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15 function windowTitle()
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17 if (location.href.indexOf('is-external=true') == -1) {
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18 parent.document.title="Runners";
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79 SUMMARY: NESTED | FIELD | CONSTR | <A HREF="#method_summary">METHOD</A></FONT></TD>
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88 <!-- ======== START OF CLASS DATA ======== -->
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91 compbio.runner._impl</FONT>
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96 <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.runner._impl.Runners</B>
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100 <DT><PRE>public final class <B>Runners</B><DT>extends java.lang.Object</DL>
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108 <!-- ========== METHOD SUMMARY =========== -->
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110 <A NAME="method_summary"><!-- --></A>
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111 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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113 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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114 <B>Method Summary</B></FONT></TH>
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116 <TR BGCOLOR="white" CLASS="TableRowColor">
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117 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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118 <CODE>static <A HREF="../../../compbio/runner/_impl/BlastAll.html" title="class in compbio.runner._impl">BlastAll</A></CODE></FONT></TD>
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119 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/Runners.html#getBlastAllRunnable(java.lang.String)">getBlastAllRunnable</A></B>(java.lang.String workDirectory)</CODE>
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122 </TD>
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124 <TR BGCOLOR="white" CLASS="TableRowColor">
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125 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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126 <CODE>static <A HREF="../../../compbio/runner/_impl/Disembl.html" title="class in compbio.runner._impl">Disembl</A></CODE></FONT></TD>
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127 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/Runners.html#getDisemblRunnable(java.lang.String)">getDisemblRunnable</A></B>(java.lang.String workDirectory)</CODE>
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130 </TD>
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132 <TR BGCOLOR="white" CLASS="TableRowColor">
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133 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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134 <CODE>static <A HREF="../../../compbio/runner/_impl/Mcl.html" title="class in compbio.runner._impl">Mcl</A></CODE></FONT></TD>
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135 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/Runners.html#getMclRunnable(java.lang.String)">getMclRunnable</A></B>(java.lang.String workDirectory)</CODE>
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138 </TD>
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140 <TR BGCOLOR="white" CLASS="TableRowColor">
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141 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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142 <CODE>static <A HREF="../../../compbio/runner/_impl/NetNglyc.html" title="class in compbio.runner._impl">NetNglyc</A></CODE></FONT></TD>
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143 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/Runners.html#getNetNglycRunnable(java.lang.String)">getNetNglycRunnable</A></B>(java.lang.String workDirectory)</CODE>
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146 </TD>
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148 <TR BGCOLOR="white" CLASS="TableRowColor">
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149 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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150 <CODE>static <A HREF="../../../compbio/runner/_impl/OB.html" title="class in compbio.runner._impl">OB</A></CODE></FONT></TD>
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151 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/Runners.html#getOBRunnable(java.lang.String)">getOBRunnable</A></B>(java.lang.String workDirectory)</CODE>
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154 </TD>
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156 <TR BGCOLOR="white" CLASS="TableRowColor">
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157 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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158 <CODE>static <A HREF="../../../compbio/runner/_impl/PSIBlast.html" title="class in compbio.runner._impl">PSIBlast</A></CODE></FONT></TD>
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159 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/Runners.html#getPSIBlastRunnable(java.lang.String)">getPSIBlastRunnable</A></B>(java.lang.String workDirectory)</CODE>
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162 </TD>
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164 <TR BGCOLOR="white" CLASS="TableRowColor">
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165 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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166 <CODE>static <A HREF="../../../compbio/runner/_impl/Ronn.html" title="class in compbio.runner._impl">Ronn</A></CODE></FONT></TD>
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167 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/Runners.html#getRonnRunnable(java.lang.String)">getRonnRunnable</A></B>(java.lang.String workDirectory)</CODE>
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170 </TD>
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172 <TR BGCOLOR="white" CLASS="TableRowColor">
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173 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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174 <CODE>static <A HREF="../../../compbio/runner/_impl/RPSBlast.html" title="class in compbio.runner._impl">RPSBlast</A></CODE></FONT></TD>
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175 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/Runners.html#getRPSBlastRunnable(java.lang.String)">getRPSBlastRunnable</A></B>(java.lang.String workDirectory)</CODE>
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178 </TD>
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180 <TR BGCOLOR="white" CLASS="TableRowColor">
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181 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
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182 <CODE>static compbio.runner._impl.Tmhmm2</CODE></FONT></TD>
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183 <TD><CODE><B><A HREF="../../../compbio/runner/_impl/Runners.html#getTmhmm2Runnable(java.lang.String)">getTmhmm2Runnable</A></B>(java.lang.String workDirectory)</CODE>
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186 </TD>
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189 <A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>
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190 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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191 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
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192 <TH ALIGN="left"><B>Methods inherited from class java.lang.Object</B></TH>
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194 <TR BGCOLOR="white" CLASS="TableRowColor">
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195 <TD><CODE>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</CODE></TD>
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201 <!-- ============ METHOD DETAIL ========== -->
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206 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
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207 <B>Method Detail</B></FONT></TH>
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211 <A NAME="getMclRunnable(java.lang.String)"><!-- --></A><H3>
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212 getMclRunnable</H3>
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214 public static <A HREF="../../../compbio/runner/_impl/Mcl.html" title="class in compbio.runner._impl">Mcl</A> <B>getMclRunnable</B>(java.lang.String workDirectory)</PRE>
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222 <A NAME="getOBRunnable(java.lang.String)"><!-- --></A><H3>
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225 public static <A HREF="../../../compbio/runner/_impl/OB.html" title="class in compbio.runner._impl">OB</A> <B>getOBRunnable</B>(java.lang.String workDirectory)</PRE>
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233 <A NAME="getDisemblRunnable(java.lang.String)"><!-- --></A><H3>
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234 getDisemblRunnable</H3>
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236 public static <A HREF="../../../compbio/runner/_impl/Disembl.html" title="class in compbio.runner._impl">Disembl</A> <B>getDisemblRunnable</B>(java.lang.String workDirectory)</PRE>
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244 <A NAME="getNetNglycRunnable(java.lang.String)"><!-- --></A><H3>
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245 getNetNglycRunnable</H3>
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247 public static <A HREF="../../../compbio/runner/_impl/NetNglyc.html" title="class in compbio.runner._impl">NetNglyc</A> <B>getNetNglycRunnable</B>(java.lang.String workDirectory)</PRE>
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255 <A NAME="getRonnRunnable(java.lang.String)"><!-- --></A><H3>
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256 getRonnRunnable</H3>
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258 public static <A HREF="../../../compbio/runner/_impl/Ronn.html" title="class in compbio.runner._impl">Ronn</A> <B>getRonnRunnable</B>(java.lang.String workDirectory)</PRE>
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266 <A NAME="getTmhmm2Runnable(java.lang.String)"><!-- --></A><H3>
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267 getTmhmm2Runnable</H3>
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269 public static compbio.runner._impl.Tmhmm2 <B>getTmhmm2Runnable</B>(java.lang.String workDirectory)</PRE>
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277 <A NAME="getRPSBlastRunnable(java.lang.String)"><!-- --></A><H3>
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278 getRPSBlastRunnable</H3>
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280 public static <A HREF="../../../compbio/runner/_impl/RPSBlast.html" title="class in compbio.runner._impl">RPSBlast</A> <B>getRPSBlastRunnable</B>(java.lang.String workDirectory)</PRE>
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288 <A NAME="getBlastAllRunnable(java.lang.String)"><!-- --></A><H3>
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289 getBlastAllRunnable</H3>
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291 public static <A HREF="../../../compbio/runner/_impl/BlastAll.html" title="class in compbio.runner._impl">BlastAll</A> <B>getBlastAllRunnable</B>(java.lang.String workDirectory)</PRE>
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299 <A NAME="getPSIBlastRunnable(java.lang.String)"><!-- --></A><H3>
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300 getPSIBlastRunnable</H3>
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302 public static <A HREF="../../../compbio/runner/_impl/PSIBlast.html" title="class in compbio.runner._impl">PSIBlast</A> <B>getPSIBlastRunnable</B>(java.lang.String workDirectory)</PRE>
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