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82 <A NAME="_D_"><!-- --></A><H2>
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85 <DT><A HREF="../compbio/engine/cluster/drmaa/JobRunner.html#deepClean()"><B>deepClean()</B></A> -
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86 Method in class compbio.engine.cluster.drmaa.<A HREF="../compbio/engine/cluster/drmaa/JobRunner.html" title="class in compbio.engine.cluster.drmaa">JobRunner</A>
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88 <DT><A HREF="../compbio/data/sequence/SequenceUtil.html#deepCleanSequence(java.lang.String)"><B>deepCleanSequence(String)</B></A> -
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89 Static method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence">SequenceUtil</A>
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90 <DD>Removes all special characters and digits as well as whitespace chars
92 <DT><A HREF="../compbio/engine/Cleaner.html#deleteAllFiles(java.lang.String)"><B>deleteAllFiles(String)</B></A> -
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93 Static method in class compbio.engine.<A HREF="../compbio/engine/Cleaner.html" title="class in compbio.engine">Cleaner</A>
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95 <DT><A HREF="../compbio/engine/Cleaner.html#deleteFiles(compbio.engine.client.ConfiguredExecutable)"><B>deleteFiles(ConfiguredExecutable<?>)</B></A> -
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96 Static method in class compbio.engine.<A HREF="../compbio/engine/Cleaner.html" title="class in compbio.engine">Cleaner</A>
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97 <DD>This method returns true if all files specified by List files were
98 successfully removed or there was no files to remove (files list was
100 <DT><A HREF="../compbio/engine/conf/_Key.html#DELIM"><B>DELIM</B></A> -
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101 Static variable in class compbio.engine.conf.<A HREF="../compbio/engine/conf/_Key.html" title="class in compbio.engine.conf">_Key</A>
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103 <DT><A HREF="../compbio/engine/conf/DirectoryManager.html#DELIM"><B>DELIM</B></A> -
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104 Static variable in class compbio.engine.conf.<A HREF="../compbio/engine/conf/DirectoryManager.html" title="class in compbio.engine.conf">DirectoryManager</A>
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106 <DT><A HREF="../compbio/data/sequence/SequenceUtil.html#DIGIT"><B>DIGIT</B></A> -
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107 Static variable in class compbio.data.sequence.<A HREF="../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence">SequenceUtil</A>
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109 <DT><A HREF="../compbio/engine/conf/DirectoryManager.html" title="class in compbio.engine.conf"><B>DirectoryManager</B></A> - Class in <A HREF="../compbio/engine/conf/package-summary.html">compbio.engine.conf</A><DD> <DT><A HREF="../compbio/engine/conf/DirectoryManager.html#DirectoryManager()"><B>DirectoryManager()</B></A> -
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110 Constructor for class compbio.engine.conf.<A HREF="../compbio/engine/conf/DirectoryManager.html" title="class in compbio.engine.conf">DirectoryManager</A>
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112 <DT><A HREF="../compbio/engine/FilePuller.html#disconnect()"><B>disconnect()</B></A> -
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113 Method in class compbio.engine.<A HREF="../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A>
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115 <DT><A HREF="../compbio/runner/_impl/Disembl.html" title="class in compbio.runner._impl"><B>Disembl</B></A> - Class in <A HREF="../compbio/runner/_impl/package-summary.html">compbio.runner._impl</A><DD> <DT><A HREF="../compbio/runner/_impl/Disembl.html#Disembl(java.lang.String)"><B>Disembl(String)</B></A> -
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116 Constructor for class compbio.runner._impl.<A HREF="../compbio/runner/_impl/Disembl.html" title="class in compbio.runner._impl">Disembl</A>
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