1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
\r
5 <!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:30:41 GMT 2011 -->
\r
10 <META NAME="date" CONTENT="2011-12-07">
\r
12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">
\r
14 <SCRIPT type="text/javascript">
\r
15 function windowTitle()
\r
17 if (location.href.indexOf('is-external=true') == -1) {
\r
18 parent.document.title="GlobPlot";
\r
27 <BODY BGCOLOR="white" onload="windowTitle();">
\r
31 <!-- ========= START OF TOP NAVBAR ======= -->
\r
32 <A NAME="navbar_top"><!-- --></A>
\r
33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>
\r
34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">
\r
36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">
\r
37 <A NAME="navbar_top_firstrow"><!-- --></A>
\r
38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">
\r
39 <TR ALIGN="center" VALIGN="top">
\r
40 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A> </TD>
\r
41 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A> </TD>
\r
42 <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> <FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT> </TD>
\r
43 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="class-use/GlobPlot.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A> </TD>
\r
44 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A> </TD>
\r
45 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A> </TD>
\r
46 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A> </TD>
\r
47 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A> </TD>
\r
51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
\r
57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
\r
58 <A HREF="../../../compbio/runner/disorder/Disembl.html" title="class in compbio.runner.disorder"><B>PREV CLASS</B></A>
\r
59 <A HREF="../../../compbio/runner/disorder/IUPred.html" title="class in compbio.runner.disorder"><B>NEXT CLASS</B></A></FONT></TD>
\r
60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
\r
61 <A HREF="../../../index.html?compbio/runner/disorder/GlobPlot.html" target="_top"><B>FRAMES</B></A>
\r
62 <A HREF="GlobPlot.html" target="_top"><B>NO FRAMES</B></A>
\r
63 <SCRIPT type="text/javascript">
\r
66 document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');
\r
71 <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>
\r
78 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">
\r
79 SUMMARY: NESTED | <A HREF="#field_summary">FIELD</A> | <A HREF="#constructor_summary">CONSTR</A> | <A HREF="#method_summary">METHOD</A></FONT></TD>
\r
80 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">
\r
81 DETAIL: <A HREF="#field_detail">FIELD</A> | <A HREF="#constructor_detail">CONSTR</A> | <A HREF="#method_detail">METHOD</A></FONT></TD>
\r
84 <A NAME="skip-navbar_top"></A>
\r
85 <!-- ========= END OF TOP NAVBAR ========= -->
\r
88 <!-- ======== START OF CLASS DATA ======== -->
\r
91 compbio.runner.disorder</FONT>
\r
95 <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>
\r
96 <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><A HREF="../../../compbio/engine/client/SkeletalExecutable.html" title="class in compbio.engine.client">compbio.engine.client.SkeletalExecutable</A><<A HREF="../../../compbio/runner/disorder/GlobPlot.html" title="class in compbio.runner.disorder">GlobPlot</A>>
\r
97 <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.runner.disorder.GlobPlot</B>
\r
100 <DT><B>All Implemented Interfaces:</B> <DD><A HREF="../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A><<A HREF="../../../compbio/runner/disorder/GlobPlot.html" title="class in compbio.runner.disorder">GlobPlot</A>>, <A HREF="../../../compbio/engine/client/PipedExecutable.html" title="interface in compbio.engine.client">PipedExecutable</A><<A HREF="../../../compbio/runner/disorder/GlobPlot.html" title="class in compbio.runner.disorder">GlobPlot</A>></DD>
\r
104 <DT><PRE>public class <B>GlobPlot</B><DT>extends <A HREF="../../../compbio/engine/client/SkeletalExecutable.html" title="class in compbio.engine.client">SkeletalExecutable</A><<A HREF="../../../compbio/runner/disorder/GlobPlot.html" title="class in compbio.runner.disorder">GlobPlot</A>><DT>implements <A HREF="../../../compbio/engine/client/PipedExecutable.html" title="interface in compbio.engine.client">PipedExecutable</A><<A HREF="../../../compbio/runner/disorder/GlobPlot.html" title="class in compbio.runner.disorder">GlobPlot</A>></DL>
\r
108 ./GlobPipe.py SmoothFrame DOMjoinFrame DOMpeakFrame DISjoinFrame DISpeakFrame
110 FASTAfile' Optimised for ELM: ./GlobPlot.py 10 8 75 8 8 sequence_file'
111 Webserver settings: ./GlobPlot.py 10 15 74 4 5 sequence_file'
113 Hard-coded values are 10 15 74 4 5.
115 Changing these values are not recommended by developers, apart from smoothing
116 window. However, the binary, GlobPlot depends on - Tisean which is not happy
117 with arbitrary changes to these values, so changing them can lead to
118 problems. May be we can offer preset?
120 This is not a standard GlobPlot! The script has been modified!
\r
127 <!-- ======== NESTED CLASS SUMMARY ======== -->
\r
129 <A NAME="nested_class_summary"><!-- --></A>
\r
130 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
131 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
132 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
133 <B>Nested Class Summary</B></FONT></TH>
\r
136 <A NAME="nested_classes_inherited_from_class_compbio.engine.client.Executable"><!-- --></A>
\r
137 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
138 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
\r
139 <TH ALIGN="left"><B>Nested classes/interfaces inherited from interface compbio.engine.client.<A HREF="../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A></B></TH>
\r
141 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
142 <TD><CODE><A HREF="../../../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A></CODE></TD>
\r
146 <!-- =========== FIELD SUMMARY =========== -->
\r
148 <A NAME="field_summary"><!-- --></A>
\r
149 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
150 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
151 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
152 <B>Field Summary</B></FONT></TH>
\r
154 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
155 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
\r
156 <CODE>static <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>
\r
157 <TD><CODE><B><A HREF="../../../compbio/runner/disorder/GlobPlot.html#KEY_VALUE_SEPARATOR">KEY_VALUE_SEPARATOR</A></B></CODE>
\r
160 </TD>
\r
163 <A NAME="fields_inherited_from_class_compbio.engine.client.SkeletalExecutable"><!-- --></A>
\r
164 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
165 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
\r
166 <TH ALIGN="left"><B>Fields inherited from class compbio.engine.client.<A HREF="../../../compbio/engine/client/SkeletalExecutable.html" title="class in compbio.engine.client">SkeletalExecutable</A></B></TH>
\r
168 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
169 <TD><CODE><A HREF="../../../compbio/engine/client/SkeletalExecutable.html#ERROR">ERROR</A>, <A HREF="../../../compbio/engine/client/SkeletalExecutable.html#INPUT">INPUT</A>, <A HREF="../../../compbio/engine/client/SkeletalExecutable.html#OUTPUT">OUTPUT</A></CODE></TD>
\r
173 <!-- ======== CONSTRUCTOR SUMMARY ======== -->
\r
175 <A NAME="constructor_summary"><!-- --></A>
\r
176 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
177 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
178 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
179 <B>Constructor Summary</B></FONT></TH>
\r
181 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
182 <TD><CODE><B><A HREF="../../../compbio/runner/disorder/GlobPlot.html#GlobPlot()">GlobPlot</A></B>()</CODE>
\r
185 </TD>
\r
189 <!-- ========== METHOD SUMMARY =========== -->
\r
191 <A NAME="method_summary"><!-- --></A>
\r
192 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
193 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
194 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
\r
195 <B>Method Summary</B></FONT></TH>
\r
197 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
198 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
\r
199 <CODE> <A HREF="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A></CODE></FONT></TD>
\r
200 <TD><CODE><B><A HREF="../../../compbio/runner/disorder/GlobPlot.html#getResults(java.lang.String)">getResults</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> workDirectory)</CODE>
\r
203 </TD>
\r
205 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
206 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
\r
207 <CODE> <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A><<A HREF="../../../compbio/runner/disorder/GlobPlot.html" title="class in compbio.runner.disorder">GlobPlot</A>></CODE></FONT></TD>
\r
208 <TD><CODE><B><A HREF="../../../compbio/runner/disorder/GlobPlot.html#getType()">getType</A></B>()</CODE>
\r
211 </TD>
\r
213 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
214 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
\r
215 <CODE> <A HREF="../../../compbio/runner/disorder/GlobPlot.html" title="class in compbio.runner.disorder">GlobPlot</A></CODE></FONT></TD>
\r
216 <TD><CODE><B><A HREF="../../../compbio/runner/disorder/GlobPlot.html#setInput(java.lang.String)">setInput</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> inFile)</CODE>
\r
219 </TD>
\r
222 <A NAME="methods_inherited_from_class_compbio.engine.client.SkeletalExecutable"><!-- --></A>
\r
223 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
224 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
\r
225 <TH ALIGN="left"><B>Methods inherited from class compbio.engine.client.<A HREF="../../../compbio/engine/client/SkeletalExecutable.html" title="class in compbio.engine.client">SkeletalExecutable</A></B></TH>
\r
227 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
228 <TD><CODE><A HREF="../../../compbio/engine/client/SkeletalExecutable.html#addParameters(java.util.List)">addParameters</A>, <A HREF="../../../compbio/engine/client/SkeletalExecutable.html#equals(java.lang.Object)">equals</A>, <A HREF="../../../compbio/engine/client/SkeletalExecutable.html#getClusterCpuNum(java.lang.Class)">getClusterCpuNum</A>, <A HREF="../../../compbio/engine/client/SkeletalExecutable.html#getClusterJobSettings()">getClusterJobSettings</A>, <A HREF="../../../compbio/engine/client/SkeletalExecutable.html#getCreatedFiles()">getCreatedFiles</A>, <A HREF="../../../compbio/engine/client/SkeletalExecutable.html#getError()">getError</A>, <A HREF="../../../compbio/engine/client/SkeletalExecutable.html#getInput()">getInput</A>, <A HREF="../../../compbio/engine/client/SkeletalExecutable.html#getLimit(java.lang.String)">getLimit</A>, <A HREF="../../../compbio/engine/client/SkeletalExecutable.html#getLimits()">getLimits</A>, <A HREF="../../../compbio/engine/client/SkeletalExecutable.html#getOutput()">getOutput</A>, <A HREF="../../../compbio/engine/client/SkeletalExecutable.html#getParameters(compbio.engine.client.Executable.ExecProvider)">getParameters</A>, <A HREF="../../../compbio/engine/client/SkeletalExecutable.html#hashCode()">hashCode</A>, <A HREF="../../../compbio/engine/client/SkeletalExecutable.html#loadRunConfiguration(compbio.engine.client.RunConfiguration)">loadRunConfiguration</A>, <A HREF="../../../compbio/engine/client/SkeletalExecutable.html#setError(java.lang.String)">setError</A>, <A HREF="../../../compbio/engine/client/SkeletalExecutable.html#setOutput(java.lang.String)">setOutput</A>, <A HREF="../../../compbio/engine/client/SkeletalExecutable.html#setParameter(java.lang.String)">setParameter</A>, <A HREF="../../../compbio/engine/client/SkeletalExecutable.html#toString()">toString</A></CODE></TD>
\r
231 <A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>
\r
232 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
233 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
\r
234 <TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>
\r
236 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
237 <TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>
\r
240 <A NAME="methods_inherited_from_class_compbio.engine.client.Executable"><!-- --></A>
\r
241 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
242 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
\r
243 <TH ALIGN="left"><B>Methods inherited from interface compbio.engine.client.<A HREF="../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A></B></TH>
\r
245 <TR BGCOLOR="white" CLASS="TableRowColor">
\r
246 <TD><CODE><A HREF="../../../compbio/engine/client/Executable.html#addParameters(java.util.List)">addParameters</A>, <A HREF="../../../compbio/engine/client/Executable.html#getClusterJobSettings()">getClusterJobSettings</A>, <A HREF="../../../compbio/engine/client/Executable.html#getCreatedFiles()">getCreatedFiles</A>, <A HREF="../../../compbio/engine/client/Executable.html#getError()">getError</A>, <A HREF="../../../compbio/engine/client/Executable.html#getInput()">getInput</A>, <A HREF="../../../compbio/engine/client/Executable.html#getLimit(java.lang.String)">getLimit</A>, <A HREF="../../../compbio/engine/client/Executable.html#getLimits()">getLimits</A>, <A HREF="../../../compbio/engine/client/Executable.html#getOutput()">getOutput</A>, <A HREF="../../../compbio/engine/client/Executable.html#getParameters(compbio.engine.client.Executable.ExecProvider)">getParameters</A>, <A HREF="../../../compbio/engine/client/Executable.html#loadRunConfiguration(compbio.engine.client.RunConfiguration)">loadRunConfiguration</A></CODE></TD>
\r
252 <!-- ============ FIELD DETAIL =========== -->
\r
254 <A NAME="field_detail"><!-- --></A>
\r
255 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
256 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
257 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
\r
258 <B>Field Detail</B></FONT></TH>
\r
262 <A NAME="KEY_VALUE_SEPARATOR"><!-- --></A><H3>
\r
263 KEY_VALUE_SEPARATOR</H3>
\r
265 public static final <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>KEY_VALUE_SEPARATOR</B></PRE>
\r
268 <DT><B>See Also:</B><DD><A HREF="../../../constant-values.html#compbio.runner.disorder.GlobPlot.KEY_VALUE_SEPARATOR">Constant Field Values</A></DL>
\r
271 <!-- ========= CONSTRUCTOR DETAIL ======== -->
\r
273 <A NAME="constructor_detail"><!-- --></A>
\r
274 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
275 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
276 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
\r
277 <B>Constructor Detail</B></FONT></TH>
\r
281 <A NAME="GlobPlot()"><!-- --></A><H3>
\r
284 public <B>GlobPlot</B>()</PRE>
\r
288 <!-- ============ METHOD DETAIL ========== -->
\r
290 <A NAME="method_detail"><!-- --></A>
\r
291 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
\r
292 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
\r
293 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
\r
294 <B>Method Detail</B></FONT></TH>
\r
298 <A NAME="getResults(java.lang.String)"><!-- --></A><H3>
\r
301 public <A HREF="../../../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A> <B>getResults</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> workDirectory)
\r
302 throws <A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A></PRE>
\r
305 <DT><B>Specified by:</B><DD><CODE><A HREF="../../../compbio/engine/client/Executable.html#getResults(java.lang.String)">getResults</A></CODE> in interface <CODE><A HREF="../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A><<A HREF="../../../compbio/runner/disorder/GlobPlot.html" title="class in compbio.runner.disorder">GlobPlot</A>></CODE></DL>
\r
310 <DD><CODE><A HREF="../../../compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A></CODE></DL>
\r
315 <A NAME="setInput(java.lang.String)"><!-- --></A><H3>
\r
318 public <A HREF="../../../compbio/runner/disorder/GlobPlot.html" title="class in compbio.runner.disorder">GlobPlot</A> <B>setInput</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> inFile)</PRE>
\r
321 <DT><B>Overrides:</B><DD><CODE><A HREF="../../../compbio/engine/client/SkeletalExecutable.html#setInput(java.lang.String)">setInput</A></CODE> in class <CODE><A HREF="../../../compbio/engine/client/SkeletalExecutable.html" title="class in compbio.engine.client">SkeletalExecutable</A><<A HREF="../../../compbio/runner/disorder/GlobPlot.html" title="class in compbio.runner.disorder">GlobPlot</A>></CODE></DL>
\r
329 <A NAME="getType()"><!-- --></A><H3>
\r
332 public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Class.html?is-external=true" title="class or interface in java.lang">Class</A><<A HREF="../../../compbio/runner/disorder/GlobPlot.html" title="class in compbio.runner.disorder">GlobPlot</A>> <B>getType</B>()</PRE>
\r
335 <DT><B>Specified by:</B><DD><CODE><A HREF="../../../compbio/engine/client/SkeletalExecutable.html#getType()">getType</A></CODE> in class <CODE><A HREF="../../../compbio/engine/client/SkeletalExecutable.html" title="class in compbio.engine.client">SkeletalExecutable</A><<A HREF="../../../compbio/runner/disorder/GlobPlot.html" title="class in compbio.runner.disorder">GlobPlot</A>></CODE></DL>
\r
339 <DT><B>Returns:</B><DD>subclasses must return their type</DL>
\r
342 <!-- ========= END OF CLASS DATA ========= -->
\r
346 <!-- ======= START OF BOTTOM NAVBAR ====== -->
\r
347 <A NAME="navbar_bottom"><!-- --></A>
\r
348 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>
\r
349 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">
\r
351 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">
\r
352 <A NAME="navbar_bottom_firstrow"><!-- --></A>
\r
353 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">
\r
354 <TR ALIGN="center" VALIGN="top">
\r
355 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A> </TD>
\r
356 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A> </TD>
\r
357 <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> <FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT> </TD>
\r
358 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="class-use/GlobPlot.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A> </TD>
\r
359 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A> </TD>
\r
360 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A> </TD>
\r
361 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A> </TD>
\r
362 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A> </TD>
\r
366 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
\r
372 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
\r
373 <A HREF="../../../compbio/runner/disorder/Disembl.html" title="class in compbio.runner.disorder"><B>PREV CLASS</B></A>
\r
374 <A HREF="../../../compbio/runner/disorder/IUPred.html" title="class in compbio.runner.disorder"><B>NEXT CLASS</B></A></FONT></TD>
\r
375 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
\r
376 <A HREF="../../../index.html?compbio/runner/disorder/GlobPlot.html" target="_top"><B>FRAMES</B></A>
\r
377 <A HREF="GlobPlot.html" target="_top"><B>NO FRAMES</B></A>
\r
378 <SCRIPT type="text/javascript">
\r
381 document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');
\r
386 <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>
\r
393 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">
\r
394 SUMMARY: NESTED | <A HREF="#field_summary">FIELD</A> | <A HREF="#constructor_summary">CONSTR</A> | <A HREF="#method_summary">METHOD</A></FONT></TD>
\r
395 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">
\r
396 DETAIL: <A HREF="#field_detail">FIELD</A> | <A HREF="#constructor_detail">CONSTR</A> | <A HREF="#method_detail">METHOD</A></FONT></TD>
\r
399 <A NAME="skip-navbar_bottom"></A>
\r
400 <!-- ======== END OF BOTTOM NAVBAR ======= -->
\r