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7 compbio.engine.client
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83 Package compbio.engine.client
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85 Classes and interfaces representing an input for engines.
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89 <A HREF="#package_description"><B>Description</B></A>
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92 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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94 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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95 <B>Interface Summary</B></FONT></TH>
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97 <TR BGCOLOR="white" CLASS="TableRowColor">
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98 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/ClusterNativeSpecExecutable.html" title="interface in compbio.engine.client">ClusterNativeSpecExecutable<T></A></B></TD>
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101 <TR BGCOLOR="white" CLASS="TableRowColor">
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102 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable<T></A></B></TD>
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105 <TR BGCOLOR="white" CLASS="TableRowColor">
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106 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable<T></A></B></TD>
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107 <TD>Interface to a native executable.</TD>
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109 <TR BGCOLOR="white" CLASS="TableRowColor">
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110 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/PipedExecutable.html" title="interface in compbio.engine.client">PipedExecutable<T></A></B></TD>
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111 <TD>This is a marker interface to indicate that the output of the process must be
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121 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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122 <B>Class Summary</B></FONT></TH>
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124 <TR BGCOLOR="white" CLASS="TableRowColor">
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125 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client">CommandBuilder<T></A></B></TD>
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128 <TR BGCOLOR="white" CLASS="TableRowColor">
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129 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/ConfExecutable.html" title="class in compbio.engine.client">ConfExecutable<T></A></B></TD>
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132 <TR BGCOLOR="white" CLASS="TableRowColor">
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133 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/EnvVariableProcessor.html" title="class in compbio.engine.client">EnvVariableProcessor</A></B></TD>
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136 <TR BGCOLOR="white" CLASS="TableRowColor">
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137 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/PathValidator.html" title="class in compbio.engine.client">PathValidator</A></B></TD>
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140 <TR BGCOLOR="white" CLASS="TableRowColor">
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141 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/RunConfiguration.html" title="class in compbio.engine.client">RunConfiguration</A></B></TD>
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142 <TD>Value class for persisting ConfExecutable instances</TD>
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144 <TR BGCOLOR="white" CLASS="TableRowColor">
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145 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/SkeletalExecutable.html" title="class in compbio.engine.client">SkeletalExecutable<T></A></B></TD>
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148 <TR BGCOLOR="white" CLASS="TableRowColor">
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149 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/Util.html" title="class in compbio.engine.client">Util</A></B></TD>
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159 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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160 <B>Enum Summary</B></FONT></TH>
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162 <TR BGCOLOR="white" CLASS="TableRowColor">
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163 <TD WIDTH="15%"><B><A HREF="../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></B></TD>
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170 <A NAME="package_description"><!-- --></A><H2>
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171 Package compbio.engine.client Description
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175 Classes and interfaces representing an input for engines. These classes are known to runners,
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176 which form the next layer of the JABAWS hierarchy.
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181 <DT><B>Author:</B></DT>
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184 Date January 2010</DD>
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