner/package-summary.html">compbio.runner</A></FONT></TH>
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347 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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348 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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349 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../../compbio/runner/package-summary.html">compbio.runner</A> with parameters of type <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></FONT></TH>
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351 <TR BGCOLOR="white" CLASS="TableRowColor">
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352 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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353 <CODE> <A HREF="../../../../compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client">CommandBuilder</A><<A HREF="../../../../compbio/runner/_SkeletalCommandBuilder.html" title="class in compbio.runner">_SkeletalCommandBuilder</A>></CODE></FONT></TD>
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354 <TD><CODE><B>_SkeletalCommandBuilder.</B><B><A HREF="../../../../compbio/runner/_SkeletalCommandBuilder.html#getParameters(compbio.engine.client.Executable.ExecProvider)">getParameters</A></B>(<A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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357 </TD>
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362 <A NAME="compbio.runner._impl"><!-- --></A>
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363 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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364 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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365 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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366 Uses of <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> in <A HREF="../../../../compbio/runner/_impl/package-summary.html">compbio.runner._impl</A></FONT></TH>
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372 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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373 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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374 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../../compbio/runner/_impl/package-summary.html">compbio.runner._impl</A> with parameters of type <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></FONT></TH>
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376 <TR BGCOLOR="white" CLASS="TableRowColor">
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377 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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378 <CODE> java.lang.String</CODE></FONT></TD>
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379 <TD><CODE><B>Mcl.</B><B><A HREF="../../../../compbio/runner/_impl/Mcl.html#getCommand(compbio.engine.client.Executable.ExecProvider)">getCommand</A></B>(<A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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382 </TD>
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384 <TR BGCOLOR="white" CLASS="TableRowColor">
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385 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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386 <CODE> java.lang.String</CODE></FONT></TD>
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387 <TD><CODE><B>BlastAll.</B><B><A HREF="../../../../compbio/runner/_impl/BlastAll.html#getCommand(compbio.engine.client.Executable.ExecProvider)">getCommand</A></B>(<A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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390 </TD>
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392 <TR BGCOLOR="white" CLASS="TableRowColor">
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393 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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394 <CODE> java.lang.String</CODE></FONT></TD>
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395 <TD><CODE><B>RPSBlast.</B><B><A HREF="../../../../compbio/runner/_impl/RPSBlast.html#getCommand(compbio.engine.client.Executable.ExecProvider)">getCommand</A></B>(<A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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398 </TD>
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400 <TR BGCOLOR="white" CLASS="TableRowColor">
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401 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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402 <CODE> java.lang.String</CODE></FONT></TD>
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403 <TD><CODE><B>Ronn.</B><B><A HREF="../../../../compbio/runner/_impl/Ronn.html#getCommand(compbio.engine.client.Executable.ExecProvider)">getCommand</A></B>(<A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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406 </TD>
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408 <TR BGCOLOR="white" CLASS="TableRowColor">
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409 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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410 <CODE> java.lang.String</CODE></FONT></TD>
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411 <TD><CODE><B>PSIBlast.</B><B><A HREF="../../../../compbio/runner/_impl/PSIBlast.html#getCommand(compbio.engine.client.Executable.ExecProvider)">getCommand</A></B>(<A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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414 </TD>
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416 <TR BGCOLOR="white" CLASS="TableRowColor">
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417 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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418 <CODE> java.lang.String</CODE></FONT></TD>
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419 <TD><CODE><B>Disembl.</B><B><A HREF="../../../../compbio/runner/_impl/Disembl.html#getCommand(compbio.engine.client.Executable.ExecProvider)">getCommand</A></B>(<A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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422 </TD>
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424 <TR BGCOLOR="white" CLASS="TableRowColor">
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425 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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426 <CODE> <A HREF="../../../../compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client">CommandBuilder</A><<A HREF="../../../../compbio/runner/_impl/NetNglyc.html" title="class in compbio.runner._impl">NetNglyc</A>></CODE></FONT></TD>
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427 <TD><CODE><B>NetNglyc.</B><B><A HREF="../../../../compbio/runner/_impl/NetNglyc.html#getParameters(compbio.engine.client.Executable.ExecProvider)">getParameters</A></B>(<A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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430 </TD>
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435 <A NAME="compbio.runner.msa"><!-- --></A>
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436 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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437 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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438 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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439 Uses of <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> in <A HREF="../../../../compbio/runner/msa/package-summary.html">compbio.runner.msa</A></FONT></TH>
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445 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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446 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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447 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../../compbio/runner/msa/package-summary.html">compbio.runner.msa</A> with parameters of type <A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></FONT></TH>
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449 <TR BGCOLOR="white" CLASS="TableRowColor">
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450 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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451 <CODE> <A HREF="../../../../compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client">CommandBuilder</A><<A HREF="../../../../compbio/runner/msa/Tcoffee.html" title="class in compbio.runner.msa">Tcoffee</A>></CODE></FONT></TD>
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452 <TD><CODE><B>Tcoffee.</B><B><A HREF="../../../../compbio/runner/msa/Tcoffee.html#getParameters(compbio.engine.client.Executable.ExecProvider)">getParameters</A></B>(<A HREF="../../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A> provider)</CODE>
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455 </TD>
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