1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
\r
5 <!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:36 BST 2011 -->
\r
7 compbio.pipeline._jpred Class Hierarchy
\r
10 <META NAME="date" CONTENT="2011-08-12">
\r
12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">
\r
14 <SCRIPT type="text/javascript">
\r
15 function windowTitle()
\r
17 if (location.href.indexOf('is-external=true') == -1) {
\r
18 parent.document.title="compbio.pipeline._jpred Class Hierarchy";
\r
27 <BODY BGCOLOR="white" onload="windowTitle();">
\r
31 <!-- ========= START OF TOP NAVBAR ======= -->
\r
32 <A NAME="navbar_top"><!-- --></A>
\r
33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>
\r
34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">
\r
36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">
\r
37 <A NAME="navbar_top_firstrow"><!-- --></A>
\r
38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">
\r
39 <TR ALIGN="center" VALIGN="top">
\r
40 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A> </TD>
\r
41 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A> </TD>
\r
42 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Class</FONT> </TD>
\r
43 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Use</FONT> </TD>
\r
44 <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> <FONT CLASS="NavBarFont1Rev"><B>Tree</B></FONT> </TD>
\r
45 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A> </TD>
\r
46 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A> </TD>
\r
47 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A> </TD>
\r
51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
\r
57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
\r
58 <A HREF="../../../compbio/metadata/package-tree.html"><B>PREV</B></A>
\r
59 <A HREF="../../../compbio/runner/package-tree.html"><B>NEXT</B></A></FONT></TD>
\r
60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
\r
61 <A HREF="../../../index.html?compbio/pipeline/_jpred/package-tree.html" target="_top"><B>FRAMES</B></A>
\r
62 <A HREF="package-tree.html" target="_top"><B>NO FRAMES</B></A>
\r
63 <SCRIPT type="text/javascript">
\r
66 document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');
\r
71 <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>
\r
78 <A NAME="skip-navbar_top"></A>
\r
79 <!-- ========= END OF TOP NAVBAR ========= -->
\r
84 Hierarchy For Package compbio.pipeline._jpred
\r
88 <DT><B>Package Hierarchies:</B><DD><A HREF="../../../overview-tree.html">All Packages</A></DL>
\r
94 <LI TYPE="circle">java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang"><B>Object</B></A><UL>
\r
95 <LI TYPE="circle">compbio.pipeline._jpred.<A HREF="../../../compbio/pipeline/_jpred/BlastBlastComparator.html" title="class in compbio.pipeline._jpred"><B>BlastBlastComparator</B></A><LI TYPE="circle">compbio.pipeline._jpred.<A HREF="../../../compbio/pipeline/_jpred/BlastHmmerComparator.html" title="class in compbio.pipeline._jpred"><B>BlastHmmerComparator</B></A><LI TYPE="circle">compbio.pipeline._jpred.<A HREF="../../../compbio/pipeline/_jpred/BlastParser.html" title="class in compbio.pipeline._jpred"><B>BlastParser</B></A><LI TYPE="circle">compbio.pipeline._jpred.<A HREF="../../../compbio/pipeline/_jpred/Hit.html" title="class in compbio.pipeline._jpred"><B>Hit</B></A><LI TYPE="circle">compbio.pipeline._jpred.<A HREF="../../../compbio/pipeline/_jpred/Hit.EvalueComporator.html" title="class in compbio.pipeline._jpred"><B>Hit.EvalueComporator</B></A> (implements java.util.<A HREF="http://java.sun.com/javase/6/docs/api/java/util/Comparator.html?is-external=true" title="class or interface in java.util">Comparator</A><T>)
\r
96 <LI TYPE="circle">compbio.pipeline._jpred.<A HREF="../../../compbio/pipeline/_jpred/Hit.NumberComporator.html" title="class in compbio.pipeline._jpred"><B>Hit.NumberComporator</B></A> (implements java.util.<A HREF="http://java.sun.com/javase/6/docs/api/java/util/Comparator.html?is-external=true" title="class or interface in java.util">Comparator</A><T>)
\r
97 <LI TYPE="circle">compbio.pipeline._jpred.<A HREF="../../../compbio/pipeline/_jpred/JackHmmerHitParser.html" title="class in compbio.pipeline._jpred"><B>JackHmmerHitParser</B></A><LI TYPE="circle">compbio.pipeline._jpred.<A HREF="../../../compbio/pipeline/_jpred/Jpred4.html" title="class in compbio.pipeline._jpred"><B>Jpred4</B></A><LI TYPE="circle">compbio.pipeline._jpred.<A HREF="../../../compbio/pipeline/_jpred/Pairwise.html" title="class in compbio.pipeline._jpred"><B>Pairwise</B></A><LI TYPE="circle">compbio.pipeline._jpred.<A HREF="../../../compbio/pipeline/_jpred/PScore.html" title="class in compbio.pipeline._jpred"><B>PScore</B></A></UL>
\r
102 <!-- ======= START OF BOTTOM NAVBAR ====== -->
\r
103 <A NAME="navbar_bottom"><!-- --></A>
\r
104 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>
\r
105 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">
\r
107 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">
\r
108 <A NAME="navbar_bottom_firstrow"><!-- --></A>
\r
109 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">
\r
110 <TR ALIGN="center" VALIGN="top">
\r
111 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A> </TD>
\r
112 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A> </TD>
\r
113 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Class</FONT> </TD>
\r
114 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Use</FONT> </TD>
\r
115 <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> <FONT CLASS="NavBarFont1Rev"><B>Tree</B></FONT> </TD>
\r
116 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A> </TD>
\r
117 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A> </TD>
\r
118 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A> </TD>
\r
122 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
\r
128 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
\r
129 <A HREF="../../../compbio/metadata/package-tree.html"><B>PREV</B></A>
\r
130 <A HREF="../../../compbio/runner/package-tree.html"><B>NEXT</B></A></FONT></TD>
\r
131 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
\r
132 <A HREF="../../../index.html?compbio/pipeline/_jpred/package-tree.html" target="_top"><B>FRAMES</B></A>
\r
133 <A HREF="package-tree.html" target="_top"><B>NO FRAMES</B></A>
\r
134 <SCRIPT type="text/javascript">
\r
137 document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');
\r
142 <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>
\r
149 <A NAME="skip-navbar_bottom"></A>
\r
150 <!-- ======== END OF BOTTOM NAVBAR ======= -->
\r