2 ./jpred.pl -in/-sequence <FILE1> [-out/-output <FILEPREFIX>] [-dbname
3 <DBNAME>] [-dbpath <PATH>] [-ncpu NNN] [-psi <psiblast output>]
4 [-pred-nohits] [-verbose] [-debug] [-help] [-man]
8 The path to the sequence file (in FASTA format) you want to
11 -out/-output FILEPREFIX
12 A prefix to the filenames created by Jpred, defaults to the value
16 Path to the uniref database used for PSI-BLAST querying.
20 Database to use for PSI-BLAST querying. This only accepts databases
21 from a list which is pre-defined in the code.
25 Path to a PSI-BLAST output file.
28 Number of CPU used by jpred.pl. Maximum value is 8
32 Toggle allowing Jpred to make predictions even when there are no
36 Verbose mode. Print more information while running jpred.
39 Debug mode. Print debugging information while running jpred.
42 Gives help on the programs usage.
44 -man Displays this man page.