1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
\r
5 <!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:30:43 GMT 2011 -->
\r
7 Uses of Package compbio.engine.client
\r
10 <META NAME="date" CONTENT="2011-12-07">
\r
12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">
\r
14 <SCRIPT type="text/javascript">
\r
15 function windowTitle()
\r
17 if (location.href.indexOf('is-external=true') == -1) {
\r
18 parent.document.title="Uses of Package compbio.engine.client";
\r
27 <BODY BGCOLOR="white" onload="windowTitle();">
\r
31 <!-- ========= START OF TOP NAVBAR ======= -->
\r
32 <A NAME="navbar_top"><!-- --></A>
\r
33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>
\r
34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">
\r
36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">
\r
37 <A NAME="navbar_top_firstrow"><!-- --></A>
\r
38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">
\r
39 <TR ALIGN="center" VALIGN="top">
\r
40 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A> </TD>
\r
41 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A> </TD>
\r
42 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Class</FONT> </TD>
\r
43 <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> <FONT CLASS="NavBarFont1Rev"><B>Use</B></FONT> </TD>
\r
44 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A> </TD>
\r
45 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A> </TD>
\r
46 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A> </TD>
\r
47 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A> </TD>
\r
51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
\r
57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
\r
59 NEXT</FONT></TD>
\r
60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
\r
61 <A HREF="../../../index.html?compbio/engine/client/package-use.html" target="_top"><B>FRAMES</B></A>
\r
62 <A HREF="package-use.html" target="_top"><B>NO FRAMES</B></A>
\r
63 <SCRIPT type="text/javascript">
\r
66 document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');
\r
71 <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>
\r
78 <A NAME="skip-navbar_top"></A>
\r
79 <!-- ========= END OF TOP NAVBAR ========= -->
\r
84 <B>Uses of Package<br>compbio.engine.client</B></H2>
\r
87 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
88 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
89 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
90 Packages that use <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A></FONT></TH>
\r
92 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
93 <TD><A HREF="#compbio.engine"><B>compbio.engine</B></A></TD>
\r
94 <TD> </TD>
\r
96 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
97 <TD><A HREF="#compbio.engine.client"><B>compbio.engine.client</B></A></TD>
\r
98 <TD> </TD>
\r
100 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
101 <TD><A HREF="#compbio.engine.cluster.drmaa"><B>compbio.engine.cluster.drmaa</B></A></TD>
\r
102 <TD> </TD>
\r
104 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
105 <TD><A HREF="#compbio.engine.conf"><B>compbio.engine.conf</B></A></TD>
\r
106 <TD> </TD>
\r
108 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
109 <TD><A HREF="#compbio.engine.local"><B>compbio.engine.local</B></A></TD>
\r
110 <TD> </TD>
\r
112 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
113 <TD><A HREF="#compbio.runner"><B>compbio.runner</B></A></TD>
\r
114 <TD>Utilities commonly used by all runners. </TD>
\r
116 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
117 <TD><A HREF="#compbio.runner._impl"><B>compbio.runner._impl</B></A></TD>
\r
118 <TD> </TD>
\r
120 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
121 <TD><A HREF="#compbio.runner.conservation"><B>compbio.runner.conservation</B></A></TD>
\r
122 <TD> </TD>
\r
124 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
125 <TD><A HREF="#compbio.runner.disorder"><B>compbio.runner.disorder</B></A></TD>
\r
126 <TD> </TD>
\r
128 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
129 <TD><A HREF="#compbio.runner.msa"><B>compbio.runner.msa</B></A></TD>
\r
130 <TD>Wrappers for native executables for multiple sequence alignment (msa) </TD>
\r
132 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
133 <TD><A HREF="#compbio.ws.client"><B>compbio.ws.client</B></A></TD>
\r
134 <TD>A command line client and web services testing client for
135 JAva Bioinformatics Analysis Web Services. </TD>
\r
137 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
138 <TD><A HREF="#compbio.ws.server"><B>compbio.ws.server</B></A></TD>
\r
139 <TD> </TD>
\r
144 <A NAME="compbio.engine"><!-- --></A>
\r
145 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
146 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
147 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
148 Classes in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> used by <A HREF="../../../compbio/engine/package-summary.html">compbio.engine</A></FONT></TH>
\r
150 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
151 <TD><B><A HREF="../../../compbio/engine/client/class-use/ConfiguredExecutable.html#compbio.engine"><B>ConfiguredExecutable</B></A></B>
\r
154 </TD>
\r
156 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
157 <TD><B><A HREF="../../../compbio/engine/client/class-use/Executable.html#compbio.engine"><B>Executable</B></A></B>
\r
160 Interface to a native executable.</TD>
\r
162 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
163 <TD><B><A HREF="../../../compbio/engine/client/class-use/Executable.ExecProvider.html#compbio.engine"><B>Executable.ExecProvider</B></A></B>
\r
166 </TD>
\r
171 <A NAME="compbio.engine.client"><!-- --></A>
\r
172 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
173 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
174 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
175 Classes in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> used by <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A></FONT></TH>
\r
177 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
178 <TD><B><A HREF="../../../compbio/engine/client/class-use/CommandBuilder.html#compbio.engine.client"><B>CommandBuilder</B></A></B>
\r
181 </TD>
\r
183 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
184 <TD><B><A HREF="../../../compbio/engine/client/class-use/ConfExecutable.html#compbio.engine.client"><B>ConfExecutable</B></A></B>
\r
187 </TD>
\r
189 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
190 <TD><B><A HREF="../../../compbio/engine/client/class-use/ConfiguredExecutable.html#compbio.engine.client"><B>ConfiguredExecutable</B></A></B>
\r
193 </TD>
\r
195 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
196 <TD><B><A HREF="../../../compbio/engine/client/class-use/Executable.html#compbio.engine.client"><B>Executable</B></A></B>
\r
199 Interface to a native executable.</TD>
\r
201 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
202 <TD><B><A HREF="../../../compbio/engine/client/class-use/Executable.ExecProvider.html#compbio.engine.client"><B>Executable.ExecProvider</B></A></B>
\r
205 </TD>
\r
207 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
208 <TD><B><A HREF="../../../compbio/engine/client/class-use/PipedExecutable.html#compbio.engine.client"><B>PipedExecutable</B></A></B>
\r
211 This is a marker interface to indicate that the output of the process must be
214 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
215 <TD><B><A HREF="../../../compbio/engine/client/class-use/RunConfiguration.html#compbio.engine.client"><B>RunConfiguration</B></A></B>
\r
218 Value class for persisting ConfExecutable instances</TD>
\r
220 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
221 <TD><B><A HREF="../../../compbio/engine/client/class-use/SkeletalExecutable.html#compbio.engine.client"><B>SkeletalExecutable</B></A></B>
\r
224 </TD>
\r
229 <A NAME="compbio.engine.cluster.drmaa"><!-- --></A>
\r
230 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
231 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
232 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
233 Classes in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> used by <A HREF="../../../compbio/engine/cluster/drmaa/package-summary.html">compbio.engine.cluster.drmaa</A></FONT></TH>
\r
235 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
236 <TD><B><A HREF="../../../compbio/engine/client/class-use/ConfiguredExecutable.html#compbio.engine.cluster.drmaa"><B>ConfiguredExecutable</B></A></B>
\r
239 </TD>
\r
244 <A NAME="compbio.engine.conf"><!-- --></A>
\r
245 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
246 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
247 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
248 Classes in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> used by <A HREF="../../../compbio/engine/conf/package-summary.html">compbio.engine.conf</A></FONT></TH>
\r
250 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
251 <TD><B><A HREF="../../../compbio/engine/client/class-use/Executable.html#compbio.engine.conf"><B>Executable</B></A></B>
\r
254 Interface to a native executable.</TD>
\r
259 <A NAME="compbio.engine.local"><!-- --></A>
\r
260 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
261 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
262 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
263 Classes in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> used by <A HREF="../../../compbio/engine/local/package-summary.html">compbio.engine.local</A></FONT></TH>
\r
265 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
266 <TD><B><A HREF="../../../compbio/engine/client/class-use/ConfiguredExecutable.html#compbio.engine.local"><B>ConfiguredExecutable</B></A></B>
\r
269 </TD>
\r
274 <A NAME="compbio.runner"><!-- --></A>
\r
275 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
276 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
277 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
278 Classes in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> used by <A HREF="../../../compbio/runner/package-summary.html">compbio.runner</A></FONT></TH>
\r
280 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
281 <TD><B><A HREF="../../../compbio/engine/client/class-use/CommandBuilder.html#compbio.runner"><B>CommandBuilder</B></A></B>
\r
284 </TD>
\r
286 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
287 <TD><B><A HREF="../../../compbio/engine/client/class-use/ConfiguredExecutable.html#compbio.runner"><B>ConfiguredExecutable</B></A></B>
\r
290 </TD>
\r
292 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
293 <TD><B><A HREF="../../../compbio/engine/client/class-use/Executable.html#compbio.runner"><B>Executable</B></A></B>
\r
296 Interface to a native executable.</TD>
\r
298 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
299 <TD><B><A HREF="../../../compbio/engine/client/class-use/Executable.ExecProvider.html#compbio.runner"><B>Executable.ExecProvider</B></A></B>
\r
302 </TD>
\r
304 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
305 <TD><B><A HREF="../../../compbio/engine/client/class-use/RunConfiguration.html#compbio.runner"><B>RunConfiguration</B></A></B>
\r
308 Value class for persisting ConfExecutable instances</TD>
\r
313 <A NAME="compbio.runner._impl"><!-- --></A>
\r
314 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
315 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
316 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
317 Classes in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> used by <A HREF="../../../compbio/runner/_impl/package-summary.html">compbio.runner._impl</A></FONT></TH>
\r
319 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
320 <TD><B><A HREF="../../../compbio/engine/client/class-use/CommandBuilder.html#compbio.runner._impl"><B>CommandBuilder</B></A></B>
\r
323 </TD>
\r
325 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
326 <TD><B><A HREF="../../../compbio/engine/client/class-use/Executable.html#compbio.runner._impl"><B>Executable</B></A></B>
\r
329 Interface to a native executable.</TD>
\r
331 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
332 <TD><B><A HREF="../../../compbio/engine/client/class-use/Executable.ExecProvider.html#compbio.runner._impl"><B>Executable.ExecProvider</B></A></B>
\r
335 </TD>
\r
337 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
338 <TD><B><A HREF="../../../compbio/engine/client/class-use/RunConfiguration.html#compbio.runner._impl"><B>RunConfiguration</B></A></B>
\r
341 Value class for persisting ConfExecutable instances</TD>
\r
346 <A NAME="compbio.runner.conservation"><!-- --></A>
\r
347 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
348 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
349 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
350 Classes in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> used by <A HREF="../../../compbio/runner/conservation/package-summary.html">compbio.runner.conservation</A></FONT></TH>
\r
352 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
353 <TD><B><A HREF="../../../compbio/engine/client/class-use/CommandBuilder.html#compbio.runner.conservation"><B>CommandBuilder</B></A></B>
\r
356 </TD>
\r
358 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
359 <TD><B><A HREF="../../../compbio/engine/client/class-use/Executable.html#compbio.runner.conservation"><B>Executable</B></A></B>
\r
362 Interface to a native executable.</TD>
\r
364 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
365 <TD><B><A HREF="../../../compbio/engine/client/class-use/Executable.ExecProvider.html#compbio.runner.conservation"><B>Executable.ExecProvider</B></A></B>
\r
368 </TD>
\r
370 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
371 <TD><B><A HREF="../../../compbio/engine/client/class-use/SkeletalExecutable.html#compbio.runner.conservation"><B>SkeletalExecutable</B></A></B>
\r
374 </TD>
\r
379 <A NAME="compbio.runner.disorder"><!-- --></A>
\r
380 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
381 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
382 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
383 Classes in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> used by <A HREF="../../../compbio/runner/disorder/package-summary.html">compbio.runner.disorder</A></FONT></TH>
\r
385 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
386 <TD><B><A HREF="../../../compbio/engine/client/class-use/CommandBuilder.html#compbio.runner.disorder"><B>CommandBuilder</B></A></B>
\r
389 </TD>
\r
391 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
392 <TD><B><A HREF="../../../compbio/engine/client/class-use/Executable.html#compbio.runner.disorder"><B>Executable</B></A></B>
\r
395 Interface to a native executable.</TD>
\r
397 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
398 <TD><B><A HREF="../../../compbio/engine/client/class-use/Executable.ExecProvider.html#compbio.runner.disorder"><B>Executable.ExecProvider</B></A></B>
\r
401 </TD>
\r
403 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
404 <TD><B><A HREF="../../../compbio/engine/client/class-use/PipedExecutable.html#compbio.runner.disorder"><B>PipedExecutable</B></A></B>
\r
407 This is a marker interface to indicate that the output of the process must be
410 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
411 <TD><B><A HREF="../../../compbio/engine/client/class-use/SkeletalExecutable.html#compbio.runner.disorder"><B>SkeletalExecutable</B></A></B>
\r
414 </TD>
\r
419 <A NAME="compbio.runner.msa"><!-- --></A>
\r
420 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
421 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
422 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
423 Classes in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> used by <A HREF="../../../compbio/runner/msa/package-summary.html">compbio.runner.msa</A></FONT></TH>
\r
425 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
426 <TD><B><A HREF="../../../compbio/engine/client/class-use/CommandBuilder.html#compbio.runner.msa"><B>CommandBuilder</B></A></B>
\r
429 </TD>
\r
431 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
432 <TD><B><A HREF="../../../compbio/engine/client/class-use/Executable.html#compbio.runner.msa"><B>Executable</B></A></B>
\r
435 Interface to a native executable.</TD>
\r
437 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
438 <TD><B><A HREF="../../../compbio/engine/client/class-use/Executable.ExecProvider.html#compbio.runner.msa"><B>Executable.ExecProvider</B></A></B>
\r
441 </TD>
\r
443 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
444 <TD><B><A HREF="../../../compbio/engine/client/class-use/PipedExecutable.html#compbio.runner.msa"><B>PipedExecutable</B></A></B>
\r
447 This is a marker interface to indicate that the output of the process must be
450 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
451 <TD><B><A HREF="../../../compbio/engine/client/class-use/SkeletalExecutable.html#compbio.runner.msa"><B>SkeletalExecutable</B></A></B>
\r
454 </TD>
\r
459 <A NAME="compbio.ws.client"><!-- --></A>
\r
460 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
461 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
462 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
463 Classes in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> used by <A HREF="../../../compbio/ws/client/package-summary.html">compbio.ws.client</A></FONT></TH>
\r
465 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
466 <TD><B><A HREF="../../../compbio/engine/client/class-use/Executable.html#compbio.ws.client"><B>Executable</B></A></B>
\r
469 Interface to a native executable.</TD>
\r
474 <A NAME="compbio.ws.server"><!-- --></A>
\r
475 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
476 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
477 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
478 Classes in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> used by <A HREF="../../../compbio/ws/server/package-summary.html">compbio.ws.server</A></FONT></TH>
\r
480 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
481 <TD><B><A HREF="../../../compbio/engine/client/class-use/ConfiguredExecutable.html#compbio.ws.server"><B>ConfiguredExecutable</B></A></B>
\r
484 </TD>
\r
492 <!-- ======= START OF BOTTOM NAVBAR ====== -->
\r
493 <A NAME="navbar_bottom"><!-- --></A>
\r
494 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>
\r
495 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">
\r
497 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">
\r
498 <A NAME="navbar_bottom_firstrow"><!-- --></A>
\r
499 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">
\r
500 <TR ALIGN="center" VALIGN="top">
\r
501 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A> </TD>
\r
502 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A> </TD>
\r
503 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Class</FONT> </TD>
\r
504 <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> <FONT CLASS="NavBarFont1Rev"><B>Use</B></FONT> </TD>
\r
505 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A> </TD>
\r
506 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A> </TD>
\r
507 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A> </TD>
\r
508 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A> </TD>
\r
512 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
\r
518 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
\r
520 NEXT</FONT></TD>
\r
521 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
\r
522 <A HREF="../../../index.html?compbio/engine/client/package-use.html" target="_top"><B>FRAMES</B></A>
\r
523 <A HREF="package-use.html" target="_top"><B>NO FRAMES</B></A>
\r
524 <SCRIPT type="text/javascript">
\r
527 document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');
\r
532 <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>
\r
539 <A NAME="skip-navbar_bottom"></A>
\r
540 <!-- ======== END OF BOTTOM NAVBAR ======= -->
\r