1 <?xml version="1.0" encoding="UTF-8"?>
2 <testsuite name="Ant test" failures="0" tests="216" time="453.928" errors="0">
4 <testcase name="testPull" time="0.014" classname="compbio.engine.FilePullerTester"/>
5 <testcase name="testCache" time="6.008" classname="compbio.engine.FilePullerTester"/>
6 <testcase name="testArguments" time="1.649" classname="compbio.runner.msa.ClustalWParametersTester"/>
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15 <testcase name="testReadClustalFile" time="0.012" classname="compbio.data.sequence.ClustalAlignmentUtilTester"/>
16 <testcase name="testReadClustalFileLongNames" time="0.019" classname="compbio.data.sequence.ClustalAlignmentUtilTester"/>
17 <testcase name="testReadClustalFileShortNames" time="0.014" classname="compbio.data.sequence.ClustalAlignmentUtilTester"/>
18 <testcase name="test" time="0.018" classname="compbio.data.sequence.FastaReaderTester"/>
19 <testcase name="testProteinSequenceGeneration" time="0.0070" classname="compbio.data.sequence.FastaSequenceGeneratorTester"/>
20 <testcase name="testGetFormattedFasta" time="0.0" classname="compbio.data.sequence.FastaSequenceTester"/>
21 <testcase name="loadJronnFile" time="0.027" classname="compbio.data.sequence.SequenceUtilTester"/>
22 <testcase name="testCleanProteinSequence" time="0.0010" classname="compbio.data.sequence.SequenceUtilTester"/>
23 <testcase name="testCleanSequence" time="0.0" classname="compbio.data.sequence.SequenceUtilTester"/>
24 <testcase name="testDeepCleanSequence" time="0.0" classname="compbio.data.sequence.SequenceUtilTester"/>
25 <testcase name="testReadAAConResults" time="0.269" classname="compbio.data.sequence.SequenceUtilTester"/>
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27 <testcase name="testReadGlobPlotResults" time="0.104" classname="compbio.data.sequence.SequenceUtilTester"/>
28 <testcase name="testReadIUPredForGlobDomain" time="0.0060" classname="compbio.data.sequence.SequenceUtilTester"/>
29 <testcase name="testReadIUPredForShortAndLongDisorder" time="0.036" classname="compbio.data.sequence.SequenceUtilTester"/>
30 <testcase name="testReadWriteFasta" time="0.0080" classname="compbio.data.sequence.SequenceUtilTester"/>
31 <testcase name="testisNonAmbNucleotideSequence" time="0.0010" classname="compbio.data.sequence.SequenceUtilTester"/>
32 <testcase name="testisProteinSequence" time="0.0" classname="compbio.data.sequence.SequenceUtilTester"/>
33 <testcase name="testGetAsyncEngine" time="0.012" classname="compbio.engine.EngineConfiguratorTester"/>
34 <testcase name="testGetSyncEngine" time="0.0010" classname="compbio.engine.EngineConfiguratorTester"/>
35 <testcase name="testGetDelay" time="0.0" classname="compbio.engine.FilePullerTester"/>
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37 <testcase name="testLoadBalance" time="0.057" classname="compbio.engine.LoadBalancerTester"/>
38 <testcase name="test" time="5.011" classname="compbio.engine.PulledFileCacheTester"/>
39 <testcase name="testCommandBuilding" time="0.0010" classname="compbio.engine.client.CommandBuilderTester"/>
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51 <testcase name="testQueue" time="0.0" classname="compbio.engine.cluster.dundee._QueueTester"/>
52 <testcase name="testGetDirectory" time="0.104" classname="compbio.engine.conf.DirectoryManagerTester"/>
53 <testcase name="testGetDirectory" time="0.101" classname="compbio.engine.conf.DirectoryManagerTester"/>
54 <testcase name="testGetDirectory" time="0.098" classname="compbio.engine.conf.DirectoryManagerTester"/>
55 <testcase name="testGetDirectory" time="0.097" classname="compbio.engine.conf.DirectoryManagerTester"/>
56 <testcase name="testClusterEngineConf" time="0.0010" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
57 <testcase name="validateClustalConfiguration" time="0.0" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
58 <testcase name="validateMafftConfiguration" time="0.0020" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
59 <testcase name="validateMuscleConfiguration" time="0.0" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
60 <testcase name="validateTcoffeeConfiguration" time="0.0" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
61 <testcase name="testMarshalling" time="0.0040" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
62 <testcase name="testSchemaFromCodeGeneration" time="0.13" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
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81 <testcase name="testCancelCompletedTaskLocally" time="0.049" classname="compbio.engine.local.LocalRunnerTester"/>
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84 <testcase name="testgetAllOptions" time="0.0010" classname="compbio.metadata.OptionCombinatorTester"/>
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91 <testcase name="testCreateNumParameterWithoutValidValue" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
92 <testcase name="testCreateParameter" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
93 <testcase name="testCreateParameterWithValidValueConstrain" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
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96 <testcase name="testOptionToCommand" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
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99 <testcase name="testValidateBoundaryConstrainCheck" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
100 <testcase name="testValidateLowerBoundaryConstrainCheck" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
101 <testcase name="testValidateUpperBoundaryConstrainCheck" time="0.0010" classname="compbio.metadata.RunnerConfigTester"/>
102 <testcase name="testValidateValueConstrain" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
103 <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.MclTester"/>
104 <testcase name="testGetTestCommand" time="0.0010" classname="compbio.runner._impl.NetNglycTester"/>
105 <testcase name="testGetTestArgsCommand" time="0.0" classname="compbio.runner._impl.OBTester"/>
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107 <testcase name="testGetTestArgsCommand" time="0.0" classname="compbio.runner._impl.RPSBlastTester"/>
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109 <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.RonnTester"/>
110 <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.Tmhmm2Tester"/>
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219 <testcase name="testGetStats" time="0.022" classname="compbio.stat.servlet.util.StatCollectionTester"/>