website/tests/clustengine/compbio.runner.clustal.ClustalWParametersTester.html

   1 <html>
   2 <head>
   3 <title>TestNG:  compbio.runner.clustal.ClustalWParametersTester</title>
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  55 <body>
  56 <h2 align='center'>compbio.runner.clustal.ClustalWParametersTester</h2><table border='1' align="center">
  57 <tr>
  58 <td>Tests passed/Failed/Skipped:</td><td>0/8/0</td>
  59 </tr><tr>
  60 <td>Started on:</td><td>Mon Dec 21 18:09:47 GMT 2009</td>
  61 </tr>
  62 <tr><td>Total time:</td><td>2 seconds (2219 ms)</td>
  63 </tr><tr>
  64 <td>Included groups:</td><td></td>
  65 </tr><tr>
  66 <td>Excluded groups:</td><td></td>
  67 </tr>
  68 </table><p/>
  69 <small><i>(Hover the method name to see the test class name)</i></small><p/>
  70 <table width='100%' border='1' class='invocation-failed'>
  71 <tr><td colspan='3' align='center'><b>FAILED TESTS</b></td></tr>
  72 <tr><td><b>Test method</b></td>
  73 <td width="10%"><b>Time (seconds)</b></td>
  74 <td width="30%"><b>Exception</b></td>
  75 </tr>
  76 <tr>
  77 <td title='compbio.runner.clustal.ClustalWParametersTester.testArguments()'>testArguments</td>
  78 <td>0</td>
  79 <td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979987799825706 is inaccessible or does not exist!\r
  80         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
  81         at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
  82         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
  83         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
  84         at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
  85         at compbio.runner.clustal.ClustalWParametersTester.testArguments(ClustalWParametersTester.java:137)\r
  86 ... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace24166053", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
  87 <div class='stack-trace' id='stack-trace24166053'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979987799825706 is inaccessible or does not exist!\r
  88         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
  89         at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
  90         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
  91         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
  92         at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
  93         at compbio.runner.clustal.ClustalWParametersTester.testArguments(ClustalWParametersTester.java:137)\r
  94         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
  95         at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
  96         at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
  97         at java.lang.reflect.Method.invoke(Method.java:597)\r
  98         at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
  99         at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
 100         at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
 101         at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
 102         at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
 103         at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
 104         at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
 105         at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
 106         at org.testng.TestRunner.run(TestRunner.java:486)\r
 107         at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
 108         at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
 109         at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
 110         at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
 111         at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
 112         at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
 113         at org.testng.TestNG.run(TestNG.java:751)\r
 114         at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
 115         at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
 116 </pre></div></td>
 117 </tr>
 118 <tr>
 119 <td title='compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMaxValues()'>testConstrainedParametersMaxValues</td>
 120 <td>0</td>
 121 <td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979988961908025 is inaccessible or does not exist!\r
 122         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
 123         at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
 124         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
 125         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
 126         at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)\r
 127         at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMaxValues(ClustalWParametersTester.java:151)\r
 128 ... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace30308427", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
 129 <div class='stack-trace' id='stack-trace30308427'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979988961908025 is inaccessible or does not exist!\r
 130         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
 131         at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
 132         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
 133         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
 134         at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)\r
 135         at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMaxValues(ClustalWParametersTester.java:151)\r
 136         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
 137         at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
 138         at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
 139         at java.lang.reflect.Method.invoke(Method.java:597)\r
 140         at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
 141         at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
 142         at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
 143         at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
 144         at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
 145         at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
 146         at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
 147         at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
 148         at org.testng.TestRunner.run(TestRunner.java:486)\r
 149         at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
 150         at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
 151         at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
 152         at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
 153         at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
 154         at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
 155         at org.testng.TestNG.run(TestNG.java:751)\r
 156         at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
 157         at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
 158 </pre></div></td>
 159 </tr>
 160 <tr>
 161 <td title='compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMinValues()'>testConstrainedParametersMinValues</td>
 162 <td>0</td>
 163 <td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#70979988327544395 is inaccessible or does not exist!\r
 164         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
 165         at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
 166         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
 167         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
 168         at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)\r
 169         at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMinValues(ClustalWParametersTester.java:144)\r
 170 ... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace9949215", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
 171 <div class='stack-trace' id='stack-trace9949215'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#70979988327544395 is inaccessible or does not exist!\r
 172         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
 173         at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
 174         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
 175         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
 176         at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)\r
 177         at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMinValues(ClustalWParametersTester.java:144)\r
 178         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
 179         at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
 180         at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
 181         at java.lang.reflect.Method.invoke(Method.java:597)\r
 182         at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
 183         at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
 184         at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
 185         at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
 186         at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
 187         at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
 188         at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
 189         at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
 190         at org.testng.TestRunner.run(TestRunner.java:486)\r
 191         at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
 192         at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
 193         at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
 194         at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
 195         at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
 196         at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
 197         at org.testng.TestNG.run(TestNG.java:751)\r
 198         at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
 199         at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
 200 </pre></div></td>
 201 </tr>
 202 <tr>
 203 <td title='compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersRandomValues()'>testConstrainedParametersRandomValues</td>
 204 <td>0</td>
 205 <td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#46979989070571443 is inaccessible or does not exist!\r
 206         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
 207         at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
 208         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
 209         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
 210         at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersRandomValues(ClustalWParametersTester.java:164)\r
 211 ... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace25934938", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
 212 <div class='stack-trace' id='stack-trace25934938'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#46979989070571443 is inaccessible or does not exist!\r
 213         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
 214         at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
 215         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
 216         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
 217         at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersRandomValues(ClustalWParametersTester.java:164)\r
 218         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
 219         at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
 220         at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
 221         at java.lang.reflect.Method.invoke(Method.java:597)\r
 222         at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
 223         at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
 224         at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
 225         at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
 226         at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
 227         at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
 228         at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
 229         at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
 230         at org.testng.TestRunner.run(TestRunner.java:486)\r
 231         at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
 232         at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
 233         at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
 234         at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
 235         at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
 236         at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
 237         at org.testng.TestNG.run(TestNG.java:751)\r
 238         at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
 239         at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
 240 </pre></div></td>
 241 </tr>
 242 <tr>
 243 <td title='compbio.runner.clustal.ClustalWParametersTester.testDefaultParameters()'>testDefaultParameters</td>
 244 <td>0</td>
 245 <td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#38979988048124217 is inaccessible or does not exist!\r
 246         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
 247         at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
 248         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
 249         at compbio.runner.clustal.ClustalWParametersTester.testDefaultParameters(ClustalWParametersTester.java:105)\r
 250 ... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace11854491", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
 251 <div class='stack-trace' id='stack-trace11854491'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#38979988048124217 is inaccessible or does not exist!\r
 252         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
 253         at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
 254         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
 255         at compbio.runner.clustal.ClustalWParametersTester.testDefaultParameters(ClustalWParametersTester.java:105)\r
 256         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
 257         at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
 258         at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
 259         at java.lang.reflect.Method.invoke(Method.java:597)\r
 260         at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
 261         at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
 262         at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
 263         at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
 264         at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
 265         at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
 266         at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
 267         at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
 268         at org.testng.TestRunner.run(TestRunner.java:486)\r
 269         at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
 270         at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
 271         at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
 272         at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
 273         at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
 274         at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
 275         at org.testng.TestNG.run(TestNG.java:751)\r
 276         at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
 277         at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
 278 </pre></div></td>
 279 </tr>
 280 <tr>
 281 <td title='compbio.runner.clustal.ClustalWParametersTester.testOptions()'>testOptions</td>
 282 <td>0</td>
 283 <td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979988189879815 is inaccessible or does not exist!\r
 284         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
 285         at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
 286         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
 287         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
 288         at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
 289         at compbio.runner.clustal.ClustalWParametersTester.testOptions(ClustalWParametersTester.java:122)\r
 290 ... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace26460367", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
 291 <div class='stack-trace' id='stack-trace26460367'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979988189879815 is inaccessible or does not exist!\r
 292         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
 293         at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
 294         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
 295         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
 296         at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
 297         at compbio.runner.clustal.ClustalWParametersTester.testOptions(ClustalWParametersTester.java:122)\r
 298         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
 299         at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
 300         at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
 301         at java.lang.reflect.Method.invoke(Method.java:597)\r
 302         at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
 303         at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
 304         at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
 305         at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
 306         at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
 307         at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
 308         at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
 309         at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
 310         at org.testng.TestRunner.run(TestRunner.java:486)\r
 311         at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
 312         at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
 313         at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
 314         at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
 315         at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
 316         at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
 317         at org.testng.TestNG.run(TestNG.java:751)\r
 318         at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
 319         at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
 320 </pre></div></td>
 321 </tr>
 322 <tr>
 323 <td title='compbio.runner.clustal.ClustalWParametersTester.testParameters()'>testParameters</td>
 324 <td>0</td>
 325 <td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979987926880363 is inaccessible or does not exist!\r
 326         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
 327         at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
 328         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
 329         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
 330         at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
 331         at compbio.runner.clustal.ClustalWParametersTester.testParameters(ClustalWParametersTester.java:129)\r
 332 ... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace3932167", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
 333 <div class='stack-trace' id='stack-trace3932167'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979987926880363 is inaccessible or does not exist!\r
 334         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
 335         at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
 336         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
 337         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
 338         at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
 339         at compbio.runner.clustal.ClustalWParametersTester.testParameters(ClustalWParametersTester.java:129)\r
 340         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
 341         at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
 342         at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
 343         at java.lang.reflect.Method.invoke(Method.java:597)\r
 344         at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
 345         at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
 346         at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
 347         at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
 348         at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
 349         at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
 350         at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
 351         at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
 352         at org.testng.TestRunner.run(TestRunner.java:486)\r
 353         at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
 354         at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
 355         at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
 356         at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
 357         at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
 358         at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
 359         at org.testng.TestNG.run(TestNG.java:751)\r
 360         at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
 361         at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
 362 </pre></div></td>
 363 </tr>
 364 <tr>
 365 <td title='compbio.runner.clustal.ClustalWParametersTester.testPresets()'>testPresets</td>
 366 <td>0</td>
 367 <td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#85979987545393788 is inaccessible or does not exist!\r
 368         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
 369         at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
 370         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
 371         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
 372         at compbio.runner.clustal.ClustalWParametersTester.testPresets(ClustalWParametersTester.java:231)\r
 373 ... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace26156414", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
 374 <div class='stack-trace' id='stack-trace26156414'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#85979987545393788 is inaccessible or does not exist!\r
 375         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
 376         at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
 377         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
 378         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
 379         at compbio.runner.clustal.ClustalWParametersTester.testPresets(ClustalWParametersTester.java:231)\r
 380         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
 381         at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
 382         at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
 383         at java.lang.reflect.Method.invoke(Method.java:597)\r
 384         at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
 385         at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
 386         at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
 387         at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
 388         at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
 389         at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
 390         at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
 391         at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
 392         at org.testng.TestRunner.run(TestRunner.java:486)\r
 393         at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
 394         at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
 395         at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
 396         at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
 397         at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
 398         at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
 399         at org.testng.TestNG.run(TestNG.java:751)\r
 400         at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
 401         at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
 402 </pre></div></td>
 403 </tr>
 404 </table><p>
 405 </body>
 406 </html>