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7 Uses of Class compbio.metadata.Parameter
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84 <B>Uses of Class<br>compbio.metadata.Parameter</B></H2>
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87 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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89 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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90 Packages that use <A HREF="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A></FONT></TH>
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92 <TR BGCOLOR="white" CLASS="TableRowColor">
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93 <TD><A HREF="#compbio.metadata"><B>compbio.metadata</B></A></TD>
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94 <TD>A meta-data model for multiple sequence alignment web services
95 Classes in this package have no dependencies to other sources in the project. </TD>
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97 <TR BGCOLOR="white" CLASS="TableRowColor">
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98 <TD><A HREF="#compbio.runner"><B>compbio.runner</B></A></TD>
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99 <TD>Utilities commonly used by all runners. </TD>
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104 <A NAME="compbio.metadata"><!-- --></A>
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105 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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106 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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107 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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108 Uses of <A HREF="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A> in <A HREF="../../../compbio/metadata/package-summary.html">compbio.metadata</A></FONT></TH>
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114 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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115 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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116 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/metadata/package-summary.html">compbio.metadata</A> that return types with arguments of type <A HREF="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A></FONT></TH>
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118 <TR BGCOLOR="white" CLASS="TableRowColor">
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119 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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120 <CODE> java.util.List<<A HREF="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A><<A HREF="../../../compbio/metadata/RunnerConfig.html" title="type parameter in RunnerConfig">T</A>>></CODE></FONT></TD>
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121 <TD><CODE><B>RunnerConfig.</B><B><A HREF="../../../compbio/metadata/RunnerConfig.html#getParameters()">getParameters</A></B>()</CODE>
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124 </TD>
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130 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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131 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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132 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/metadata/package-summary.html">compbio.metadata</A> with parameters of type <A HREF="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A></FONT></TH>
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134 <TR BGCOLOR="white" CLASS="TableRowColor">
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135 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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136 <CODE> void</CODE></FONT></TD>
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137 <TD><CODE><B>RunnerConfig.</B><B><A HREF="../../../compbio/metadata/RunnerConfig.html#addParameter(compbio.metadata.Parameter)">addParameter</A></B>(<A HREF="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A><<A HREF="../../../compbio/metadata/RunnerConfig.html" title="type parameter in RunnerConfig">T</A>> param)</CODE>
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140 </TD>
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146 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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147 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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148 <TH ALIGN="left" COLSPAN="2">Method parameters in <A HREF="../../../compbio/metadata/package-summary.html">compbio.metadata</A> with type arguments of type <A HREF="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A></FONT></TH>
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150 <TR BGCOLOR="white" CLASS="TableRowColor">
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151 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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152 <CODE> void</CODE></FONT></TD>
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153 <TD><CODE><B>RunnerConfig.</B><B><A HREF="../../../compbio/metadata/RunnerConfig.html#setParameters(java.util.List)">setParameters</A></B>(java.util.List<<A HREF="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A><<A HREF="../../../compbio/metadata/RunnerConfig.html" title="type parameter in RunnerConfig">T</A>>> parameters)</CODE>
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156 </TD>
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164 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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165 Uses of <A HREF="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A> in <A HREF="../../../compbio/runner/package-summary.html">compbio.runner</A></FONT></TH>
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171 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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172 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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173 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/runner/package-summary.html">compbio.runner</A> that return types with arguments of type <A HREF="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A></FONT></TH>
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175 <TR BGCOLOR="white" CLASS="TableRowColor">
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176 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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177 <CODE> java.util.Map<<A HREF="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A><?>,java.lang.String></CODE></FONT></TD>
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178 <TD><CODE><B>OptionCombinator.</B><B><A HREF="../../../compbio/runner/OptionCombinator.html#getAllConstrainedParametersWithBorderValues(boolean)">getAllConstrainedParametersWithBorderValues</A></B>(boolean minValue)</CODE>
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181 </TD>
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183 <TR BGCOLOR="white" CLASS="TableRowColor">
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184 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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185 <CODE> java.util.Map<<A HREF="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A><?>,java.lang.String></CODE></FONT></TD>
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186 <TD><CODE><B>OptionCombinator.</B><B><A HREF="../../../compbio/runner/OptionCombinator.html#getAllConstrainedParametersWithRandomValues()">getAllConstrainedParametersWithRandomValues</A></B>()</CODE>
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189 </TD>
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191 <TR BGCOLOR="white" CLASS="TableRowColor">
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192 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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193 <CODE> java.util.List<<A HREF="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A><?>></CODE></FONT></TD>
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194 <TD><CODE><B>OptionCombinator.</B><B><A HREF="../../../compbio/runner/OptionCombinator.html#getAllParameters()">getAllParameters</A></B>()</CODE>
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197 </TD>
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203 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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204 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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205 <TH ALIGN="left" COLSPAN="2">Method parameters in <A HREF="../../../compbio/runner/package-summary.html">compbio.runner</A> with type arguments of type <A HREF="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A></FONT></TH>
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207 <TR BGCOLOR="white" CLASS="TableRowColor">
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208 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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209 <CODE> java.util.List<java.lang.String></CODE></FONT></TD>
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210 <TD><CODE><B>OptionCombinator.</B><B><A HREF="../../../compbio/runner/OptionCombinator.html#parametersToCommandString(java.util.List, java.util.Map)">parametersToCommandString</A></B>(java.util.List<<A HREF="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A><?>> orderedList,
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211 java.util.Map<<A HREF="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A><?>,java.lang.String> prmValue)</CODE>
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214 </TD>
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216 <TR BGCOLOR="white" CLASS="TableRowColor">
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217 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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218 <CODE> java.util.List<java.lang.String></CODE></FONT></TD>
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219 <TD><CODE><B>OptionCombinator.</B><B><A HREF="../../../compbio/runner/OptionCombinator.html#parametersToCommandString(java.util.List, java.util.Map)">parametersToCommandString</A></B>(java.util.List<<A HREF="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A><?>> orderedList,
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220 java.util.Map<<A HREF="../../../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A><?>,java.lang.String> prmValue)</CODE>
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