website/tests/clustengine/compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.html

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   3 <title>TestNG:  compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester</title>
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  56 <h2 align='center'>compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester</h2><table border='1' align="center">
  57 <tr>
  58 <td>Tests passed/Failed/Skipped:</td><td>3/0/0</td>
  59 </tr><tr>
  60 <td>Started on:</td><td>Mon Dec 21 16:16:04 GMT 2009</td>
  61 </tr>
  62 <tr><td>Total time:</td><td>31 seconds (31283 ms)</td>
  63 </tr><tr>
  64 <td>Included groups:</td><td></td>
  65 </tr><tr>
  66 <td>Excluded groups:</td><td></td>
  67 </tr>
  68 </table><p/>
  69 <small><i>(Hover the method name to see the test class name)</i></small><p/>
  70 <table width='100%' border='1' class='invocation-passed'>
  71 <tr><td colspan='4' align='center'><b>PASSED TESTS</b></td></tr>
  72 <tr><td><b>Test method</b></td>
  73 <td><b>Instance</b></td>
  74 <td width="10%"><b>Time (seconds)</b></td>
  75 <td width="30%"><b>Exception</b></td>
  76 </tr>
  77 <tr>
  78 <td title='compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testCancel()'><b>testCancel</b><br>Test class:compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester</td>
  79 <td>compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester@2c76e369</td><td>0</td>
  80 <td><div><pre>compbio.engine.ResultNotAvailableException: Result for the jobId /homes/pvtroshin/workspace/clustengine/testoutput/local/ClustalW#556313082813930709 with file name TO1381.clustal.cluster.out is not found!
  81         at compbio.data.sequence.ClustalAlignmentUtil.readClustalFile(ClustalAlignmentUtil.java:258)
  82         at compbio.runner.clustal.ClustalW.getResults(ClustalW.java:54)
  83         at compbio.runner.clustal.ClustalW.getResults(ClustalW.java:15)
  84         at compbio.runner.ConfExecutable.getResults(ConfExecutable.java:158)
  85         at compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testCancel(DrmaaAsyncClusterEngineTester.java:94)
  86 ... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace270071071", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
  87 <div class='stack-trace' id='stack-trace270071071'><pre>compbio.engine.ResultNotAvailableException: Result for the jobId /homes/pvtroshin/workspace/clustengine/testoutput/local/ClustalW#556313082813930709 with file name TO1381.clustal.cluster.out is not found!
  88         at compbio.data.sequence.ClustalAlignmentUtil.readClustalFile(ClustalAlignmentUtil.java:258)
  89         at compbio.runner.clustal.ClustalW.getResults(ClustalW.java:54)
  90         at compbio.runner.clustal.ClustalW.getResults(ClustalW.java:15)
  91         at compbio.runner.ConfExecutable.getResults(ConfExecutable.java:158)
  92         at compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testCancel(DrmaaAsyncClusterEngineTester.java:94)
  93         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
  94         at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
  95         at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
  96         at java.lang.reflect.Method.invoke(Method.java:597)
  97         at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
  98         at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
  99         at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
 100         at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
 101         at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
 102         at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
 103         at org.testng.TestRunner.runWorkers(TestRunner.java:759)
 104         at org.testng.TestRunner.privateRun(TestRunner.java:592)
 105         at org.testng.TestRunner.run(TestRunner.java:486)
 106         at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
 107         at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
 108         at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
 109         at org.testng.SuiteRunner.run(SuiteRunner.java:204)
 110         at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
 111         at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
 112         at org.testng.TestNG.run(TestNG.java:784)
 113         at org.testng.TestNG.privateMain(TestNG.java:949)
 114         at org.testng.TestNG.main(TestNG.java:922)
 115 </pre></div></td>
 116 </tr>
 117 <tr>
 118 <td title='compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testGetJobStatus()'><b>testGetJobStatus</b><br>Test class:compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester</td>
 119 <td>compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester@2c76e369</td><td>11</td>
 120 <td></td>
 121 </tr>
 122 <tr>
 123 <td title='compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testSubmit()'><b>testSubmit</b><br>Test class:compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester</td>
 124 <td>compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester@2c76e369</td><td>18</td>
 125 <td></td>
 126 </tr>
 127 </table><p>
 128 </body>
 129 </html>