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83 Package compbio.runner.disorder
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89 <B>Class Summary</B></FONT></TH>
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91 <TR BGCOLOR="white" CLASS="TableRowColor">
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92 <TD WIDTH="15%"><B><A HREF="../../../compbio/runner/disorder/Disembl.html" title="class in compbio.runner.disorder">Disembl</A></B></TD>
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93 <TD>DisEMBL.py smooth_frame peak_frame join_frame fold_coils fold_hotloops
94 fold_rem465 sequence_file print
96 'A default run would be: ./DisEMBL.py 8 8 4 1.2 1.4 1.2 fasta_file > out'
98 This version of DisEMBL is 1.4 (latest available for download in Feb 2011)
99 capable of outputting raw values
101 The values of the parameters are hard coded in DisEMBL.py script.</TD>
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103 <TR BGCOLOR="white" CLASS="TableRowColor">
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104 <TD WIDTH="15%"><B><A HREF="../../../compbio/runner/disorder/GlobPlot.html" title="class in compbio.runner.disorder">GlobPlot</A></B></TD>
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105 <TD>./GlobPipe.py SmoothFrame DOMjoinFrame DOMpeakFrame DISjoinFrame DISpeakFrame
107 FASTAfile' Optimised for ELM: ./GlobPlot.py 10 8 75 8 8 sequence_file'
108 Webserver settings: ./GlobPlot.py 10 15 74 4 5 sequence_file'
110 Hard-coded values are 10 15 74 4 5.</TD>
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113 <TD WIDTH="15%"><B><A HREF="../../../compbio/runner/disorder/IUPred.html" title="class in compbio.runner.disorder">IUPred</A></B></TD>
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114 <TD>iupred sequenceFile <short long glob >
116 Maximum sequence length is 40000 chars.</TD>
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119 <TD WIDTH="15%"><B><A HREF="../../../compbio/runner/disorder/Jronn.html" title="class in compbio.runner.disorder">Jronn</A></B></TD>
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122 java -Xmx512 -jar jronn_v3.jar -i=test_seq.txt -n=1 -o=out.txt -s=stat.out</TD>
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