3 <title>TestNG: compbio.runner.clustal.ClustalWParametersTester</title>
4 <link href="../testng.css" rel="stylesheet" type="text/css" />
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56 <h2 align='center'>compbio.runner.clustal.ClustalWParametersTester</h2><table border='1' align="center">
58 <td>Tests passed/Failed/Skipped:</td><td>0/8/0</td>
60 <td>Started on:</td><td>Mon Dec 21 18:09:47 GMT 2009</td>
62 <tr><td>Total time:</td><td>2 seconds (2219 ms)</td>
64 <td>Included groups:</td><td></td>
66 <td>Excluded groups:</td><td></td>
69 <small><i>(Hover the method name to see the test class name)</i></small><p/>
70 <table width='100%' border='1' class='invocation-failed'>
71 <tr><td colspan='3' align='center'><b>FAILED TESTS</b></td></tr>
72 <tr><td><b>Test method</b></td>
73 <td width="10%"><b>Time (seconds)</b></td>
74 <td width="30%"><b>Exception</b></td>
77 <td title='compbio.runner.clustal.ClustalWParametersTester.testArguments()'>testArguments</td>
79 <td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979987799825706 is inaccessible or does not exist!
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80 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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81 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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82 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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83 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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84 at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)
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85 at compbio.runner.clustal.ClustalWParametersTester.testArguments(ClustalWParametersTester.java:137)
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86 ... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace24166053", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
87 <div class='stack-trace' id='stack-trace24166053'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979987799825706 is inaccessible or does not exist!
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88 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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89 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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90 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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91 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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92 at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)
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93 at compbio.runner.clustal.ClustalWParametersTester.testArguments(ClustalWParametersTester.java:137)
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94 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
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95 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
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96 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
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97 at java.lang.reflect.Method.invoke(Method.java:597)
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98 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)
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99 at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)
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100 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)
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101 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)
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102 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)
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103 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)
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104 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
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105 at org.testng.TestRunner.privateRun(TestRunner.java:592)
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106 at org.testng.TestRunner.run(TestRunner.java:486)
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107 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
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108 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
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109 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
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110 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
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111 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)
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112 at org.testng.TestNG.runSuitesLocally(TestNG.java:842)
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113 at org.testng.TestNG.run(TestNG.java:751)
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114 at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)
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115 at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)
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119 <td title='compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMaxValues()'>testConstrainedParametersMaxValues</td>
121 <td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979988961908025 is inaccessible or does not exist!
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122 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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123 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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124 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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125 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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126 at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)
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127 at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMaxValues(ClustalWParametersTester.java:151)
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128 ... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace30308427", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
129 <div class='stack-trace' id='stack-trace30308427'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979988961908025 is inaccessible or does not exist!
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130 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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131 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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132 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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133 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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134 at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)
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135 at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMaxValues(ClustalWParametersTester.java:151)
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136 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
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137 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
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138 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
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139 at java.lang.reflect.Method.invoke(Method.java:597)
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140 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)
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141 at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)
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142 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)
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143 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)
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144 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)
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145 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)
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146 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
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147 at org.testng.TestRunner.privateRun(TestRunner.java:592)
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148 at org.testng.TestRunner.run(TestRunner.java:486)
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149 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
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150 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
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151 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
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152 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
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153 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)
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154 at org.testng.TestNG.runSuitesLocally(TestNG.java:842)
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155 at org.testng.TestNG.run(TestNG.java:751)
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156 at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)
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157 at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)
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161 <td title='compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMinValues()'>testConstrainedParametersMinValues</td>
163 <td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#70979988327544395 is inaccessible or does not exist!
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164 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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165 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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166 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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167 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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168 at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)
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169 at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMinValues(ClustalWParametersTester.java:144)
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170 ... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace9949215", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
171 <div class='stack-trace' id='stack-trace9949215'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#70979988327544395 is inaccessible or does not exist!
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172 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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173 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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174 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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175 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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176 at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)
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177 at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMinValues(ClustalWParametersTester.java:144)
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178 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
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179 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
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180 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
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181 at java.lang.reflect.Method.invoke(Method.java:597)
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182 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)
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183 at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)
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184 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)
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185 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)
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186 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)
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187 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)
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188 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
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189 at org.testng.TestRunner.privateRun(TestRunner.java:592)
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190 at org.testng.TestRunner.run(TestRunner.java:486)
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191 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
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192 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
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193 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
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194 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
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195 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)
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196 at org.testng.TestNG.runSuitesLocally(TestNG.java:842)
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197 at org.testng.TestNG.run(TestNG.java:751)
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198 at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)
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199 at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)
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203 <td title='compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersRandomValues()'>testConstrainedParametersRandomValues</td>
205 <td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#46979989070571443 is inaccessible or does not exist!
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206 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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207 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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208 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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209 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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210 at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersRandomValues(ClustalWParametersTester.java:164)
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211 ... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace25934938", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
212 <div class='stack-trace' id='stack-trace25934938'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#46979989070571443 is inaccessible or does not exist!
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213 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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214 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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215 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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216 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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217 at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersRandomValues(ClustalWParametersTester.java:164)
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218 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
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219 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
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220 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
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221 at java.lang.reflect.Method.invoke(Method.java:597)
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222 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)
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223 at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)
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224 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)
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225 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)
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226 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)
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227 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)
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228 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
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229 at org.testng.TestRunner.privateRun(TestRunner.java:592)
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230 at org.testng.TestRunner.run(TestRunner.java:486)
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231 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
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232 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
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233 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
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234 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
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235 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)
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236 at org.testng.TestNG.runSuitesLocally(TestNG.java:842)
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237 at org.testng.TestNG.run(TestNG.java:751)
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238 at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)
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239 at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)
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243 <td title='compbio.runner.clustal.ClustalWParametersTester.testDefaultParameters()'>testDefaultParameters</td>
245 <td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#38979988048124217 is inaccessible or does not exist!
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246 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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247 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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248 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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249 at compbio.runner.clustal.ClustalWParametersTester.testDefaultParameters(ClustalWParametersTester.java:105)
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250 ... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace11854491", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
251 <div class='stack-trace' id='stack-trace11854491'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#38979988048124217 is inaccessible or does not exist!
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252 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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253 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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254 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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255 at compbio.runner.clustal.ClustalWParametersTester.testDefaultParameters(ClustalWParametersTester.java:105)
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256 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
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257 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
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258 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
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259 at java.lang.reflect.Method.invoke(Method.java:597)
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260 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)
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261 at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)
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262 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)
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263 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)
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264 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)
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265 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)
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266 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
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267 at org.testng.TestRunner.privateRun(TestRunner.java:592)
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268 at org.testng.TestRunner.run(TestRunner.java:486)
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269 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
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270 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
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271 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
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272 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
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273 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)
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274 at org.testng.TestNG.runSuitesLocally(TestNG.java:842)
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275 at org.testng.TestNG.run(TestNG.java:751)
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276 at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)
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277 at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)
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281 <td title='compbio.runner.clustal.ClustalWParametersTester.testOptions()'>testOptions</td>
283 <td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979988189879815 is inaccessible or does not exist!
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284 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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285 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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286 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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287 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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288 at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)
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289 at compbio.runner.clustal.ClustalWParametersTester.testOptions(ClustalWParametersTester.java:122)
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290 ... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace26460367", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
291 <div class='stack-trace' id='stack-trace26460367'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979988189879815 is inaccessible or does not exist!
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292 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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293 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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294 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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295 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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296 at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)
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297 at compbio.runner.clustal.ClustalWParametersTester.testOptions(ClustalWParametersTester.java:122)
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298 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
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299 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
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300 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
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301 at java.lang.reflect.Method.invoke(Method.java:597)
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302 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)
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303 at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)
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304 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)
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305 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)
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306 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)
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307 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)
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308 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
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309 at org.testng.TestRunner.privateRun(TestRunner.java:592)
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310 at org.testng.TestRunner.run(TestRunner.java:486)
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311 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
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312 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
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313 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
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314 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
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315 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)
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316 at org.testng.TestNG.runSuitesLocally(TestNG.java:842)
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317 at org.testng.TestNG.run(TestNG.java:751)
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318 at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)
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319 at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)
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323 <td title='compbio.runner.clustal.ClustalWParametersTester.testParameters()'>testParameters</td>
325 <td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979987926880363 is inaccessible or does not exist!
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326 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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327 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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328 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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329 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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330 at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)
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331 at compbio.runner.clustal.ClustalWParametersTester.testParameters(ClustalWParametersTester.java:129)
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332 ... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace3932167", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
333 <div class='stack-trace' id='stack-trace3932167'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979987926880363 is inaccessible or does not exist!
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334 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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335 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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336 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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337 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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338 at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)
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339 at compbio.runner.clustal.ClustalWParametersTester.testParameters(ClustalWParametersTester.java:129)
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340 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
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341 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
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342 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
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343 at java.lang.reflect.Method.invoke(Method.java:597)
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344 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)
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345 at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)
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346 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)
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347 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)
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348 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)
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349 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)
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350 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
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351 at org.testng.TestRunner.privateRun(TestRunner.java:592)
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352 at org.testng.TestRunner.run(TestRunner.java:486)
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353 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
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354 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
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355 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
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356 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
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357 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)
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358 at org.testng.TestNG.runSuitesLocally(TestNG.java:842)
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359 at org.testng.TestNG.run(TestNG.java:751)
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360 at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)
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361 at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)
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365 <td title='compbio.runner.clustal.ClustalWParametersTester.testPresets()'>testPresets</td>
367 <td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#85979987545393788 is inaccessible or does not exist!
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368 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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369 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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370 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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371 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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372 at compbio.runner.clustal.ClustalWParametersTester.testPresets(ClustalWParametersTester.java:231)
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373 ... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace26156414", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
374 <div class='stack-trace' id='stack-trace26156414'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#85979987545393788 is inaccessible or does not exist!
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375 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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376 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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377 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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378 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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379 at compbio.runner.clustal.ClustalWParametersTester.testPresets(ClustalWParametersTester.java:231)
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380 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
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381 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
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382 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
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383 at java.lang.reflect.Method.invoke(Method.java:597)
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384 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)
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385 at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)
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386 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)
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387 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)
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388 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)
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389 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)
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390 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
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391 at org.testng.TestRunner.privateRun(TestRunner.java:592)
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392 at org.testng.TestRunner.run(TestRunner.java:486)
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393 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
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394 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
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395 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
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396 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
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397 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)
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398 at org.testng.TestNG.runSuitesLocally(TestNG.java:842)
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399 at org.testng.TestNG.run(TestNG.java:751)
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400 at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)
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401 at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)
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