7 <td>compbio.engine.client.CommandBuilderTester</td>
8 <td> </td><td> </td></tr>
10 <td align='center' colspan='3'>@Test</td>
14 <td>testOptionsToCommand</td>
18 <td>testSpaceDelimiterExecutable</td>
22 <td>testCommandBuilding</td>
25 <td align='center' colspan='3'>@BeforeClass</td>
28 <td align='center' colspan='3'>@BeforeMethod</td>
31 <td align='center' colspan='3'>@AfterMethod</td>
34 <td align='center' colspan='3'>@AfterClass</td>
37 <td>compbio.runner._impl.NetNglycTester</td>
38 <td> </td><td> </td></tr>
40 <td align='center' colspan='3'>@Test</td>
44 <td>testBuildCommand</td>
45 <td>cluster runner </td>
49 <td>testGetTestCommand</td>
52 <td align='center' colspan='3'>@BeforeClass</td>
55 <td align='center' colspan='3'>@BeforeMethod</td>
58 <td align='center' colspan='3'>@AfterMethod</td>
61 <td align='center' colspan='3'>@AfterClass</td>
64 <td>compbio.engine.EngineConfiguratorTester</td>
65 <td> </td><td> </td></tr>
67 <td align='center' colspan='3'>@Test</td>
71 <td>testGetAsyncEngine</td>
75 <td>testGetSyncEngine</td>
78 <td align='center' colspan='3'>@BeforeClass</td>
81 <td align='center' colspan='3'>@BeforeMethod</td>
84 <td align='center' colspan='3'>@AfterMethod</td>
87 <td align='center' colspan='3'>@AfterClass</td>
90 <td>compbio.runner.disorder.GlobPlotTester</td>
91 <td> </td><td> </td></tr>
93 <td align='center' colspan='3'>@Test</td>
97 <td>testRunOnCluster</td>
98 <td>cluster runner </td>
102 <td>testPersistance</td>
107 <td>testRunOnClusterAsync</td>
108 <td>cluster runner </td>
112 <td>testConfigurationLoading</td>
117 <td>readStatistics</td>
122 <td>testRunLocally</td>
126 <td align='center' colspan='3'>@BeforeClass</td>
129 <td align='center' colspan='3'>@BeforeMethod</td>
136 <td align='center' colspan='3'>@AfterMethod</td>
139 <td align='center' colspan='3'>@AfterClass</td>
142 <td>compbio.stat.collector.ExecutionStatCollectorTester</td>
143 <td> </td><td> </td></tr>
145 <td align='center' colspan='3'>@Test</td>
149 <td>testHasCompleted</td>
153 <td>testHasTimedOut</td>
157 <td>testCollectStat</td>
161 <td>testUpdateStatTester</td>
164 <td align='center' colspan='3'>@BeforeClass</td>
167 <td align='center' colspan='3'>@BeforeMethod</td>
170 <td align='center' colspan='3'>@AfterMethod</td>
173 <td align='center' colspan='3'>@AfterClass</td>
176 <td>compbio.engine.local.AsyncLocalRunnerTester</td>
177 <td> </td><td> </td></tr>
179 <td align='center' colspan='3'>@Test</td>
183 <td>testCancelLocally</td>
188 <td>testMultipleCancelLocally</td>
193 <td>testAsyncCancelOperation</td>
198 <td>testAsyncRetrievOperation</td>
203 <td>testSubmitLocally</td>
208 <td>testCancelCompletedTaskLocally</td>
213 <td>testGetStatus</td>
217 <td align='center' colspan='3'>@BeforeClass</td>
220 <td align='center' colspan='3'>@BeforeMethod</td>
223 <td align='center' colspan='3'>@AfterMethod</td>
226 <td align='center' colspan='3'>@AfterClass</td>
229 <td>compbio.runner.msa.MafftTester</td>
230 <td> </td><td> </td></tr>
232 <td align='center' colspan='3'>@Test</td>
237 <td>runner non_windows </td>
241 <td>testRunOnClusterAsyncCheckStatusShortPoolingTime</td>
242 <td>cluster runner non_windows </td>
246 <td>testPersistance</td>
247 <td>runner non_windows </td>
251 <td>testClusterExecute</td>
252 <td>cluster runner non_windows </td>
256 <td>testSetInputTester</td>
257 <td>runner non_windows </td>
261 <td>testConfigurationLoading</td>
266 <td>readStatistics</td>
267 <td>runner non_windows </td>
271 <td>testRunOnClusterAsyncCheckStatusLongPoolingTime</td>
272 <td>cluster runner non_windows </td>
275 <td align='center' colspan='3'>@BeforeClass</td>
278 <td align='center' colspan='3'>@BeforeMethod</td>
283 <td>cluster runner non_windows </td>
286 <td align='center' colspan='3'>@AfterMethod</td>
289 <td align='center' colspan='3'>@AfterClass</td>
292 <td>compbio.data.sequence.ClustalAlignmentUtilTester</td>
293 <td> </td><td> </td></tr>
295 <td align='center' colspan='3'>@Test</td>
299 <td>testReadClustalFile</td>
303 <td>testReadClustalFileLongNames</td>
307 <td>testReadClustalFileShortNames</td>
310 <td align='center' colspan='3'>@BeforeClass</td>
313 <td align='center' colspan='3'>@BeforeMethod</td>
316 <td align='center' colspan='3'>@AfterMethod</td>
319 <td align='center' colspan='3'>@AfterClass</td>
322 <td>compbio.runner.disorder.IUPredTester</td>
323 <td> </td><td> </td></tr>
325 <td align='center' colspan='3'>@Test</td>
329 <td>testRunOnCluster</td>
330 <td>cluster runner </td>
334 <td>testReadResults</td>
339 <td>testPersistance</td>
344 <td>testRunOnClusterAsync</td>
345 <td>cluster runner </td>
349 <td>testSetParameter</td>
354 <td>testConfigurationLoading</td>
359 <td>testRunLocally</td>
364 <td>testRunLocallyWithParams</td>
368 <td align='center' colspan='3'>@BeforeClass</td>
371 <td align='center' colspan='3'>@BeforeMethod</td>
378 <td align='center' colspan='3'>@AfterMethod</td>
381 <td align='center' colspan='3'>@AfterClass</td>
384 <td>compbio.engine.client.PathValidatorTester</td>
385 <td> </td><td> </td></tr>
387 <td align='center' colspan='3'>@Test</td>
391 <td>testIsAbsolutePath</td>
395 <td>testGetClassPath</td>
398 <td align='center' colspan='3'>@BeforeClass</td>
401 <td align='center' colspan='3'>@BeforeMethod</td>
404 <td align='center' colspan='3'>@AfterMethod</td>
407 <td align='center' colspan='3'>@AfterClass</td>
410 <td>compbio.stat.collector.StatDBTester</td>
411 <td> </td><td> </td></tr>
413 <td align='center' colspan='3'>@Test</td>
417 <td>testReadOneMonthData</td>
421 <td>testVerifyJobsCount</td>
425 <td>testReadYearData</td>
429 <td>testGetEarliestRecord</td>
432 <td align='center' colspan='3'>@BeforeClass</td>
439 <td align='center' colspan='3'>@BeforeMethod</td>
442 <td align='center' colspan='3'>@AfterMethod</td>
445 <td align='center' colspan='3'>@AfterClass</td>
448 <td>compbio.stat.servlet.util.StatCollectionTester</td>
449 <td> </td><td> </td></tr>
451 <td align='center' colspan='3'>@Test</td>
455 <td>testGetStats</td>
458 <td align='center' colspan='3'>@BeforeClass</td>
461 <td align='center' colspan='3'>@BeforeMethod</td>
464 <td align='center' colspan='3'>@AfterMethod</td>
467 <td align='center' colspan='3'>@AfterClass</td>
470 <td>compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester</td>
471 <td> </td><td> </td></tr>
473 <td align='center' colspan='3'>@Test</td>
478 <td>engine cluster </td>
483 <td>engine cluster </td>
487 <td>testGetJobStatus</td>
488 <td>engine cluster </td>
491 <td align='center' colspan='3'>@BeforeClass</td>
494 <td align='center' colspan='3'>@BeforeMethod</td>
497 <td align='center' colspan='3'>@AfterMethod</td>
500 <td align='center' colspan='3'>@AfterClass</td>
503 <td>compbio.engine.cluster.drmaa.DrmaaClusterEngineTester</td>
504 <td> </td><td> </td></tr>
506 <td align='center' colspan='3'>@Test</td>
511 <td>engine cluster </td>
516 <td>engine cluster </td>
519 <td align='center' colspan='3'>@BeforeClass</td>
522 <td align='center' colspan='3'>@BeforeMethod</td>
525 <td align='center' colspan='3'>@AfterMethod</td>
528 <td align='center' colspan='3'>@AfterClass</td>
531 <td>compbio.runner.conservation.AAConTester</td>
532 <td> </td><td> </td></tr>
534 <td align='center' colspan='3'>@Test</td>
538 <td>testRunOnCluster</td>
543 <td>testRunLocallyWithPreset</td>
548 <td>testPersistance</td>
553 <td>testRunOnClusterAsync</td>
554 <td>cluster runner </td>
558 <td>testRunLocallyOnTwoCpu</td>
563 <td>testConfigurationLoading</td>
568 <td>readStatistics</td>
573 <td>testRunLocally</td>
577 <td align='center' colspan='3'>@BeforeClass</td>
580 <td align='center' colspan='3'>@BeforeMethod</td>
587 <td align='center' colspan='3'>@AfterMethod</td>
590 <td align='center' colspan='3'>@AfterClass</td>
593 <td>compbio.runner._impl.RPSBlastTester</td>
594 <td> </td><td> </td></tr>
596 <td align='center' colspan='3'>@Test</td>
600 <td>testBuildCommand</td>
601 <td>cluster runner </td>
605 <td>testGetTestCommand</td>
609 <td>testGetTestArgsCommand</td>
612 <td align='center' colspan='3'>@BeforeClass</td>
615 <td align='center' colspan='3'>@BeforeMethod</td>
618 <td align='center' colspan='3'>@AfterMethod</td>
621 <td align='center' colspan='3'>@AfterClass</td>
624 <td>compbio.engine.PulledFileCacheTester</td>
625 <td> </td><td> </td></tr>
627 <td align='center' colspan='3'>@Test</td>
634 <td align='center' colspan='3'>@BeforeClass</td>
637 <td align='center' colspan='3'>@BeforeMethod</td>
640 <td align='center' colspan='3'>@AfterMethod</td>
643 <td align='center' colspan='3'>@AfterClass</td>
646 <td>compbio.runner.disorder.DisemblTester</td>
647 <td> </td><td> </td></tr>
649 <td align='center' colspan='3'>@Test</td>
653 <td>testRunOnCluster</td>
654 <td>cluster runner </td>
658 <td>testPersistance</td>
663 <td>testRunOnClusterAsync</td>
664 <td>cluster runner </td>
668 <td>testConfigurationLoading</td>
673 <td>readStatistics</td>
678 <td>testRunLocally</td>
682 <td align='center' colspan='3'>@BeforeClass</td>
685 <td align='center' colspan='3'>@BeforeMethod</td>
692 <td align='center' colspan='3'>@AfterMethod</td>
695 <td align='center' colspan='3'>@AfterClass</td>
698 <td>compbio.runner._impl.MclTester</td>
699 <td> </td><td> </td></tr>
701 <td align='center' colspan='3'>@Test</td>
705 <td>testBuildCommand</td>
706 <td>cluster runner </td>
710 <td>testGetTestCommand</td>
713 <td align='center' colspan='3'>@BeforeClass</td>
716 <td align='center' colspan='3'>@BeforeMethod</td>
719 <td align='center' colspan='3'>@AfterMethod</td>
722 <td align='center' colspan='3'>@AfterClass</td>
725 <td>compbio.engine.cluster.dundee._QueueTester</td>
726 <td> </td><td> </td></tr>
728 <td align='center' colspan='3'>@Test</td>
735 <td align='center' colspan='3'>@BeforeClass</td>
738 <td align='center' colspan='3'>@BeforeMethod</td>
741 <td align='center' colspan='3'>@AfterMethod</td>
744 <td align='center' colspan='3'>@AfterClass</td>
747 <td>compbio.engine.LoadBalancerTester</td>
748 <td> </td><td> </td></tr>
750 <td align='center' colspan='3'>@Test</td>
754 <td>testLoadBalance</td>
757 <td align='center' colspan='3'>@BeforeClass</td>
760 <td align='center' colspan='3'>@BeforeMethod</td>
763 <td align='center' colspan='3'>@AfterMethod</td>
766 <td align='center' colspan='3'>@AfterClass</td>
769 <td>compbio.runner.msa.ProbconsParametersTester</td>
770 <td> </td><td> </td></tr>
772 <td align='center' colspan='3'>@Test</td>
776 <td>testConstrainedParametersMaxValues</td>
777 <td>runner non_windows </td>
781 <td>testConstrainedParametersRandomValues</td>
782 <td>runner non_windows </td>
786 <td>testConstrainedParametersMinValues</td>
787 <td>runner non_windows </td>
791 <td>testArguments</td>
792 <td>runner non_windows </td>
797 <td>runner non_windows </td>
801 <td>testDefaultParameters</td>
802 <td>runner non_windows </td>
806 <td>testParameters</td>
807 <td>runner non_windows </td>
811 <td>testConfiguration</td>
814 <td align='center' colspan='3'>@BeforeClass</td>
817 <td align='center' colspan='3'>@BeforeMethod</td>
822 <td>runner non_windows </td>
825 <td align='center' colspan='3'>@AfterMethod</td>
828 <td align='center' colspan='3'>@AfterClass</td>
831 <td>compbio.metadata.RunnerConfigTester</td>
832 <td> </td><td> </td></tr>
834 <td align='center' colspan='3'>@Test</td>
838 <td>testValidateUpperBoundaryConstrainCheck</td>
842 <td>testOptionSetInvalidValue</td>
846 <td>testValidateBoundaryConstrainCheck</td>
850 <td>testValidateValueConstrain</td>
854 <td>testCreateParameterWithValidValueConstrain</td>
858 <td>testValidateLowerBoundaryConstrainCheck</td>
862 <td>testOptionNoDefaultValidate</td>
866 <td>testCreateParameter</td>
870 <td>testOptionToCommand</td>
874 <td>testParameterToCommand</td>
878 <td>testCreateNumParameterWithoutValidValue</td>
882 <td>testValidate</td>
885 <td align='center' colspan='3'>@BeforeClass</td>
888 <td align='center' colspan='3'>@BeforeMethod</td>
895 <td align='center' colspan='3'>@AfterMethod</td>
898 <td align='center' colspan='3'>@AfterClass</td>
901 <td>compbio.runner.disorder.JronnTester</td>
902 <td> </td><td> </td></tr>
904 <td align='center' colspan='3'>@Test</td>
908 <td>testRunOnCluster</td>
909 <td>cluster runner </td>
913 <td>testPersistance</td>
918 <td>testRunOnClusterAsync</td>
919 <td>cluster runner </td>
923 <td>testRunLocallyOnTwoCpu</td>
928 <td>testConfigurationLoading</td>
933 <td>readStatistics</td>
938 <td>testRunLocally</td>
942 <td align='center' colspan='3'>@BeforeClass</td>
945 <td align='center' colspan='3'>@BeforeMethod</td>
952 <td align='center' colspan='3'>@AfterMethod</td>
955 <td align='center' colspan='3'>@AfterClass</td>
958 <td>compbio.runner.msa.MafftParametersTester</td>
959 <td> </td><td> </td></tr>
961 <td align='center' colspan='3'>@Test</td>
965 <td>testConstrainedParametersMaxValues</td>
966 <td>runner non_windows </td>
970 <td>testConstrainedParametersRandomValues</td>
971 <td>runner non_windows </td>
975 <td>testConstrainedParametersMinValues</td>
976 <td>runner non_windows </td>
980 <td>testArguments</td>
981 <td>runner non_windows </td>
986 <td>runner non_windows </td>
990 <td>testDefaultParameters</td>
991 <td>runner non_windows </td>
995 <td>testParameters</td>
996 <td>runner non_windows </td>
1000 <td>testPresets</td>
1001 <td>runner non_windows </td>
1005 <td>testConfiguration</td>
1006 <td> </td></tr>
1008 <td align='center' colspan='3'>@BeforeClass</td>
1011 <td align='center' colspan='3'>@BeforeMethod</td>
1016 <td>runner non_windows </td>
1019 <td align='center' colspan='3'>@AfterMethod</td>
1022 <td align='center' colspan='3'>@AfterClass</td>
1025 <td>compbio.runner._impl.RonnTester</td>
1026 <td> </td><td> </td></tr>
1028 <td align='center' colspan='3'>@Test</td>
1032 <td>testBuildCommand</td>
1033 <td>cluster runner </td>
1037 <td>testGetTestCommand</td>
1038 <td> </td></tr>
1040 <td align='center' colspan='3'>@BeforeClass</td>
1043 <td align='center' colspan='3'>@BeforeMethod</td>
1046 <td align='center' colspan='3'>@AfterMethod</td>
1049 <td align='center' colspan='3'>@AfterClass</td>
1052 <td>compbio.runner.msa.ProbconsTester</td>
1053 <td> </td><td> </td></tr>
1055 <td align='center' colspan='3'>@Test</td>
1059 <td>testExecute</td>
1060 <td>runner non_windows </td>
1064 <td>testPersistance</td>
1065 <td>runner non_windows </td>
1069 <td>testClusterExecute</td>
1070 <td>cluster runner non_windows </td>
1074 <td>testSetInputTester</td>
1075 <td>runner non_windows </td>
1079 <td>testConfigurationLoading</td>
1084 <td>readStatistics</td>
1085 <td>runner non_windows </td>
1088 <td align='center' colspan='3'>@BeforeClass</td>
1091 <td align='center' colspan='3'>@BeforeMethod</td>
1096 <td>cluster runner non_windows </td>
1099 <td align='center' colspan='3'>@AfterMethod</td>
1102 <td align='center' colspan='3'>@AfterClass</td>
1105 <td>compbio.engine.conf.PropertyHelperManagerTester</td>
1106 <td> </td><td> </td></tr>
1108 <td align='center' colspan='3'>@Test</td>
1112 <td>testClusterEngineConf</td>
1117 <td>validateClustalConfiguration</td>
1118 <td> </td></tr>
1121 <td>validateTcoffeeConfiguration</td>
1122 <td> </td></tr>
1125 <td>validateMuscleConfiguration</td>
1126 <td> </td></tr>
1129 <td>validateMafftConfiguration</td>
1130 <td> </td></tr>
1132 <td align='center' colspan='3'>@BeforeClass</td>
1136 <td>testLoadResources</td>
1137 <td> </td></tr>
1139 <td align='center' colspan='3'>@BeforeMethod</td>
1142 <td align='center' colspan='3'>@AfterMethod</td>
1145 <td align='center' colspan='3'>@AfterClass</td>
1148 <td>compbio.metadata.OptionCombinatorTester</td>
1149 <td> </td><td> </td></tr>
1151 <td align='center' colspan='3'>@Test</td>
1155 <td>testgetAllParameters</td>
1156 <td> </td></tr>
1159 <td>testgetAllOptions</td>
1160 <td> </td></tr>
1162 <td align='center' colspan='3'>@BeforeClass</td>
1165 <td align='center' colspan='3'>@BeforeMethod</td>
1170 <td> </td></tr>
1172 <td align='center' colspan='3'>@AfterMethod</td>
1175 <td align='center' colspan='3'>@AfterClass</td>
1178 <td>compbio.engine.FilePullerTester</td>
1179 <td> </td><td> </td></tr>
1181 <td align='center' colspan='3'>@Test</td>
1186 <td> </td></tr>
1194 <td>testGetDelay</td>
1203 <td align='center' colspan='3'>@BeforeClass</td>
1206 <td align='center' colspan='3'>@BeforeMethod</td>
1209 <td align='center' colspan='3'>@AfterMethod</td>
1212 <td align='center' colspan='3'>@AfterClass</td>
1215 <td>compbio.runner.msa.MuscleTester</td>
1216 <td> </td><td> </td></tr>
1218 <td align='center' colspan='3'>@Test</td>
1222 <td>testRunOnCluster</td>
1223 <td>cluster runner </td>
1227 <td>testPersistance</td>
1232 <td>testRunOnClusterAsync</td>
1233 <td>cluster runner </td>
1237 <td>testConfigurationLoading</td>
1242 <td>readStatistics</td>
1247 <td>testRunLocally</td>
1251 <td align='center' colspan='3'>@BeforeClass</td>
1254 <td align='center' colspan='3'>@BeforeMethod</td>
1259 <td> </td></tr>
1261 <td align='center' colspan='3'>@AfterMethod</td>
1264 <td align='center' colspan='3'>@AfterClass</td>
1267 <td>compbio.runner.msa.TcoffeeTester</td>
1268 <td> </td><td> </td></tr>
1270 <td align='center' colspan='3'>@Test</td>
1274 <td>testExecute</td>
1275 <td>runner non_windows </td>
1279 <td>testPersistance</td>
1280 <td>cluster runner non_windows </td>
1285 <td>runner non_windows </td>
1289 <td>testClusterExecute</td>
1290 <td>cluster runner non_windows </td>
1294 <td>testConfigurationLoading</td>
1299 <td>readStatistics</td>
1300 <td>runner non_windows </td>
1303 <td align='center' colspan='3'>@BeforeClass</td>
1306 <td align='center' colspan='3'>@BeforeMethod</td>
1311 <td>cluster runner non_windows </td>
1314 <td align='center' colspan='3'>@AfterMethod</td>
1317 <td align='center' colspan='3'>@AfterClass</td>
1320 <td>compbio.runner._impl.OBTester</td>
1321 <td> </td><td> </td></tr>
1323 <td align='center' colspan='3'>@Test</td>
1327 <td>testBuildCommand</td>
1328 <td>cluster runner </td>
1332 <td>testGetTestCommand</td>
1333 <td> </td></tr>
1336 <td>testGetTestArgsCommand</td>
1337 <td> </td></tr>
1339 <td align='center' colspan='3'>@BeforeClass</td>
1342 <td align='center' colspan='3'>@BeforeMethod</td>
1345 <td align='center' colspan='3'>@AfterMethod</td>
1348 <td align='center' colspan='3'>@AfterClass</td>
1351 <td>compbio.runner.msa.LimitTester</td>
1352 <td> </td><td> </td></tr>
1354 <td align='center' colspan='3'>@Test</td>
1358 <td>testLimitExceeded</td>
1359 <td> </td></tr>
1362 <td>testLoadLimits</td>
1363 <td> </td></tr>
1365 <td align='center' colspan='3'>@BeforeClass</td>
1368 <td align='center' colspan='3'>@BeforeMethod</td>
1376 <td align='center' colspan='3'>@AfterMethod</td>
1379 <td align='center' colspan='3'>@AfterClass</td>
1382 <td>compbio.engine.local.LocalRunnerTester</td>
1383 <td> </td><td> </td></tr>
1385 <td align='center' colspan='3'>@Test</td>
1389 <td>testCancelLocally</td>
1394 <td>testMultipleCancelLocally</td>
1399 <td>testCancelCompletedTaskLocally</td>
1403 <td align='center' colspan='3'>@BeforeClass</td>
1406 <td align='center' colspan='3'>@BeforeMethod</td>
1409 <td align='center' colspan='3'>@AfterMethod</td>
1412 <td align='center' colspan='3'>@AfterClass</td>
1415 <td>compbio.runner._impl.Tmhmm2Tester</td>
1416 <td> </td><td> </td></tr>
1418 <td align='center' colspan='3'>@Test</td>
1422 <td>testBuildCommand</td>
1423 <td>cluster runner </td>
1427 <td>testGetTestCommand</td>
1428 <td> </td></tr>
1430 <td align='center' colspan='3'>@BeforeClass</td>
1433 <td align='center' colspan='3'>@BeforeMethod</td>
1436 <td align='center' colspan='3'>@AfterMethod</td>
1439 <td align='center' colspan='3'>@AfterClass</td>
1442 <td>compbio.runner.msa.MuscleParametersTester</td>
1443 <td> </td><td> </td></tr>
1445 <td align='center' colspan='3'>@Test</td>
1449 <td>testConstrainedParametersMaxValues</td>
1454 <td>testConstrainedParametersRandomValues</td>
1459 <td>testConstrainedParametersMinValues</td>
1464 <td>testArguments</td>
1469 <td>testOptions</td>
1474 <td>testDefaultParameters</td>
1479 <td>testParameters</td>
1484 <td>testPresets</td>
1489 <td>testConfiguration</td>
1490 <td> </td></tr>
1492 <td align='center' colspan='3'>@BeforeClass</td>
1495 <td align='center' colspan='3'>@BeforeMethod</td>
1503 <td align='center' colspan='3'>@AfterMethod</td>
1506 <td align='center' colspan='3'>@AfterClass</td>
1509 <td>compbio.data.sequence.FastaSequenceGeneratorTester</td>
1510 <td> </td><td> </td></tr>
1512 <td align='center' colspan='3'>@Test</td>
1516 <td>testProteinSequenceGeneration</td>
1517 <td> </td></tr>
1519 <td align='center' colspan='3'>@BeforeClass</td>
1522 <td align='center' colspan='3'>@BeforeMethod</td>
1525 <td align='center' colspan='3'>@AfterMethod</td>
1528 <td align='center' colspan='3'>@AfterClass</td>
1531 <td>compbio.engine.cluster.drmaa.ClusterSessionTester</td>
1532 <td> </td><td> </td></tr>
1534 <td align='center' colspan='3'>@Test</td>
1538 <td>testTaskList</td>
1539 <td>engine cluster </td>
1542 <td align='center' colspan='3'>@BeforeClass</td>
1545 <td align='center' colspan='3'>@BeforeMethod</td>
1548 <td align='center' colspan='3'>@AfterMethod</td>
1551 <td align='center' colspan='3'>@AfterClass</td>
1554 <td>compbio.data.sequence.FastaReaderTester</td>
1555 <td> </td><td> </td></tr>
1557 <td align='center' colspan='3'>@Test</td>
1562 <td> </td></tr>
1564 <td align='center' colspan='3'>@BeforeClass</td>
1567 <td align='center' colspan='3'>@BeforeMethod</td>
1570 <td align='center' colspan='3'>@AfterMethod</td>
1573 <td align='center' colspan='3'>@AfterClass</td>
1576 <td>compbio.data.sequence.FastaSequenceTester</td>
1577 <td> </td><td> </td></tr>
1579 <td align='center' colspan='3'>@Test</td>
1583 <td>testGetFormattedFasta</td>
1584 <td> </td></tr>
1586 <td align='center' colspan='3'>@BeforeClass</td>
1589 <td align='center' colspan='3'>@BeforeMethod</td>
1592 <td align='center' colspan='3'>@AfterMethod</td>
1595 <td align='center' colspan='3'>@AfterClass</td>
1598 <td>compbio.data.sequence.SequenceUtilTester</td>
1599 <td> </td><td> </td></tr>
1601 <td align='center' colspan='3'>@Test</td>
1605 <td>testReadIUPredForGlobDomain</td>
1606 <td> </td></tr>
1609 <td>testDeepCleanSequence</td>
1610 <td> </td></tr>
1613 <td>testReadIUPredForShortAndLongDisorder</td>
1614 <td> </td></tr>
1617 <td>testCleanProteinSequence</td>
1618 <td> </td></tr>
1621 <td>testReadWriteFasta</td>
1622 <td> </td></tr>
1625 <td>testReadAAConResults</td>
1626 <td> </td></tr>
1629 <td>testReadGlobPlotResults</td>
1630 <td> </td></tr>
1633 <td>testReadDisemblResults</td>
1634 <td> </td></tr>
1637 <td>loadJronnFile</td>
1638 <td> </td></tr>
1641 <td>testisNonAmbNucleotideSequence</td>
1642 <td> </td></tr>
1645 <td>testisProteinSequence</td>
1646 <td> </td></tr>
1649 <td>testCleanSequence</td>
1650 <td> </td></tr>
1652 <td align='center' colspan='3'>@BeforeClass</td>
1655 <td align='center' colspan='3'>@BeforeMethod</td>
1658 <td align='center' colspan='3'>@AfterMethod</td>
1661 <td align='center' colspan='3'>@AfterClass</td>
1664 <td>compbio.runner.msa.TcoffeeParametersTester</td>
1665 <td> </td><td> </td></tr>
1667 <td align='center' colspan='3'>@Test</td>
1671 <td>testConstrainedParametersMaxValues</td>
1672 <td>runner non_windows </td>
1676 <td>testConstrainedParametersRandomValues</td>
1677 <td>runner non_windows </td>
1681 <td>testConstrainedParametersMinValues</td>
1682 <td>runner non_windows </td>
1686 <td>testArguments</td>
1687 <td>runner non_windows </td>
1691 <td>testOptions</td>
1692 <td>runner non_windows </td>
1696 <td>testDefaultParameters</td>
1697 <td>runner non_windows </td>
1701 <td>testParameters</td>
1702 <td>runner non_windows </td>
1706 <td>testPresets</td>
1707 <td>runner non_windows </td>
1711 <td>testConfiguration</td>
1712 <td> </td></tr>
1714 <td align='center' colspan='3'>@BeforeClass</td>
1717 <td align='center' colspan='3'>@BeforeMethod</td>
1722 <td>runner non_windows </td>
1725 <td align='center' colspan='3'>@AfterMethod</td>
1728 <td align='center' colspan='3'>@AfterClass</td>
1731 <td>compbio.engine.cluster.drmaa.UtilTester</td>
1732 <td> </td><td> </td></tr>
1734 <td align='center' colspan='3'>@Test</td>
1739 <td> </td></tr>
1741 <td align='center' colspan='3'>@BeforeClass</td>
1744 <td align='center' colspan='3'>@BeforeMethod</td>
1747 <td align='center' colspan='3'>@AfterMethod</td>
1750 <td align='center' colspan='3'>@AfterClass</td>
1753 <td>compbio.runner.msa.ClustalWTester</td>
1754 <td> </td><td> </td></tr>
1756 <td align='center' colspan='3'>@Test</td>
1760 <td>testRunOnCluster</td>
1761 <td>cluster runner </td>
1765 <td>testAddParameters</td>
1766 <td> </td></tr>
1769 <td>testPersistance</td>
1774 <td>testOptionsLocally</td>
1779 <td>readStatisticsClusterExecution</td>
1780 <td>cluster runner </td>
1784 <td>testRunWithMatrix</td>
1789 <td>testConfigurationLoading</td>
1794 <td>readStatistics</td>
1799 <td>testRunLocally</td>
1803 <td align='center' colspan='3'>@BeforeClass</td>
1806 <td align='center' colspan='3'>@BeforeMethod</td>
1809 <td align='center' colspan='3'>@AfterMethod</td>
1812 <td align='center' colspan='3'>@AfterClass</td>
1815 <td>compbio.engine.conf.DirectoryManagerTester</td>
1816 <td> </td><td> </td></tr>
1818 <td align='center' colspan='3'>@Test</td>
1822 <td>testGetDirectory</td>
1823 <td> </td></tr>
1826 <td>testNanoTime</td>
1827 <td> </td></tr>
1829 <td align='center' colspan='3'>@BeforeClass</td>
1832 <td align='center' colspan='3'>@BeforeMethod</td>
1835 <td align='center' colspan='3'>@AfterMethod</td>
1838 <td align='center' colspan='3'>@AfterClass</td>
1841 <td>compbio.metadata.PresetTester</td>
1842 <td> </td><td> </td></tr>
1844 <td align='center' colspan='3'>@Test</td>
1848 <td>testPresetWithMuptiOptions</td>
1849 <td> </td></tr>
1852 <td>marshallPreset</td>
1853 <td> </td></tr>
1856 <td>validatePresets</td>
1857 <td> </td></tr>
1859 <td align='center' colspan='3'>@BeforeClass</td>
1862 <td align='center' colspan='3'>@BeforeMethod</td>
1865 <td align='center' colspan='3'>@AfterMethod</td>
1868 <td align='center' colspan='3'>@AfterClass</td>
1871 <td>compbio.metadata.OptionMarshallerTester</td>
1872 <td> </td><td> </td></tr>
1874 <td align='center' colspan='3'>@Test</td>
1878 <td>testUnMarshalling</td>
1879 <td> </td></tr>
1882 <td>testMarshalling</td>
1883 <td> </td></tr>
1885 <td align='center' colspan='3'>@BeforeClass</td>
1888 <td align='center' colspan='3'>@BeforeMethod</td>
1893 <td> </td></tr>
1895 <td align='center' colspan='3'>@AfterMethod</td>
1898 <td align='center' colspan='3'>@AfterClass</td>
1901 <td>compbio.runner.msa.ClustalWParametersTester</td>
1902 <td> </td><td> </td></tr>
1904 <td align='center' colspan='3'>@Test</td>
1908 <td>testConstrainedParametersMaxValues</td>
1913 <td>testConstrainedParametersRandomValues</td>
1918 <td>testConstrainedParametersMinValues</td>
1923 <td>testArguments</td>
1928 <td>testOptions</td>
1933 <td>testDefaultParameters</td>
1938 <td>testParameters</td>
1943 <td>testPresets</td>
1948 <td>testConfiguration</td>
1949 <td> </td></tr>
1951 <td align='center' colspan='3'>@BeforeClass</td>
1954 <td align='center' colspan='3'>@BeforeMethod</td>
1962 <td align='center' colspan='3'>@AfterMethod</td>
1965 <td align='center' colspan='3'>@AfterClass</td>
1968 <td>compbio.engine.conf.RunnerConfigMarshallerTester</td>
1969 <td> </td><td> </td></tr>
1971 <td align='center' colspan='3'>@Test</td>
1975 <td>testValidationOnMarshalling</td>
1976 <td> </td></tr>
1979 <td>testUnMarshalling</td>
1980 <td> </td></tr>
1983 <td>testValidation</td>
1984 <td> </td></tr>
1987 <td>testSchemaFromCodeGeneration</td>
1988 <td> </td></tr>
1991 <td>testMarshalling</td>
1992 <td> </td></tr>
1994 <td align='center' colspan='3'>@BeforeClass</td>
1997 <td align='center' colspan='3'>@BeforeMethod</td>
2002 <td> </td></tr>
2004 <td align='center' colspan='3'>@AfterMethod</td>
2007 <td align='center' colspan='3'>@AfterClass</td>