1 <?xml version="1.0" encoding="UTF-8"?>
2 <testsuite name="Ant test" failures="0" tests="165" time="524.407" errors="0">
4 <testcase name="testPull" time="0.45" classname="compbio.engine.FilePullerTester"/>
5 <testcase name="testCache" time="6.006" classname="compbio.engine.FilePullerTester"/>
6 <testcase name="testArguments" time="3.518" classname="compbio.runner.msa.ClustalWParametersTester"/>
7 <testcase name="testConfiguration" time="0.0010" classname="compbio.runner.msa.ClustalWParametersTester"/>
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9 <testcase name="testConstrainedParametersMinValues" time="1.232" classname="compbio.runner.msa.ClustalWParametersTester"/>
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15 <testcase name="testReadClustalFile" time="0.022" classname="compbio.data.sequence.ClustalAlignmentUtilTester"/>
16 <testcase name="testReadClustalFileLongNames" time="0.052" classname="compbio.data.sequence.ClustalAlignmentUtilTester"/>
17 <testcase name="testReadClustalFileShortNames" time="0.054" classname="compbio.data.sequence.ClustalAlignmentUtilTester"/>
18 <testcase name="testProteinSequenceGeneration" time="0.0080" classname="compbio.data.sequence.FastaSequenceGeneratorTester"/>
19 <testcase name="testGetFormattedFasta" time="0.0" classname="compbio.data.sequence.FastaSequenceTester"/>
20 <testcase name="testCleanSequence" time="0.0" classname="compbio.data.sequence.SequenceUtilTester"/>
21 <testcase name="testDeepCleanSequence" time="0.0" classname="compbio.data.sequence.SequenceUtilTester"/>
22 <testcase name="testReadWriteFasta" time="0.016" classname="compbio.data.sequence.SequenceUtilTester"/>
23 <testcase name="testisNonAmbNucleotideSequence" time="0.0" classname="compbio.data.sequence.SequenceUtilTester"/>
24 <testcase name="testisProteinSequence" time="0.0" classname="compbio.data.sequence.SequenceUtilTester"/>
25 <testcase name="testGetAsyncEngine" time="0.296" classname="compbio.engine.EngineConfiguratorTester"/>
26 <testcase name="testGetSyncEngine" time="0.0" classname="compbio.engine.EngineConfiguratorTester"/>
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29 <testcase name="test" time="5.187" classname="compbio.engine.PulledFileCacheTester"/>
30 <testcase name="testCommandBuilding" time="0.0010" classname="compbio.engine.client.CommandBuilderTester"/>
31 <testcase name="testOptionsToCommand" time="0.567" classname="compbio.engine.client.CommandBuilderTester"/>
32 <testcase name="testSpaceDelimiterExecutable" time="0.0" classname="compbio.engine.client.CommandBuilderTester"/>
33 <testcase name="testGetClassPath" time="0.234" classname="compbio.engine.client.PathValidatorTester"/>
34 <testcase name="testIsAbsolutePath" time="0.0" classname="compbio.engine.client.PathValidatorTester"/>
35 <testcase name="testTaskList" time="8.964" classname="compbio.engine.cluster.drmaa.ClusterSessionTester"/>
36 <testcase name="testCancel" time="1.273" classname="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
37 <testcase name="testGetJobStatus" time="20.778" classname="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
38 <testcase name="testSubmit" time="18.714" classname="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
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42 <testcase name="testQueue" time="0.0" classname="compbio.engine.cluster.dundee._QueueTester"/>
43 <testcase name="testGetDirectory" time="0.1" classname="compbio.engine.conf.DirectoryManagerTester"/>
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45 <testcase name="testGetDirectory" time="0.11" classname="compbio.engine.conf.DirectoryManagerTester"/>
46 <testcase name="testGetDirectory" time="0.103" classname="compbio.engine.conf.DirectoryManagerTester"/>
47 <testcase name="testClusterEngineConf" time="0.104" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
48 <testcase name="validateClustalConfiguration" time="0.043" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
49 <testcase name="validateMafftConfiguration" time="0.0010" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
50 <testcase name="validateMuscleConfiguration" time="0.0040" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
51 <testcase name="validateTcoffeeConfiguration" time="0.0040" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
52 <testcase name="testMarshalling" time="0.02" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
53 <testcase name="testSchemaFromCodeGeneration" time="0.504" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
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57 <testcase name="testAsyncCancelOperation" time="0.048" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
58 <testcase name="testAsyncRetrievOperation" time="0.56" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
59 <testcase name="testCancelCompletedTaskLocally" time="3.053" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
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61 <testcase name="testGetStatus" time="20.872" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
62 <testcase name="testGetStatus" time="20.915" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
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65 <testcase name="testGetStatus" time="20.863" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
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75 <testcase name="testgetAllOptions" time="0.0010" classname="compbio.metadata.OptionCombinatorTester"/>
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80 <testcase name="validatePresets" time="0.0010" classname="compbio.metadata.PresetTester"/>
81 <testcase name="testCreateNumParameterWithoutValidValue" time="0.0010" classname="compbio.metadata.RunnerConfigTester"/>
82 <testcase name="testCreateParameter" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
83 <testcase name="testCreateParameterWithValidValueConstrain" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
84 <testcase name="testOptionNoDefaultValidate" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
85 <testcase name="testOptionSetInvalidValue" time="0.0010" classname="compbio.metadata.RunnerConfigTester"/>
86 <testcase name="testOptionToCommand" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
87 <testcase name="testParameterToCommand" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
88 <testcase name="testValidate" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
89 <testcase name="testValidateBoundaryConstrainCheck" time="0.0010" classname="compbio.metadata.RunnerConfigTester"/>
90 <testcase name="testValidateLowerBoundaryConstrainCheck" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
91 <testcase name="testValidateUpperBoundaryConstrainCheck" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
92 <testcase name="testValidateValueConstrain" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
93 <testcase name="testGetTestCommand" time="0.0010" classname="compbio.runner._impl.MclTester"/>
94 <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.NetNglycTester"/>
95 <testcase name="testGetTestArgsCommand" time="0.0" classname="compbio.runner._impl.OBTester"/>
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97 <testcase name="testGetTestArgsCommand" time="0.0" classname="compbio.runner._impl.RPSBlastTester"/>
98 <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.RPSBlastTester"/>
99 <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.RonnTester"/>
100 <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.Tmhmm2Tester"/>
101 <testcase name="readStatistics" time="1.178" classname="compbio.runner.msa.ClustalWTester"/>
102 <testcase name="readStatisticsClusterExecution" time="8.121" classname="compbio.runner.msa.ClustalWTester"/>
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106 <testcase name="testRunLocally" time="0.171" classname="compbio.runner.msa.ClustalWTester"/>
107 <testcase name="testRunOnCluster" time="15.937" classname="compbio.runner.msa.ClustalWTester"/>
108 <testcase name="testRunWithMatrix" time="0.824" classname="compbio.runner.msa.ClustalWTester"/>
109 <testcase name="testLoadLimits" time="0.0" classname="compbio.runner.msa.LimitTester"/>
110 <testcase name="testArguments" time="6.103" classname="compbio.runner.msa.MafftParametersTester"/>
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