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91 compbio.runner._impl</FONT>
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93 Class Environment</H2>
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96 <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.runner._impl.Environment</B>
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100 <DT><PRE>public final class <B>Environment</B><DT>extends java.lang.Object</DL>
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104 This is utility class to encapsulate environmental variables like directory paths
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109 <DT><B>Author:</B></DT>
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116 <!-- ========== METHOD SUMMARY =========== -->
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122 <B>Method Summary</B></FONT></TH>
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124 <TR BGCOLOR="white" CLASS="TableRowColor">
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125 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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126 <CODE>static java.lang.String</CODE></FONT></TD>
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127 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/Environment.html#getBlastBinDir()">getBlastBinDir</A></B>()</CODE>
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130 </TD>
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132 <TR BGCOLOR="white" CLASS="TableRowColor">
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133 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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134 <CODE>static java.lang.String</CODE></FONT></TD>
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135 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/Environment.html#getBlastDatabasesDir()">getBlastDatabasesDir</A></B>()</CODE>
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138 </TD>
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140 <TR BGCOLOR="white" CLASS="TableRowColor">
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141 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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142 <CODE>static java.lang.String</CODE></FONT></TD>
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143 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/Environment.html#getRPSBlastDatabasesDir()">getRPSBlastDatabasesDir</A></B>()</CODE>
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152 <TH ALIGN="left"><B>Methods inherited from class java.lang.Object</B></TH>
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155 <TD><CODE>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</CODE></TD>
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167 <B>Method Detail</B></FONT></TH>
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171 <A NAME="getBlastBinDir()"><!-- --></A><H3>
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172 getBlastBinDir</H3>
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174 public static java.lang.String <B>getBlastBinDir</B>()</PRE>
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182 <A NAME="getBlastDatabasesDir()"><!-- --></A><H3>
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183 getBlastDatabasesDir</H3>
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185 public static final java.lang.String <B>getBlastDatabasesDir</B>()</PRE>
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193 <A NAME="getRPSBlastDatabasesDir()"><!-- --></A><H3>
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194 getRPSBlastDatabasesDir</H3>
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196 public static final java.lang.String <B>getRPSBlastDatabasesDir</B>()</PRE>
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