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5 <!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:30:42 GMT 2011 -->
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7 Uses of Class compbio.metadata.ResultNotAvailableException
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18 parent.document.title="Uses of Class compbio.metadata.ResultNotAvailableException";
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84 <B>Uses of Class<br>compbio.metadata.ResultNotAvailableException</B></H2>
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87 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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88 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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89 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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90 Packages that use <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A></FONT></TH>
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92 <TR BGCOLOR="white" CLASS="TableRowColor">
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93 <TD><A HREF="#compbio.data.msa"><B>compbio.data.msa</B></A></TD>
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94 <TD>Web Service interfaces for JAva Bioinformatics Analysis Web Services. </TD>
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96 <TR BGCOLOR="white" CLASS="TableRowColor">
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97 <TD><A HREF="#compbio.engine"><B>compbio.engine</B></A></TD>
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98 <TD> </TD>
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100 <TR BGCOLOR="white" CLASS="TableRowColor">
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101 <TD><A HREF="#compbio.engine.client"><B>compbio.engine.client</B></A></TD>
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102 <TD> </TD>
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104 <TR BGCOLOR="white" CLASS="TableRowColor">
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105 <TD><A HREF="#compbio.engine.cluster.drmaa"><B>compbio.engine.cluster.drmaa</B></A></TD>
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106 <TD> </TD>
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108 <TR BGCOLOR="white" CLASS="TableRowColor">
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109 <TD><A HREF="#compbio.engine.local"><B>compbio.engine.local</B></A></TD>
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110 <TD> </TD>
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112 <TR BGCOLOR="white" CLASS="TableRowColor">
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113 <TD><A HREF="#compbio.runner.conservation"><B>compbio.runner.conservation</B></A></TD>
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114 <TD> </TD>
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116 <TR BGCOLOR="white" CLASS="TableRowColor">
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117 <TD><A HREF="#compbio.runner.disorder"><B>compbio.runner.disorder</B></A></TD>
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118 <TD> </TD>
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120 <TR BGCOLOR="white" CLASS="TableRowColor">
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121 <TD><A HREF="#compbio.runner.msa"><B>compbio.runner.msa</B></A></TD>
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122 <TD>Wrappers for native executables for multiple sequence alignment (msa) </TD>
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124 <TR BGCOLOR="white" CLASS="TableRowColor">
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125 <TD><A HREF="#compbio.ws.server"><B>compbio.ws.server</B></A></TD>
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126 <TD> </TD>
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131 <A NAME="compbio.data.msa"><!-- --></A>
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132 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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133 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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134 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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135 Uses of <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A> in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A></FONT></TH>
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141 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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142 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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143 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/data/msa/package-summary.html">compbio.data.msa</A> that throw <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A></FONT></TH>
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145 <TR BGCOLOR="white" CLASS="TableRowColor">
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146 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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147 <CODE> <A HREF="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A></CODE></FONT></TD>
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148 <TD><CODE><B>SequenceAnnotation.</B><B><A HREF="../../../compbio/data/msa/SequenceAnnotation.html#getAnnotation(java.lang.String)">getAnnotation</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> jobId)</CODE>
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151 Return the result of the job.</TD>
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153 <TR BGCOLOR="white" CLASS="TableRowColor">
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154 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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155 <CODE> <A HREF="../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A></CODE></FONT></TD>
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156 <TD><CODE><B>MsaWS.</B><B><A HREF="../../../compbio/data/msa/MsaWS.html#getResult(java.lang.String)">getResult</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> jobId)</CODE>
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159 Return the result of the job.</TD>
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164 <A NAME="compbio.engine"><!-- --></A>
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165 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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166 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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167 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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168 Uses of <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A> in <A HREF="../../../compbio/engine/package-summary.html">compbio.engine</A></FONT></TH>
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174 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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175 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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176 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/engine/package-summary.html">compbio.engine</A> that throw <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A></FONT></TH>
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178 <TR BGCOLOR="white" CLASS="TableRowColor">
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179 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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180 <CODE> <A HREF="../../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><?></CODE></FONT></TD>
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181 <TD><CODE><B>AsyncExecutor.</B><B><A HREF="../../../compbio/engine/AsyncExecutor.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> jobId)</CODE>
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184 Retrieve the results of the job.</TD>
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189 <A NAME="compbio.engine.client"><!-- --></A>
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190 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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191 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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192 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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193 Uses of <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A> in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A></FONT></TH>
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199 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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200 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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201 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/engine/client/package-summary.html">compbio.engine.client</A> that throw <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A></FONT></TH>
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203 <TR BGCOLOR="white" CLASS="TableRowColor">
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204 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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206 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">
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207 <TR ALIGN="right" VALIGN="">
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208 <TD NOWRAP><FONT SIZE="-1">
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209 <CODE><V> V</CODE></FONT></TD>
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212 </CODE></FONT></TD>
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213 <TD><CODE><B>ConfiguredExecutable.</B><B><A HREF="../../../compbio/engine/client/ConfiguredExecutable.html#getResults()">getResults</A></B>()</CODE>
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216 </TD>
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218 <TR BGCOLOR="white" CLASS="TableRowColor">
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219 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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221 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">
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222 <TR ALIGN="right" VALIGN="">
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223 <TD NOWRAP><FONT SIZE="-1">
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224 <CODE><V> V</CODE></FONT></TD>
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227 </CODE></FONT></TD>
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228 <TD><CODE><B>ConfExecutable.</B><B><A HREF="../../../compbio/engine/client/ConfExecutable.html#getResults()">getResults</A></B>()</CODE>
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231 </TD>
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233 <TR BGCOLOR="white" CLASS="TableRowColor">
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234 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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236 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">
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237 <TR ALIGN="right" VALIGN="">
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238 <TD NOWRAP><FONT SIZE="-1">
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239 <CODE><V> V</CODE></FONT></TD>
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242 </CODE></FONT></TD>
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243 <TD><CODE><B>Executable.</B><B><A HREF="../../../compbio/engine/client/Executable.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> directory)</CODE>
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246 </TD>
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248 <TR BGCOLOR="white" CLASS="TableRowColor">
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249 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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251 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">
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252 <TR ALIGN="right" VALIGN="">
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253 <TD NOWRAP><FONT SIZE="-1">
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254 <CODE><V> V</CODE></FONT></TD>
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257 </CODE></FONT></TD>
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258 <TD><CODE><B>ConfExecutable.</B><B><A HREF="../../../compbio/engine/client/ConfExecutable.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> directory)</CODE>
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261 </TD>
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263 <TR BGCOLOR="white" CLASS="TableRowColor">
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264 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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265 <CODE>static <A HREF="../../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><?></CODE></FONT></TD>
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266 <TD><CODE><B>Util.</B><B><A HREF="../../../compbio/engine/client/Util.html#loadExecutable(java.lang.String)">loadExecutable</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> taskId)</CODE>
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269 </TD>
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274 <A NAME="compbio.engine.cluster.drmaa"><!-- --></A>
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275 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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276 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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277 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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278 Uses of <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A> in <A HREF="../../../compbio/engine/cluster/drmaa/package-summary.html">compbio.engine.cluster.drmaa</A></FONT></TH>
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284 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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285 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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286 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/engine/cluster/drmaa/package-summary.html">compbio.engine.cluster.drmaa</A> that throw <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A></FONT></TH>
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288 <TR BGCOLOR="white" CLASS="TableRowColor">
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289 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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290 <CODE> <A HREF="../../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><?></CODE></FONT></TD>
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291 <TD><CODE><B>ClusterSession.</B><B><A HREF="../../../compbio/engine/cluster/drmaa/ClusterSession.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> taskId)</CODE>
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294 </TD>
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296 <TR BGCOLOR="white" CLASS="TableRowColor">
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297 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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298 <CODE> <A HREF="../../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><?></CODE></FONT></TD>
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299 <TD><CODE><B>AsyncJobRunner.</B><B><A HREF="../../../compbio/engine/cluster/drmaa/AsyncJobRunner.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> jobId)</CODE>
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302 </TD>
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307 <A NAME="compbio.engine.local"><!-- --></A>
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308 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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309 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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310 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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311 Uses of <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A> in <A HREF="../../../compbio/engine/local/package-summary.html">compbio.engine.local</A></FONT></TH>
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317 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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318 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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319 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/engine/local/package-summary.html">compbio.engine.local</A> that throw <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A></FONT></TH>
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321 <TR BGCOLOR="white" CLASS="TableRowColor">
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322 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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323 <CODE>static <A HREF="../../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><?></CODE></FONT></TD>
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324 <TD><CODE><B>LocalEngineUtil.</B><B><A HREF="../../../compbio/engine/local/LocalEngineUtil.html#getResults(java.util.concurrent.Future, java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/util/concurrent/Future.html?is-external=true" title="class or interface in java.util.concurrent">Future</A><<A HREF="../../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><?>> future,
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325 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> taskId)</CODE>
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328 </TD>
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330 <TR BGCOLOR="white" CLASS="TableRowColor">
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331 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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332 <CODE> <A HREF="../../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A><?></CODE></FONT></TD>
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333 <TD><CODE><B>AsyncLocalRunner.</B><B><A HREF="../../../compbio/engine/local/AsyncLocalRunner.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> taskId)</CODE>
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336 </TD>
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341 <A NAME="compbio.runner.conservation"><!-- --></A>
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342 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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343 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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344 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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345 Uses of <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A> in <A HREF="../../../compbio/runner/conservation/package-summary.html">compbio.runner.conservation</A></FONT></TH>
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351 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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352 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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353 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/runner/conservation/package-summary.html">compbio.runner.conservation</A> that throw <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A></FONT></TH>
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355 <TR BGCOLOR="white" CLASS="TableRowColor">
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356 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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357 <CODE> <A HREF="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A></CODE></FONT></TD>
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358 <TD><CODE><B>AACon.</B><B><A HREF="../../../compbio/runner/conservation/AACon.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> workDirectory)</CODE>
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361 </TD>
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366 <A NAME="compbio.runner.disorder"><!-- --></A>
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367 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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368 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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369 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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370 Uses of <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A> in <A HREF="../../../compbio/runner/disorder/package-summary.html">compbio.runner.disorder</A></FONT></TH>
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376 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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377 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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378 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/runner/disorder/package-summary.html">compbio.runner.disorder</A> that throw <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A></FONT></TH>
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380 <TR BGCOLOR="white" CLASS="TableRowColor">
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381 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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382 <CODE> <A HREF="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A></CODE></FONT></TD>
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383 <TD><CODE><B>Jronn.</B><B><A HREF="../../../compbio/runner/disorder/Jronn.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> workDirectory)</CODE>
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386 </TD>
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388 <TR BGCOLOR="white" CLASS="TableRowColor">
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389 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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390 <CODE> <A HREF="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A></CODE></FONT></TD>
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391 <TD><CODE><B>IUPred.</B><B><A HREF="../../../compbio/runner/disorder/IUPred.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> workDirectory)</CODE>
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394 </TD>
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396 <TR BGCOLOR="white" CLASS="TableRowColor">
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397 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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398 <CODE> <A HREF="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A></CODE></FONT></TD>
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399 <TD><CODE><B>GlobPlot.</B><B><A HREF="../../../compbio/runner/disorder/GlobPlot.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> workDirectory)</CODE>
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402 </TD>
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404 <TR BGCOLOR="white" CLASS="TableRowColor">
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405 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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406 <CODE> <A HREF="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A></CODE></FONT></TD>
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407 <TD><CODE><B>Disembl.</B><B><A HREF="../../../compbio/runner/disorder/Disembl.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> workDirectory)</CODE>
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410 </TD>
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415 <A NAME="compbio.runner.msa"><!-- --></A>
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416 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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417 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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418 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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419 Uses of <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A> in <A HREF="../../../compbio/runner/msa/package-summary.html">compbio.runner.msa</A></FONT></TH>
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425 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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426 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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427 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/runner/msa/package-summary.html">compbio.runner.msa</A> that throw <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A></FONT></TH>
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429 <TR BGCOLOR="white" CLASS="TableRowColor">
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430 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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431 <CODE> <A HREF="../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A></CODE></FONT></TD>
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432 <TD><CODE><B>Mafft.</B><B><A HREF="../../../compbio/runner/msa/Mafft.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> workDirectory)</CODE>
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435 </TD>
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437 <TR BGCOLOR="white" CLASS="TableRowColor">
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438 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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439 <CODE> <A HREF="../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A></CODE></FONT></TD>
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440 <TD><CODE><B>ClustalW.</B><B><A HREF="../../../compbio/runner/msa/ClustalW.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> workDirectory)</CODE>
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443 </TD>
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445 <TR BGCOLOR="white" CLASS="TableRowColor">
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446 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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447 <CODE> <A HREF="../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A></CODE></FONT></TD>
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448 <TD><CODE><B>Tcoffee.</B><B><A HREF="../../../compbio/runner/msa/Tcoffee.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> workDirectory)</CODE>
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451 </TD>
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453 <TR BGCOLOR="white" CLASS="TableRowColor">
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454 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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455 <CODE> <A HREF="../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A></CODE></FONT></TD>
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456 <TD><CODE><B>Muscle.</B><B><A HREF="../../../compbio/runner/msa/Muscle.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> workDirectory)</CODE>
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459 </TD>
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461 <TR BGCOLOR="white" CLASS="TableRowColor">
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462 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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463 <CODE> <A HREF="../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A></CODE></FONT></TD>
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464 <TD><CODE><B>ClustalO.</B><B><A HREF="../../../compbio/runner/msa/ClustalO.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> workDirectory)</CODE>
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467 </TD>
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469 <TR BGCOLOR="white" CLASS="TableRowColor">
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470 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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471 <CODE> <A HREF="../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A></CODE></FONT></TD>
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472 <TD><CODE><B>Probcons.</B><B><A HREF="../../../compbio/runner/msa/Probcons.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> workDirectory)</CODE>
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475 </TD>
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480 <A NAME="compbio.ws.server"><!-- --></A>
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481 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
482 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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483 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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484 Uses of <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A> in <A HREF="../../../compbio/ws/server/package-summary.html">compbio.ws.server</A></FONT></TH>
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490 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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491 <TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
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492 <TH ALIGN="left" COLSPAN="2">Methods in <A HREF="../../../compbio/ws/server/package-summary.html">compbio.ws.server</A> that throw <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A></FONT></TH>
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494 <TR BGCOLOR="white" CLASS="TableRowColor">
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495 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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496 <CODE> <A HREF="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A></CODE></FONT></TD>
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497 <TD><CODE><B>SequenceAnnotationService.</B><B><A HREF="../../../compbio/ws/server/SequenceAnnotationService.html#getAnnotation(java.lang.String)">getAnnotation</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> jobId)</CODE>
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500 </TD>
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502 <TR BGCOLOR="white" CLASS="TableRowColor">
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503 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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505 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">
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506 <TR ALIGN="right" VALIGN="">
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507 <TD NOWRAP><FONT SIZE="-1">
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508 <CODE><T> <A HREF="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A></CODE></FONT></TD>
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511 </CODE></FONT></TD>
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512 <TD><CODE><B>WSUtil.</B><B><A HREF="../../../compbio/ws/server/WSUtil.html#getAnnotation(java.lang.String, org.apache.log4j.Logger)">getAnnotation</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> jobId,
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513 org.apache.log4j.Logger log)</CODE>
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516 </TD>
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518 <TR BGCOLOR="white" CLASS="TableRowColor">
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519 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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520 <CODE> <A HREF="../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A></CODE></FONT></TD>
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521 <TD><CODE><B>ClustalWS.</B><B><A HREF="../../../compbio/ws/server/ClustalWS.html#getResult(java.lang.String)">getResult</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> jobId)</CODE>
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524 </TD>
\r
526 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
527 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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528 <CODE> <A HREF="../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A></CODE></FONT></TD>
\r
529 <TD><CODE><B>_MsaService.</B><B><A HREF="../../../compbio/ws/server/_MsaService.html#getResult(java.lang.String)">getResult</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> jobId)</CODE>
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532 </TD>
\r
534 <TR BGCOLOR="white" CLASS="TableRowColor">
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535 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
\r
536 <CODE> <A HREF="../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A></CODE></FONT></TD>
\r
537 <TD><CODE><B>MuscleWS.</B><B><A HREF="../../../compbio/ws/server/MuscleWS.html#getResult(java.lang.String)">getResult</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> jobId)</CODE>
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540 </TD>
\r
542 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
543 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
\r
544 <CODE> <A HREF="../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A></CODE></FONT></TD>
\r
545 <TD><CODE><B>MafftWS.</B><B><A HREF="../../../compbio/ws/server/MafftWS.html#getResult(java.lang.String)">getResult</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> jobId)</CODE>
\r
548 </TD>
\r
550 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
551 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
\r
552 <CODE> <A HREF="../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A></CODE></FONT></TD>
\r
553 <TD><CODE><B>TcoffeeWS.</B><B><A HREF="../../../compbio/ws/server/TcoffeeWS.html#getResult(java.lang.String)">getResult</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> jobId)</CODE>
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556 </TD>
\r
558 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
559 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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560 <CODE> <A HREF="../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A></CODE></FONT></TD>
\r
561 <TD><CODE><B>ProbconsWS.</B><B><A HREF="../../../compbio/ws/server/ProbconsWS.html#getResult(java.lang.String)">getResult</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> jobId)</CODE>
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564 </TD>
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566 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
567 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
\r
568 <CODE> <A HREF="../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A></CODE></FONT></TD>
\r
569 <TD><CODE><B>ClustalOWS.</B><B><A HREF="../../../compbio/ws/server/ClustalOWS.html#getResult(java.lang.String)">getResult</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> jobId)</CODE>
\r
572 </TD>
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580 <!-- ======= START OF BOTTOM NAVBAR ====== -->
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