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17 if (location.href.indexOf('is-external=true') == -1) {
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18 parent.document.title="OB";
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79 SUMMARY: NESTED | FIELD | <A HREF="#constructor_summary">CONSTR</A> | <A HREF="#method_summary">METHOD</A></FONT></TD>
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81 DETAIL: FIELD | <A HREF="#constructor_detail">CONSTR</A> | <A HREF="#method_detail">METHOD</A></FONT></TD>
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88 <!-- ======== START OF CLASS DATA ======== -->
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91 compbio.runner._impl</FONT>
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96 <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html" title="class in compbio.runner">compbio.runner._SkeletalCommandBuilder</A>
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97 <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.runner._impl.OB</B>
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100 <DT><B>All Implemented Interfaces:</B> <DD><A HREF="../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A><<A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html" title="class in compbio.runner">_SkeletalCommandBuilder</A>></DD>
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104 <DT><PRE>public class <B>OB</B><DT>extends <A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html" title="class in compbio.runner">_SkeletalCommandBuilder</A></DL>
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108 TODO this needs fixing! Executable does not work
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113 <DT><B>Author:</B></DT>
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119 <!-- ======== NESTED CLASS SUMMARY ======== -->
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124 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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125 <B>Nested Class Summary</B></FONT></TH>
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128 <A NAME="nested_classes_inherited_from_class_compbio.engine.client.Executable"><!-- --></A>
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129 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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130 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
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131 <TH ALIGN="left"><B>Nested classes/interfaces inherited from interface compbio.engine.client.<A HREF="../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A></B></TH>
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133 <TR BGCOLOR="white" CLASS="TableRowColor">
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134 <TD><CODE><A HREF="../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></CODE></TD>
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139 <!-- ======== CONSTRUCTOR SUMMARY ======== -->
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141 <A NAME="constructor_summary"><!-- --></A>
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142 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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143 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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144 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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145 <B>Constructor Summary</B></FONT></TH>
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147 <TR BGCOLOR="white" CLASS="TableRowColor">
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148 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/OB.html#OB()">OB</A></B>()</CODE>
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151 </TD>
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153 <TR BGCOLOR="white" CLASS="TableRowColor">
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154 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/OB.html#OB(java.lang.String)">OB</A></B>(java.lang.String workDirectory)</CODE>
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157 </TD>
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161 <!-- ========== METHOD SUMMARY =========== -->
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163 <A NAME="method_summary"><!-- --></A>
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166 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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167 <B>Method Summary</B></FONT></TH>
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169 <TR BGCOLOR="white" CLASS="TableRowColor">
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170 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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171 <CODE> java.util.List<java.lang.String></CODE></FONT></TD>
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172 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/OB.html#getCreatedFiles()">getCreatedFiles</A></B>()</CODE>
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175 </TD>
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177 <TR BGCOLOR="white" CLASS="TableRowColor">
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178 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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179 <CODE> java.lang.String</CODE></FONT></TD>
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180 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/OB.html#getInput()">getInput</A></B>()</CODE>
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183 </TD>
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185 <TR BGCOLOR="white" CLASS="TableRowColor">
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186 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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187 <CODE> java.util.List<java.lang.String></CODE></FONT></TD>
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188 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/OB.html#getTestArgs()">getTestArgs</A></B>()</CODE>
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191 </TD>
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193 <TR BGCOLOR="white" CLASS="TableRowColor">
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194 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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195 <CODE>static java.lang.String</CODE></FONT></TD>
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196 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/OB.html#getTestCommand()">getTestCommand</A></B>()</CODE>
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199 </TD>
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201 <TR BGCOLOR="white" CLASS="TableRowColor">
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202 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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203 <CODE>static void</CODE></FONT></TD>
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204 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/OB.html#main(java.lang.String[])">main</A></B>(java.lang.String[] args)</CODE>
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207 </TD>
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210 <A NAME="methods_inherited_from_class_compbio.runner._SkeletalCommandBuilder"><!-- --></A>
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211 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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212 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
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213 <TH ALIGN="left"><B>Methods inherited from class compbio.runner.<A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html" title="class in compbio.runner">_SkeletalCommandBuilder</A></B></TH>
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215 <TR BGCOLOR="white" CLASS="TableRowColor">
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216 <TD><CODE><A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html#addParameter(java.lang.String)">addParameter</A>, <A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html#addParameters(java.util.List)">addParameters</A>, <A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html#addParameters(java.lang.String[])">addParameters</A>, <A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html#getEmail()">getEmail</A>, <A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html#getError()">getError</A>, <A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html#getLimit(java.lang.String)">getLimit</A>, <A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html#getLimits()">getLimits</A>, <A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html#getName()">getName</A>, <A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html#getOutput()">getOutput</A>, <A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html#getParameters(compbio.engine.client.Executable.ExecProvider)">getParameters</A>, <A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html#getResults(java.lang.String)">getResults</A>, <A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html#loadRunConfiguration(compbio.engine.client.RunConfiguration)">loadRunConfiguration</A>, <A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html#setEmail(java.lang.String)">setEmail</A>, <A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html#setName(java.lang.String)">setName</A></CODE></TD>
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219 <A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>
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220 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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221 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
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222 <TH ALIGN="left"><B>Methods inherited from class java.lang.Object</B></TH>
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224 <TR BGCOLOR="white" CLASS="TableRowColor">
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225 <TD><CODE>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</CODE></TD>
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231 <!-- ========= CONSTRUCTOR DETAIL ======== -->
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233 <A NAME="constructor_detail"><!-- --></A>
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234 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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235 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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236 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
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237 <B>Constructor Detail</B></FONT></TH>
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241 <A NAME="OB()"><!-- --></A><H3>
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244 public <B>OB</B>()</PRE>
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249 <A NAME="OB(java.lang.String)"><!-- --></A><H3>
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252 public <B>OB</B>(java.lang.String workDirectory)</PRE>
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256 <!-- ============ METHOD DETAIL ========== -->
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258 <A NAME="method_detail"><!-- --></A>
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259 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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260 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
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261 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
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262 <B>Method Detail</B></FONT></TH>
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266 <A NAME="getTestCommand()"><!-- --></A><H3>
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267 getTestCommand</H3>
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269 public static java.lang.String <B>getTestCommand</B>()</PRE>
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277 <A NAME="getTestArgs()"><!-- --></A><H3>
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280 public java.util.List<java.lang.String> <B>getTestArgs</B>()</PRE>
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288 <A NAME="main(java.lang.String[])"><!-- --></A><H3>
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291 public static void <B>main</B>(java.lang.String[] args)</PRE>
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299 <A NAME="getCreatedFiles()"><!-- --></A><H3>
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300 getCreatedFiles</H3>
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302 public java.util.List<java.lang.String> <B>getCreatedFiles</B>()</PRE>
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310 <A NAME="getInput()"><!-- --></A><H3>
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313 public java.lang.String <B>getInput</B>()</PRE>
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343 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
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349 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
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355 <SCRIPT type="text/javascript">
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358 document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');
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