1 <?xml version="1.0" encoding="UTF-8"?>
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2 <testsuite name="compbio.runner.clustal.ClustalWParametersTester" failures="8" tests="8" time="2.219" errors="0">
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4 <testcase name="testPresets" time="0.344" classname="compbio.runner.clustal.ClustalWParametersTester">
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5 <failure type="java.lang.IllegalArgumentException" message="Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#85979987545393788 is inaccessible or does not exist!">
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6 <![CDATA[java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#85979987545393788 is inaccessible or does not exist!
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7 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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8 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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9 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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10 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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11 at compbio.runner.clustal.ClustalWParametersTester.testPresets(ClustalWParametersTester.java:231)
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12 ... Removed 22 stack frames]]>
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15 <testcase name="testArguments" time="0.062" classname="compbio.runner.clustal.ClustalWParametersTester">
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16 <failure type="java.lang.IllegalArgumentException" message="Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979987799825706 is inaccessible or does not exist!">
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17 <![CDATA[java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979987799825706 is inaccessible or does not exist!
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18 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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19 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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20 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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21 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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22 at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)
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23 at compbio.runner.clustal.ClustalWParametersTester.testArguments(ClustalWParametersTester.java:137)
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24 ... Removed 22 stack frames]]>
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27 <testcase name="testParameters" time="0.063" classname="compbio.runner.clustal.ClustalWParametersTester">
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28 <failure type="java.lang.IllegalArgumentException" message="Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979987926880363 is inaccessible or does not exist!">
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29 <![CDATA[java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979987926880363 is inaccessible or does not exist!
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30 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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31 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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32 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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33 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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34 at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)
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35 at compbio.runner.clustal.ClustalWParametersTester.testParameters(ClustalWParametersTester.java:129)
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36 ... Removed 22 stack frames]]>
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39 <testcase name="testDefaultParameters" time="0.031" classname="compbio.runner.clustal.ClustalWParametersTester">
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40 <failure type="java.lang.IllegalArgumentException" message="Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#38979988048124217 is inaccessible or does not exist!">
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41 <![CDATA[java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#38979988048124217 is inaccessible or does not exist!
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42 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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43 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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44 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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45 at compbio.runner.clustal.ClustalWParametersTester.testDefaultParameters(ClustalWParametersTester.java:105)
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46 ... Removed 22 stack frames]]>
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49 <testcase name="testOptions" time="0.047" classname="compbio.runner.clustal.ClustalWParametersTester">
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50 <failure type="java.lang.IllegalArgumentException" message="Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979988189879815 is inaccessible or does not exist!">
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51 <![CDATA[java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979988189879815 is inaccessible or does not exist!
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52 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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53 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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54 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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55 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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56 at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)
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57 at compbio.runner.clustal.ClustalWParametersTester.testOptions(ClustalWParametersTester.java:122)
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58 ... Removed 22 stack frames]]>
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61 <testcase name="testConstrainedParametersMinValues" time="0.546" classname="compbio.runner.clustal.ClustalWParametersTester">
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62 <failure type="java.lang.IllegalArgumentException" message="Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#70979988327544395 is inaccessible or does not exist!">
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63 <![CDATA[java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#70979988327544395 is inaccessible or does not exist!
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64 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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65 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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66 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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67 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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68 at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)
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69 at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMinValues(ClustalWParametersTester.java:144)
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70 ... Removed 22 stack frames]]>
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73 <testcase name="testConstrainedParametersMaxValues" time="0.031" classname="compbio.runner.clustal.ClustalWParametersTester">
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74 <failure type="java.lang.IllegalArgumentException" message="Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979988961908025 is inaccessible or does not exist!">
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75 <![CDATA[java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979988961908025 is inaccessible or does not exist!
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76 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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77 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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78 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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79 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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80 at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)
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81 at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMaxValues(ClustalWParametersTester.java:151)
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82 ... Removed 22 stack frames]]>
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85 <testcase name="testConstrainedParametersRandomValues" time="0.031" classname="compbio.runner.clustal.ClustalWParametersTester">
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86 <failure type="java.lang.IllegalArgumentException" message="Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#46979989070571443 is inaccessible or does not exist!">
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87 <![CDATA[java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#46979989070571443 is inaccessible or does not exist!
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88 at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)
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89 at compbio.engine.local.ExecutableWrapper.<init>(ExecutableWrapper.java:57)
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90 at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)
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91 at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)
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92 at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersRandomValues(ClustalWParametersTester.java:164)
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93 ... Removed 22 stack frames]]>
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