website/tests/clustengine/compbio.runner.clustal.ClustalWParametersTester.xml

   1 <?xml version="1.0" encoding="UTF-8"?>\r
   2 <testsuite name="compbio.runner.clustal.ClustalWParametersTester" failures="8" tests="8" time="2.219" errors="0">\r
   3   <properties/>\r
   4   <testcase name="testPresets" time="0.344" classname="compbio.runner.clustal.ClustalWParametersTester">\r
   5     <failure type="java.lang.IllegalArgumentException" message="Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#85979987545393788 is inaccessible or does not exist!">\r
   6       <![CDATA[java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#85979987545393788 is inaccessible or does not exist!\r
   7         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
   8         at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)\r
   9         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
  10         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
  11         at compbio.runner.clustal.ClustalWParametersTester.testPresets(ClustalWParametersTester.java:231)\r
  12 ... Removed 22 stack frames]]>\r
  13     </failure>\r
  14   </testcase>\r
  15   <testcase name="testArguments" time="0.062" classname="compbio.runner.clustal.ClustalWParametersTester">\r
  16     <failure type="java.lang.IllegalArgumentException" message="Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979987799825706 is inaccessible or does not exist!">\r
  17       <![CDATA[java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979987799825706 is inaccessible or does not exist!\r
  18         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
  19         at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)\r
  20         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
  21         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
  22         at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
  23         at compbio.runner.clustal.ClustalWParametersTester.testArguments(ClustalWParametersTester.java:137)\r
  24 ... Removed 22 stack frames]]>\r
  25     </failure>\r
  26   </testcase>\r
  27   <testcase name="testParameters" time="0.063" classname="compbio.runner.clustal.ClustalWParametersTester">\r
  28     <failure type="java.lang.IllegalArgumentException" message="Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979987926880363 is inaccessible or does not exist!">\r
  29       <![CDATA[java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979987926880363 is inaccessible or does not exist!\r
  30         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
  31         at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)\r
  32         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
  33         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
  34         at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
  35         at compbio.runner.clustal.ClustalWParametersTester.testParameters(ClustalWParametersTester.java:129)\r
  36 ... Removed 22 stack frames]]>\r
  37     </failure>\r
  38   </testcase>\r
  39   <testcase name="testDefaultParameters" time="0.031" classname="compbio.runner.clustal.ClustalWParametersTester">\r
  40     <failure type="java.lang.IllegalArgumentException" message="Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#38979988048124217 is inaccessible or does not exist!">\r
  41       <![CDATA[java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#38979988048124217 is inaccessible or does not exist!\r
  42         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
  43         at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)\r
  44         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
  45         at compbio.runner.clustal.ClustalWParametersTester.testDefaultParameters(ClustalWParametersTester.java:105)\r
  46 ... Removed 22 stack frames]]>\r
  47     </failure>\r
  48   </testcase>\r
  49   <testcase name="testOptions" time="0.047" classname="compbio.runner.clustal.ClustalWParametersTester">\r
  50     <failure type="java.lang.IllegalArgumentException" message="Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979988189879815 is inaccessible or does not exist!">\r
  51       <![CDATA[java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979988189879815 is inaccessible or does not exist!\r
  52         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
  53         at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)\r
  54         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
  55         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
  56         at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
  57         at compbio.runner.clustal.ClustalWParametersTester.testOptions(ClustalWParametersTester.java:122)\r
  58 ... Removed 22 stack frames]]>\r
  59     </failure>\r
  60   </testcase>\r
  61   <testcase name="testConstrainedParametersMinValues" time="0.546" classname="compbio.runner.clustal.ClustalWParametersTester">\r
  62     <failure type="java.lang.IllegalArgumentException" message="Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#70979988327544395 is inaccessible or does not exist!">\r
  63       <![CDATA[java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#70979988327544395 is inaccessible or does not exist!\r
  64         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
  65         at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)\r
  66         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
  67         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
  68         at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)\r
  69         at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMinValues(ClustalWParametersTester.java:144)\r
  70 ... Removed 22 stack frames]]>\r
  71     </failure>\r
  72   </testcase>\r
  73   <testcase name="testConstrainedParametersMaxValues" time="0.031" classname="compbio.runner.clustal.ClustalWParametersTester">\r
  74     <failure type="java.lang.IllegalArgumentException" message="Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979988961908025 is inaccessible or does not exist!">\r
  75       <![CDATA[java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979988961908025 is inaccessible or does not exist!\r
  76         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
  77         at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)\r
  78         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
  79         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
  80         at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)\r
  81         at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMaxValues(ClustalWParametersTester.java:151)\r
  82 ... Removed 22 stack frames]]>\r
  83     </failure>\r
  84   </testcase>\r
  85   <testcase name="testConstrainedParametersRandomValues" time="0.031" classname="compbio.runner.clustal.ClustalWParametersTester">\r
  86     <failure type="java.lang.IllegalArgumentException" message="Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#46979989070571443 is inaccessible or does not exist!">\r
  87       <![CDATA[java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#46979989070571443 is inaccessible or does not exist!\r
  88         at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
  89         at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)\r
  90         at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
  91         at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
  92         at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersRandomValues(ClustalWParametersTester.java:164)\r
  93 ... Removed 22 stack frames]]>\r
  94     </failure>\r
  95   </testcase>\r
  96 </testsuite>\r