4 <suite name="Ant suite">
7 <method signature="compbio.engine.FilePullerTester.testGetDelay()" name="testGetDelay" class="compbio.engine.FilePullerTester"/>
8 <method signature="compbio.engine.FilePullerTester.testPull()" name="testPull" class="compbio.engine.FilePullerTester"/>
9 <method signature="compbio.engine.FilePullerTester.testCache()" name="testCache" class="compbio.engine.FilePullerTester"/>
10 <method signature="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testCancel()" name="testCancel" class="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
11 <method signature="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testGetJobStatus()" name="testGetJobStatus" class="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
12 <method signature="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testSubmit()" name="testSubmit" class="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
13 <method signature="compbio.engine.local.AsyncLocalRunnerTester.testAsyncCancelOperation()" name="testAsyncCancelOperation" class="compbio.engine.local.AsyncLocalRunnerTester"/>
14 <method signature="compbio.engine.local.AsyncLocalRunnerTester.testAsyncRetrievOperation()" name="testAsyncRetrievOperation" class="compbio.engine.local.AsyncLocalRunnerTester"/>
15 <method signature="compbio.engine.local.AsyncLocalRunnerTester.testCancelCompletedTaskLocally()" name="testCancelCompletedTaskLocally" class="compbio.engine.local.AsyncLocalRunnerTester"/>
16 <method signature="compbio.engine.local.AsyncLocalRunnerTester.testCancelLocally()" name="testCancelLocally" class="compbio.engine.local.AsyncLocalRunnerTester"/>
17 <method signature="compbio.engine.local.AsyncLocalRunnerTester.testGetStatus()" name="testGetStatus" class="compbio.engine.local.AsyncLocalRunnerTester"/>
18 <method signature="compbio.engine.local.AsyncLocalRunnerTester.testMultipleCancelLocally()" name="testMultipleCancelLocally" class="compbio.engine.local.AsyncLocalRunnerTester"/>
19 <method signature="compbio.engine.local.AsyncLocalRunnerTester.testSubmitLocally()" name="testSubmitLocally" class="compbio.engine.local.AsyncLocalRunnerTester"/>
20 <method signature="compbio.engine.local.LocalRunnerTester.testCancelCompletedTaskLocally()" name="testCancelCompletedTaskLocally" class="compbio.engine.local.LocalRunnerTester"/>
21 <method signature="compbio.engine.local.LocalRunnerTester.testCancelLocally()" name="testCancelLocally" class="compbio.engine.local.LocalRunnerTester"/>
22 <method signature="compbio.engine.local.LocalRunnerTester.testMultipleCancelLocally()" name="testMultipleCancelLocally" class="compbio.engine.local.LocalRunnerTester"/>
23 <method signature="compbio.engine.cluster.drmaa.ClusterSessionTester.testTaskList()" name="testTaskList" class="compbio.engine.cluster.drmaa.ClusterSessionTester"/>
24 <method signature="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester.testCancel()" name="testCancel" class="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester"/>
25 <method signature="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester.testSubmit()" name="testSubmit" class="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester"/>
27 <group name="cluster">
28 <method signature="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testCancel()" name="testCancel" class="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
29 <method signature="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testGetJobStatus()" name="testGetJobStatus" class="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
30 <method signature="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testSubmit()" name="testSubmit" class="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
31 <method signature="compbio.engine.conf.PropertyHelperManagerTester.testClusterEngineConf()" name="testClusterEngineConf" class="compbio.engine.conf.PropertyHelperManagerTester"/>
32 <method signature="compbio.runner.conservation.AAConTester.testRunOnClusterAsync()" name="testRunOnClusterAsync" class="compbio.runner.conservation.AAConTester"/>
33 <method signature="compbio.runner.disorder.DisemblTester.testRunOnCluster()" name="testRunOnCluster" class="compbio.runner.disorder.DisemblTester"/>
34 <method signature="compbio.runner.disorder.DisemblTester.testRunOnClusterAsync()" name="testRunOnClusterAsync" class="compbio.runner.disorder.DisemblTester"/>
35 <method signature="compbio.runner.disorder.GlobPlotTester.testRunOnCluster()" name="testRunOnCluster" class="compbio.runner.disorder.GlobPlotTester"/>
36 <method signature="compbio.runner.disorder.GlobPlotTester.testRunOnClusterAsync()" name="testRunOnClusterAsync" class="compbio.runner.disorder.GlobPlotTester"/>
37 <method signature="compbio.runner.disorder.IUPredTester.testRunOnCluster()" name="testRunOnCluster" class="compbio.runner.disorder.IUPredTester"/>
38 <method signature="compbio.runner.disorder.IUPredTester.testRunOnClusterAsync()" name="testRunOnClusterAsync" class="compbio.runner.disorder.IUPredTester"/>
39 <method signature="compbio.runner.disorder.JronnTester.testRunOnCluster()" name="testRunOnCluster" class="compbio.runner.disorder.JronnTester"/>
40 <method signature="compbio.runner.disorder.JronnTester.testRunOnClusterAsync()" name="testRunOnClusterAsync" class="compbio.runner.disorder.JronnTester"/>
41 <method signature="compbio.runner.msa.MafftTester.testClusterExecute()" name="testClusterExecute" class="compbio.runner.msa.MafftTester"/>
42 <method signature="compbio.runner.msa.MafftTester.testRunOnClusterAsyncCheckStatusLongPoolingTime()" name="testRunOnClusterAsyncCheckStatusLongPoolingTime" class="compbio.runner.msa.MafftTester"/>
43 <method signature="compbio.runner.msa.MuscleTester.testRunOnCluster()" name="testRunOnCluster" class="compbio.runner.msa.MuscleTester"/>
44 <method signature="compbio.runner.msa.ProbconsTester.testClusterExecute()" name="testClusterExecute" class="compbio.runner.msa.ProbconsTester"/>
45 <method signature="compbio.runner.msa.TcoffeeTester.testClusterExecute()" name="testClusterExecute" class="compbio.runner.msa.TcoffeeTester"/>
46 <method signature="compbio.runner.msa.TcoffeeTester.testPersistance()" name="testPersistance" class="compbio.runner.msa.TcoffeeTester"/>
47 <method signature="compbio.runner.msa.ClustalWTester.readStatisticsClusterExecution()" name="readStatisticsClusterExecution" class="compbio.runner.msa.ClustalWTester"/>
48 <method signature="compbio.runner.msa.ClustalWTester.testRunOnCluster()" name="testRunOnCluster" class="compbio.runner.msa.ClustalWTester"/>
49 <method signature="compbio.engine.cluster.drmaa.ClusterSessionTester.testTaskList()" name="testTaskList" class="compbio.engine.cluster.drmaa.ClusterSessionTester"/>
50 <method signature="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester.testCancel()" name="testCancel" class="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester"/>
51 <method signature="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester.testSubmit()" name="testSubmit" class="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester"/>
54 <method signature="compbio.runner.conservation.AAConTester.readStatistics()" name="readStatistics" class="compbio.runner.conservation.AAConTester"/>
55 <method signature="compbio.runner.conservation.AAConTester.testConfigurationLoading()" name="testConfigurationLoading" class="compbio.runner.conservation.AAConTester"/>
56 <method signature="compbio.runner.conservation.AAConTester.testPersistance()" name="testPersistance" class="compbio.runner.conservation.AAConTester"/>
57 <method signature="compbio.runner.conservation.AAConTester.testRunLocally()" name="testRunLocally" class="compbio.runner.conservation.AAConTester"/>
58 <method signature="compbio.runner.conservation.AAConTester.testRunLocallyOnTwoCpu()" name="testRunLocallyOnTwoCpu" class="compbio.runner.conservation.AAConTester"/>
59 <method signature="compbio.runner.conservation.AAConTester.testRunLocallyWithPreset()" name="testRunLocallyWithPreset" class="compbio.runner.conservation.AAConTester"/>
60 <method signature="compbio.runner.conservation.AAConTester.testRunOnCluster()" name="testRunOnCluster" class="compbio.runner.conservation.AAConTester"/>
61 <method signature="compbio.runner.conservation.AAConTester.testRunOnClusterAsync()" name="testRunOnClusterAsync" class="compbio.runner.conservation.AAConTester"/>
62 <method signature="compbio.runner.disorder.DisemblTester.readStatistics()" name="readStatistics" class="compbio.runner.disorder.DisemblTester"/>
63 <method signature="compbio.runner.disorder.DisemblTester.testConfigurationLoading()" name="testConfigurationLoading" class="compbio.runner.disorder.DisemblTester"/>
64 <method signature="compbio.runner.disorder.DisemblTester.testPersistance()" name="testPersistance" class="compbio.runner.disorder.DisemblTester"/>
65 <method signature="compbio.runner.disorder.DisemblTester.testRunLocally()" name="testRunLocally" class="compbio.runner.disorder.DisemblTester"/>
66 <method signature="compbio.runner.disorder.DisemblTester.testRunOnCluster()" name="testRunOnCluster" class="compbio.runner.disorder.DisemblTester"/>
67 <method signature="compbio.runner.disorder.DisemblTester.testRunOnClusterAsync()" name="testRunOnClusterAsync" class="compbio.runner.disorder.DisemblTester"/>
68 <method signature="compbio.runner.disorder.GlobPlotTester.readStatistics()" name="readStatistics" class="compbio.runner.disorder.GlobPlotTester"/>
69 <method signature="compbio.runner.disorder.GlobPlotTester.testConfigurationLoading()" name="testConfigurationLoading" class="compbio.runner.disorder.GlobPlotTester"/>
70 <method signature="compbio.runner.disorder.GlobPlotTester.testPersistance()" name="testPersistance" class="compbio.runner.disorder.GlobPlotTester"/>
71 <method signature="compbio.runner.disorder.GlobPlotTester.testRunLocally()" name="testRunLocally" class="compbio.runner.disorder.GlobPlotTester"/>
72 <method signature="compbio.runner.disorder.GlobPlotTester.testRunOnCluster()" name="testRunOnCluster" class="compbio.runner.disorder.GlobPlotTester"/>
73 <method signature="compbio.runner.disorder.GlobPlotTester.testRunOnClusterAsync()" name="testRunOnClusterAsync" class="compbio.runner.disorder.GlobPlotTester"/>
74 <method signature="compbio.runner.disorder.IUPredTester.testConfigurationLoading()" name="testConfigurationLoading" class="compbio.runner.disorder.IUPredTester"/>
75 <method signature="compbio.runner.disorder.IUPredTester.testPersistance()" name="testPersistance" class="compbio.runner.disorder.IUPredTester"/>
76 <method signature="compbio.runner.disorder.IUPredTester.testReadResults()" name="testReadResults" class="compbio.runner.disorder.IUPredTester"/>
77 <method signature="compbio.runner.disorder.IUPredTester.testRunLocally()" name="testRunLocally" class="compbio.runner.disorder.IUPredTester"/>
78 <method signature="compbio.runner.disorder.IUPredTester.testRunLocallyWithParams()" name="testRunLocallyWithParams" class="compbio.runner.disorder.IUPredTester"/>
79 <method signature="compbio.runner.disorder.IUPredTester.testRunOnCluster()" name="testRunOnCluster" class="compbio.runner.disorder.IUPredTester"/>
80 <method signature="compbio.runner.disorder.IUPredTester.testRunOnClusterAsync()" name="testRunOnClusterAsync" class="compbio.runner.disorder.IUPredTester"/>
81 <method signature="compbio.runner.disorder.IUPredTester.testSetParameter()" name="testSetParameter" class="compbio.runner.disorder.IUPredTester"/>
82 <method signature="compbio.runner.disorder.JronnTester.readStatistics()" name="readStatistics" class="compbio.runner.disorder.JronnTester"/>
83 <method signature="compbio.runner.disorder.JronnTester.testConfigurationLoading()" name="testConfigurationLoading" class="compbio.runner.disorder.JronnTester"/>
84 <method signature="compbio.runner.disorder.JronnTester.testPersistance()" name="testPersistance" class="compbio.runner.disorder.JronnTester"/>
85 <method signature="compbio.runner.disorder.JronnTester.testRunLocally()" name="testRunLocally" class="compbio.runner.disorder.JronnTester"/>
86 <method signature="compbio.runner.disorder.JronnTester.testRunLocallyOnTwoCpu()" name="testRunLocallyOnTwoCpu" class="compbio.runner.disorder.JronnTester"/>
87 <method signature="compbio.runner.disorder.JronnTester.testRunOnCluster()" name="testRunOnCluster" class="compbio.runner.disorder.JronnTester"/>
88 <method signature="compbio.runner.disorder.JronnTester.testRunOnClusterAsync()" name="testRunOnClusterAsync" class="compbio.runner.disorder.JronnTester"/>
89 <method signature="compbio.runner.msa.ClustalWParametersTester.testArguments()" name="testArguments" class="compbio.runner.msa.ClustalWParametersTester"/>
90 <method signature="compbio.runner.msa.ClustalWParametersTester.testConstrainedParametersMaxValues()" name="testConstrainedParametersMaxValues" class="compbio.runner.msa.ClustalWParametersTester"/>
91 <method signature="compbio.runner.msa.ClustalWParametersTester.testConstrainedParametersMinValues()" name="testConstrainedParametersMinValues" class="compbio.runner.msa.ClustalWParametersTester"/>
92 <method signature="compbio.runner.msa.ClustalWParametersTester.testConstrainedParametersRandomValues()" name="testConstrainedParametersRandomValues" class="compbio.runner.msa.ClustalWParametersTester"/>
93 <method signature="compbio.runner.msa.ClustalWParametersTester.testDefaultParameters()" name="testDefaultParameters" class="compbio.runner.msa.ClustalWParametersTester"/>
94 <method signature="compbio.runner.msa.ClustalWParametersTester.testOptions()" name="testOptions" class="compbio.runner.msa.ClustalWParametersTester"/>
95 <method signature="compbio.runner.msa.ClustalWParametersTester.testParameters()" name="testParameters" class="compbio.runner.msa.ClustalWParametersTester"/>
96 <method signature="compbio.runner.msa.ClustalWParametersTester.testPresets()" name="testPresets" class="compbio.runner.msa.ClustalWParametersTester"/>
97 <method signature="compbio.runner.msa.MafftParametersTester.testArguments()" name="testArguments" class="compbio.runner.msa.MafftParametersTester"/>
98 <method signature="compbio.runner.msa.MafftParametersTester.testConstrainedParametersMaxValues()" name="testConstrainedParametersMaxValues" class="compbio.runner.msa.MafftParametersTester"/>
99 <method signature="compbio.runner.msa.MafftParametersTester.testConstrainedParametersMinValues()" name="testConstrainedParametersMinValues" class="compbio.runner.msa.MafftParametersTester"/>
100 <method signature="compbio.runner.msa.MafftParametersTester.testConstrainedParametersRandomValues()" name="testConstrainedParametersRandomValues" class="compbio.runner.msa.MafftParametersTester"/>
101 <method signature="compbio.runner.msa.MafftParametersTester.testDefaultParameters()" name="testDefaultParameters" class="compbio.runner.msa.MafftParametersTester"/>
102 <method signature="compbio.runner.msa.MafftParametersTester.testOptions()" name="testOptions" class="compbio.runner.msa.MafftParametersTester"/>
103 <method signature="compbio.runner.msa.MafftParametersTester.testParameters()" name="testParameters" class="compbio.runner.msa.MafftParametersTester"/>
104 <method signature="compbio.runner.msa.MafftParametersTester.testPresets()" name="testPresets" class="compbio.runner.msa.MafftParametersTester"/>
105 <method signature="compbio.runner.msa.MafftTester.readStatistics()" name="readStatistics" class="compbio.runner.msa.MafftTester"/>
106 <method signature="compbio.runner.msa.MafftTester.testClusterExecute()" name="testClusterExecute" class="compbio.runner.msa.MafftTester"/>
107 <method signature="compbio.runner.msa.MafftTester.testConfigurationLoading()" name="testConfigurationLoading" class="compbio.runner.msa.MafftTester"/>
108 <method signature="compbio.runner.msa.MafftTester.testExecute()" name="testExecute" class="compbio.runner.msa.MafftTester"/>
109 <method signature="compbio.runner.msa.MafftTester.testPersistance()" name="testPersistance" class="compbio.runner.msa.MafftTester"/>
110 <method signature="compbio.runner.msa.MafftTester.testRunOnClusterAsyncCheckStatusLongPoolingTime()" name="testRunOnClusterAsyncCheckStatusLongPoolingTime" class="compbio.runner.msa.MafftTester"/>
111 <method signature="compbio.runner.msa.MafftTester.testSetInputTester()" name="testSetInputTester" class="compbio.runner.msa.MafftTester"/>
112 <method signature="compbio.runner.msa.MuscleParametersTester.testArguments()" name="testArguments" class="compbio.runner.msa.MuscleParametersTester"/>
113 <method signature="compbio.runner.msa.MuscleParametersTester.testConstrainedParametersMaxValues()" name="testConstrainedParametersMaxValues" class="compbio.runner.msa.MuscleParametersTester"/>
114 <method signature="compbio.runner.msa.MuscleParametersTester.testConstrainedParametersMinValues()" name="testConstrainedParametersMinValues" class="compbio.runner.msa.MuscleParametersTester"/>
115 <method signature="compbio.runner.msa.MuscleParametersTester.testConstrainedParametersRandomValues()" name="testConstrainedParametersRandomValues" class="compbio.runner.msa.MuscleParametersTester"/>
116 <method signature="compbio.runner.msa.MuscleParametersTester.testDefaultParameters()" name="testDefaultParameters" class="compbio.runner.msa.MuscleParametersTester"/>
117 <method signature="compbio.runner.msa.MuscleParametersTester.testOptions()" name="testOptions" class="compbio.runner.msa.MuscleParametersTester"/>
118 <method signature="compbio.runner.msa.MuscleParametersTester.testParameters()" name="testParameters" class="compbio.runner.msa.MuscleParametersTester"/>
119 <method signature="compbio.runner.msa.MuscleParametersTester.testPresets()" name="testPresets" class="compbio.runner.msa.MuscleParametersTester"/>
120 <method signature="compbio.runner.msa.MuscleTester.readStatistics()" name="readStatistics" class="compbio.runner.msa.MuscleTester"/>
121 <method signature="compbio.runner.msa.MuscleTester.testConfigurationLoading()" name="testConfigurationLoading" class="compbio.runner.msa.MuscleTester"/>
122 <method signature="compbio.runner.msa.MuscleTester.testPersistance()" name="testPersistance" class="compbio.runner.msa.MuscleTester"/>
123 <method signature="compbio.runner.msa.MuscleTester.testRunLocally()" name="testRunLocally" class="compbio.runner.msa.MuscleTester"/>
124 <method signature="compbio.runner.msa.MuscleTester.testRunOnCluster()" name="testRunOnCluster" class="compbio.runner.msa.MuscleTester"/>
125 <method signature="compbio.runner.msa.ProbconsParametersTester.testArguments()" name="testArguments" class="compbio.runner.msa.ProbconsParametersTester"/>
126 <method signature="compbio.runner.msa.ProbconsParametersTester.testConstrainedParametersMaxValues()" name="testConstrainedParametersMaxValues" class="compbio.runner.msa.ProbconsParametersTester"/>
127 <method signature="compbio.runner.msa.ProbconsParametersTester.testConstrainedParametersMinValues()" name="testConstrainedParametersMinValues" class="compbio.runner.msa.ProbconsParametersTester"/>
128 <method signature="compbio.runner.msa.ProbconsParametersTester.testConstrainedParametersRandomValues()" name="testConstrainedParametersRandomValues" class="compbio.runner.msa.ProbconsParametersTester"/>
129 <method signature="compbio.runner.msa.ProbconsParametersTester.testDefaultParameters()" name="testDefaultParameters" class="compbio.runner.msa.ProbconsParametersTester"/>
130 <method signature="compbio.runner.msa.ProbconsParametersTester.testOptions()" name="testOptions" class="compbio.runner.msa.ProbconsParametersTester"/>
131 <method signature="compbio.runner.msa.ProbconsParametersTester.testParameters()" name="testParameters" class="compbio.runner.msa.ProbconsParametersTester"/>
132 <method signature="compbio.runner.msa.ProbconsTester.readStatistics()" name="readStatistics" class="compbio.runner.msa.ProbconsTester"/>
133 <method signature="compbio.runner.msa.ProbconsTester.testClusterExecute()" name="testClusterExecute" class="compbio.runner.msa.ProbconsTester"/>
134 <method signature="compbio.runner.msa.ProbconsTester.testConfigurationLoading()" name="testConfigurationLoading" class="compbio.runner.msa.ProbconsTester"/>
135 <method signature="compbio.runner.msa.ProbconsTester.testExecute()" name="testExecute" class="compbio.runner.msa.ProbconsTester"/>
136 <method signature="compbio.runner.msa.ProbconsTester.testPersistance()" name="testPersistance" class="compbio.runner.msa.ProbconsTester"/>
137 <method signature="compbio.runner.msa.ProbconsTester.testSetInputTester()" name="testSetInputTester" class="compbio.runner.msa.ProbconsTester"/>
138 <method signature="compbio.runner.msa.TcoffeeParametersTester.testArguments()" name="testArguments" class="compbio.runner.msa.TcoffeeParametersTester"/>
139 <method signature="compbio.runner.msa.TcoffeeParametersTester.testConstrainedParametersMaxValues()" name="testConstrainedParametersMaxValues" class="compbio.runner.msa.TcoffeeParametersTester"/>
140 <method signature="compbio.runner.msa.TcoffeeParametersTester.testConstrainedParametersMinValues()" name="testConstrainedParametersMinValues" class="compbio.runner.msa.TcoffeeParametersTester"/>
141 <method signature="compbio.runner.msa.TcoffeeParametersTester.testConstrainedParametersRandomValues()" name="testConstrainedParametersRandomValues" class="compbio.runner.msa.TcoffeeParametersTester"/>
142 <method signature="compbio.runner.msa.TcoffeeParametersTester.testDefaultParameters()" name="testDefaultParameters" class="compbio.runner.msa.TcoffeeParametersTester"/>
143 <method signature="compbio.runner.msa.TcoffeeParametersTester.testOptions()" name="testOptions" class="compbio.runner.msa.TcoffeeParametersTester"/>
144 <method signature="compbio.runner.msa.TcoffeeParametersTester.testParameters()" name="testParameters" class="compbio.runner.msa.TcoffeeParametersTester"/>
145 <method signature="compbio.runner.msa.TcoffeeParametersTester.testPresets()" name="testPresets" class="compbio.runner.msa.TcoffeeParametersTester"/>
146 <method signature="compbio.runner.msa.TcoffeeTester.readStatistics()" name="readStatistics" class="compbio.runner.msa.TcoffeeTester"/>
147 <method signature="compbio.runner.msa.TcoffeeTester.testClusterExecute()" name="testClusterExecute" class="compbio.runner.msa.TcoffeeTester"/>
148 <method signature="compbio.runner.msa.TcoffeeTester.testConfigurationLoading()" name="testConfigurationLoading" class="compbio.runner.msa.TcoffeeTester"/>
149 <method signature="compbio.runner.msa.TcoffeeTester.testExecute()" name="testExecute" class="compbio.runner.msa.TcoffeeTester"/>
150 <method signature="compbio.runner.msa.TcoffeeTester.testNcore()" name="testNcore" class="compbio.runner.msa.TcoffeeTester"/>
151 <method signature="compbio.runner.msa.TcoffeeTester.testPersistance()" name="testPersistance" class="compbio.runner.msa.TcoffeeTester"/>
152 <method signature="compbio.runner.msa.ClustalWTester.testRunWithMatrix()" name="testRunWithMatrix" class="compbio.runner.msa.ClustalWTester"/>
153 <method signature="compbio.runner.msa.ClustalWTester.testConfigurationLoading()" name="testConfigurationLoading" class="compbio.runner.msa.ClustalWTester"/>
154 <method signature="compbio.runner.msa.ClustalWTester.testRunLocally()" name="testRunLocally" class="compbio.runner.msa.ClustalWTester"/>
155 <method signature="compbio.runner.msa.ClustalWTester.readStatisticsClusterExecution()" name="readStatisticsClusterExecution" class="compbio.runner.msa.ClustalWTester"/>
156 <method signature="compbio.runner.msa.ClustalWTester.testRunOnCluster()" name="testRunOnCluster" class="compbio.runner.msa.ClustalWTester"/>
157 <method signature="compbio.runner.msa.ClustalWTester.readStatistics()" name="readStatistics" class="compbio.runner.msa.ClustalWTester"/>
158 <method signature="compbio.runner.msa.ClustalWTester.testOptionsLocally()" name="testOptionsLocally" class="compbio.runner.msa.ClustalWTester"/>
159 <method signature="compbio.runner.msa.ClustalWTester.testPersistance()" name="testPersistance" class="compbio.runner.msa.ClustalWTester"/>
161 <group name="non_windows">
162 <method signature="compbio.runner.msa.MafftParametersTester.testArguments()" name="testArguments" class="compbio.runner.msa.MafftParametersTester"/>
163 <method signature="compbio.runner.msa.MafftParametersTester.testConstrainedParametersMaxValues()" name="testConstrainedParametersMaxValues" class="compbio.runner.msa.MafftParametersTester"/>
164 <method signature="compbio.runner.msa.MafftParametersTester.testConstrainedParametersMinValues()" name="testConstrainedParametersMinValues" class="compbio.runner.msa.MafftParametersTester"/>
165 <method signature="compbio.runner.msa.MafftParametersTester.testConstrainedParametersRandomValues()" name="testConstrainedParametersRandomValues" class="compbio.runner.msa.MafftParametersTester"/>
166 <method signature="compbio.runner.msa.MafftParametersTester.testDefaultParameters()" name="testDefaultParameters" class="compbio.runner.msa.MafftParametersTester"/>
167 <method signature="compbio.runner.msa.MafftParametersTester.testOptions()" name="testOptions" class="compbio.runner.msa.MafftParametersTester"/>
168 <method signature="compbio.runner.msa.MafftParametersTester.testParameters()" name="testParameters" class="compbio.runner.msa.MafftParametersTester"/>
169 <method signature="compbio.runner.msa.MafftParametersTester.testPresets()" name="testPresets" class="compbio.runner.msa.MafftParametersTester"/>
170 <method signature="compbio.runner.msa.MafftTester.readStatistics()" name="readStatistics" class="compbio.runner.msa.MafftTester"/>
171 <method signature="compbio.runner.msa.MafftTester.testClusterExecute()" name="testClusterExecute" class="compbio.runner.msa.MafftTester"/>
172 <method signature="compbio.runner.msa.MafftTester.testExecute()" name="testExecute" class="compbio.runner.msa.MafftTester"/>
173 <method signature="compbio.runner.msa.MafftTester.testPersistance()" name="testPersistance" class="compbio.runner.msa.MafftTester"/>
174 <method signature="compbio.runner.msa.MafftTester.testRunOnClusterAsyncCheckStatusLongPoolingTime()" name="testRunOnClusterAsyncCheckStatusLongPoolingTime" class="compbio.runner.msa.MafftTester"/>
175 <method signature="compbio.runner.msa.MafftTester.testSetInputTester()" name="testSetInputTester" class="compbio.runner.msa.MafftTester"/>
176 <method signature="compbio.runner.msa.ProbconsParametersTester.testArguments()" name="testArguments" class="compbio.runner.msa.ProbconsParametersTester"/>
177 <method signature="compbio.runner.msa.ProbconsParametersTester.testConstrainedParametersMaxValues()" name="testConstrainedParametersMaxValues" class="compbio.runner.msa.ProbconsParametersTester"/>
178 <method signature="compbio.runner.msa.ProbconsParametersTester.testConstrainedParametersMinValues()" name="testConstrainedParametersMinValues" class="compbio.runner.msa.ProbconsParametersTester"/>
179 <method signature="compbio.runner.msa.ProbconsParametersTester.testConstrainedParametersRandomValues()" name="testConstrainedParametersRandomValues" class="compbio.runner.msa.ProbconsParametersTester"/>
180 <method signature="compbio.runner.msa.ProbconsParametersTester.testDefaultParameters()" name="testDefaultParameters" class="compbio.runner.msa.ProbconsParametersTester"/>
181 <method signature="compbio.runner.msa.ProbconsParametersTester.testOptions()" name="testOptions" class="compbio.runner.msa.ProbconsParametersTester"/>
182 <method signature="compbio.runner.msa.ProbconsParametersTester.testParameters()" name="testParameters" class="compbio.runner.msa.ProbconsParametersTester"/>
183 <method signature="compbio.runner.msa.ProbconsTester.readStatistics()" name="readStatistics" class="compbio.runner.msa.ProbconsTester"/>
184 <method signature="compbio.runner.msa.ProbconsTester.testClusterExecute()" name="testClusterExecute" class="compbio.runner.msa.ProbconsTester"/>
185 <method signature="compbio.runner.msa.ProbconsTester.testExecute()" name="testExecute" class="compbio.runner.msa.ProbconsTester"/>
186 <method signature="compbio.runner.msa.ProbconsTester.testPersistance()" name="testPersistance" class="compbio.runner.msa.ProbconsTester"/>
187 <method signature="compbio.runner.msa.ProbconsTester.testSetInputTester()" name="testSetInputTester" class="compbio.runner.msa.ProbconsTester"/>
188 <method signature="compbio.runner.msa.TcoffeeParametersTester.testArguments()" name="testArguments" class="compbio.runner.msa.TcoffeeParametersTester"/>
189 <method signature="compbio.runner.msa.TcoffeeParametersTester.testConstrainedParametersMaxValues()" name="testConstrainedParametersMaxValues" class="compbio.runner.msa.TcoffeeParametersTester"/>
190 <method signature="compbio.runner.msa.TcoffeeParametersTester.testConstrainedParametersMinValues()" name="testConstrainedParametersMinValues" class="compbio.runner.msa.TcoffeeParametersTester"/>
191 <method signature="compbio.runner.msa.TcoffeeParametersTester.testConstrainedParametersRandomValues()" name="testConstrainedParametersRandomValues" class="compbio.runner.msa.TcoffeeParametersTester"/>
192 <method signature="compbio.runner.msa.TcoffeeParametersTester.testDefaultParameters()" name="testDefaultParameters" class="compbio.runner.msa.TcoffeeParametersTester"/>
193 <method signature="compbio.runner.msa.TcoffeeParametersTester.testOptions()" name="testOptions" class="compbio.runner.msa.TcoffeeParametersTester"/>
194 <method signature="compbio.runner.msa.TcoffeeParametersTester.testParameters()" name="testParameters" class="compbio.runner.msa.TcoffeeParametersTester"/>
195 <method signature="compbio.runner.msa.TcoffeeParametersTester.testPresets()" name="testPresets" class="compbio.runner.msa.TcoffeeParametersTester"/>
196 <method signature="compbio.runner.msa.TcoffeeTester.readStatistics()" name="readStatistics" class="compbio.runner.msa.TcoffeeTester"/>
197 <method signature="compbio.runner.msa.TcoffeeTester.testClusterExecute()" name="testClusterExecute" class="compbio.runner.msa.TcoffeeTester"/>
198 <method signature="compbio.runner.msa.TcoffeeTester.testExecute()" name="testExecute" class="compbio.runner.msa.TcoffeeTester"/>
199 <method signature="compbio.runner.msa.TcoffeeTester.testNcore()" name="testNcore" class="compbio.runner.msa.TcoffeeTester"/>
200 <method signature="compbio.runner.msa.TcoffeeTester.testPersistance()" name="testPersistance" class="compbio.runner.msa.TcoffeeTester"/>
203 <test name="Ant test">
204 <class name="compbio.engine.client.CommandBuilderTester">
205 <test-method status="PASS" signature="testCommandBuilding()" name="testCommandBuilding" duration-ms="1" started-at="2011-06-23T10:35:12Z" finished-at="2011-06-23T10:35:12Z">
207 <test-method status="PASS" signature="testOptionsToCommand()" name="testOptionsToCommand" duration-ms="40" started-at="2011-06-23T10:35:12Z" finished-at="2011-06-23T10:35:12Z">
209 <test-method status="PASS" signature="testSpaceDelimiterExecutable()" name="testSpaceDelimiterExecutable" duration-ms="0" started-at="2011-06-23T10:35:12Z" finished-at="2011-06-23T10:35:12Z">
212 <class name="compbio.runner._impl.NetNglycTester">
213 <test-method status="PASS" signature="testGetTestCommand()" name="testGetTestCommand" duration-ms="1" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
216 <class name="compbio.engine.EngineConfiguratorTester">
217 <test-method status="PASS" signature="testGetAsyncEngine()" name="testGetAsyncEngine" duration-ms="12" started-at="2011-06-23T10:35:07Z" finished-at="2011-06-23T10:35:07Z">
219 <test-method status="PASS" signature="testGetSyncEngine()" name="testGetSyncEngine" duration-ms="1" started-at="2011-06-23T10:35:07Z" finished-at="2011-06-23T10:35:07Z">
222 <class name="compbio.runner.disorder.GlobPlotTester">
223 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:37Z" finished-at="2011-06-23T10:36:37Z">
225 <test-method status="PASS" signature="readStatistics()" name="readStatistics" duration-ms="0" started-at="2011-06-23T10:36:37Z" finished-at="2011-06-23T10:36:37Z">
227 <test-method status="PASS" signature="testConfigurationLoading()" name="testConfigurationLoading" duration-ms="43" started-at="2011-06-23T10:36:37Z" finished-at="2011-06-23T10:36:37Z">
229 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:37Z" finished-at="2011-06-23T10:36:37Z">
231 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:37Z" finished-at="2011-06-23T10:36:37Z">
233 <test-method status="PASS" signature="testPersistance()" name="testPersistance" duration-ms="980" started-at="2011-06-23T10:36:37Z" finished-at="2011-06-23T10:36:38Z">
235 <test-method status="PASS" signature="testRunLocally()" name="testRunLocally" duration-ms="454" started-at="2011-06-23T10:36:38Z" finished-at="2011-06-23T10:36:38Z">
237 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:38Z" finished-at="2011-06-23T10:36:38Z">
239 <test-method status="PASS" signature="testRunOnCluster()" name="testRunOnCluster" duration-ms="2503" started-at="2011-06-23T10:36:38Z" finished-at="2011-06-23T10:36:41Z">
241 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:38Z" finished-at="2011-06-23T10:36:38Z">
243 <test-method status="PASS" signature="testRunOnClusterAsync()" name="testRunOnClusterAsync" duration-ms="6021" started-at="2011-06-23T10:36:41Z" finished-at="2011-06-23T10:36:47Z">
245 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:41Z" finished-at="2011-06-23T10:36:41Z">
248 <class name="compbio.stat.collector.ExecutionStatCollectorTester">
249 <test-method status="PASS" signature="testCollectStat()" name="testCollectStat" duration-ms="271" started-at="2011-06-23T10:41:52Z" finished-at="2011-06-23T10:41:52Z">
251 <test-method status="PASS" signature="testHasCompleted()" name="testHasCompleted" duration-ms="1" started-at="2011-06-23T10:41:52Z" finished-at="2011-06-23T10:41:52Z">
253 <test-method status="PASS" signature="testUpdateStatTester()" name="testUpdateStatTester" duration-ms="35012" started-at="2011-06-23T10:41:52Z" finished-at="2011-06-23T10:42:27Z">
256 <class name="compbio.engine.local.AsyncLocalRunnerTester">
257 <test-method status="PASS" signature="testAsyncCancelOperation()" name="testAsyncCancelOperation" duration-ms="17" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
259 <test-method status="PASS" signature="testAsyncRetrievOperation()" name="testAsyncRetrievOperation" duration-ms="124" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
261 <test-method status="PASS" signature="testCancelCompletedTaskLocally()" name="testCancelCompletedTaskLocally" duration-ms="3017" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:34Z">
263 <test-method status="PASS" signature="testCancelLocally()" name="testCancelLocally" duration-ms="13" started-at="2011-06-23T10:35:34Z" finished-at="2011-06-23T10:35:34Z">
264 <exception class="java.util.concurrent.CancellationException">
266 <![CDATA[java.util.concurrent.CancellationException
267 at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
268 at java.util.concurrent.FutureTask.get(FutureTask.java:83)
269 at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108)
270 at compbio.engine.local.AsyncLocalRunner.getResults(AsyncLocalRunner.java:130)
271 at compbio.engine.local.AsyncLocalRunnerTester.testCancelLocally(AsyncLocalRunnerTester.java:105)
272 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
273 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
274 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
275 at java.lang.reflect.Method.invoke(Method.java:597)
276 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
277 at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
278 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
279 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
280 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
281 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
282 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
283 at org.testng.TestRunner.privateRun(TestRunner.java:592)
284 at org.testng.TestRunner.run(TestRunner.java:486)
285 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
286 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
287 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
288 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
289 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
290 at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
291 at org.testng.TestNG.run(TestNG.java:784)
292 at org.testng.TestNG.privateMain(TestNG.java:949)
293 at org.testng.TestNG.main(TestNG.java:922)
298 <test-method status="PASS" signature="testGetStatus()" name="testGetStatus" duration-ms="19351" started-at="2011-06-23T10:35:34Z" finished-at="2011-06-23T10:35:54Z">
300 <test-method status="PASS" signature="testGetStatus()" name="testGetStatus" duration-ms="19362" started-at="2011-06-23T10:35:34Z" finished-at="2011-06-23T10:35:54Z">
302 <test-method status="PASS" signature="testGetStatus()" name="testGetStatus" duration-ms="19322" started-at="2011-06-23T10:35:34Z" finished-at="2011-06-23T10:35:54Z">
304 <test-method status="PASS" signature="testGetStatus()" name="testGetStatus" duration-ms="19358" started-at="2011-06-23T10:35:34Z" finished-at="2011-06-23T10:35:54Z">
306 <test-method status="PASS" signature="testGetStatus()" name="testGetStatus" duration-ms="19298" started-at="2011-06-23T10:35:54Z" finished-at="2011-06-23T10:36:13Z">
308 <test-method status="PASS" signature="testMultipleCancelLocally()" name="testMultipleCancelLocally" duration-ms="54" started-at="2011-06-23T10:36:13Z" finished-at="2011-06-23T10:36:13Z">
309 <exception class="java.util.concurrent.CancellationException">
311 <![CDATA[java.util.concurrent.CancellationException
312 at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
313 at java.util.concurrent.FutureTask.get(FutureTask.java:83)
314 at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108)
315 at compbio.engine.local.AsyncLocalRunner.getResults(AsyncLocalRunner.java:130)
316 at compbio.engine.local.AsyncLocalRunnerTester.testMultipleCancelLocally(AsyncLocalRunnerTester.java:239)
317 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
318 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
319 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
320 at java.lang.reflect.Method.invoke(Method.java:597)
321 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
322 at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
323 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
324 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
325 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
326 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
327 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
328 at org.testng.TestRunner.privateRun(TestRunner.java:592)
329 at org.testng.TestRunner.run(TestRunner.java:486)
330 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
331 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
332 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
333 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
334 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
335 at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
336 at org.testng.TestNG.run(TestNG.java:784)
337 at org.testng.TestNG.privateMain(TestNG.java:949)
338 at org.testng.TestNG.main(TestNG.java:922)
343 <test-method status="PASS" signature="testSubmitLocally()" name="testSubmitLocally" duration-ms="187" started-at="2011-06-23T10:36:13Z" finished-at="2011-06-23T10:36:13Z">
345 <test-method status="PASS" signature="testSubmitLocally()" name="testSubmitLocally" duration-ms="170" started-at="2011-06-23T10:36:13Z" finished-at="2011-06-23T10:36:13Z">
347 <test-method status="PASS" signature="testSubmitLocally()" name="testSubmitLocally" duration-ms="122" started-at="2011-06-23T10:36:13Z" finished-at="2011-06-23T10:36:13Z">
349 <test-method status="PASS" signature="testSubmitLocally()" name="testSubmitLocally" duration-ms="151" started-at="2011-06-23T10:36:13Z" finished-at="2011-06-23T10:36:13Z">
351 <test-method status="PASS" signature="testSubmitLocally()" name="testSubmitLocally" duration-ms="105" started-at="2011-06-23T10:36:13Z" finished-at="2011-06-23T10:36:13Z">
354 <class name="compbio.runner.msa.MafftTester">
355 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:38:49Z" finished-at="2011-06-23T10:38:49Z">
357 <test-method status="PASS" signature="readStatistics()" name="readStatistics" duration-ms="516" started-at="2011-06-23T10:38:49Z" finished-at="2011-06-23T10:38:49Z">
359 <test-method status="PASS" signature="testClusterExecute()" name="testClusterExecute" duration-ms="1264" started-at="2011-06-23T10:38:49Z" finished-at="2011-06-23T10:38:51Z">
361 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:38:49Z" finished-at="2011-06-23T10:38:49Z">
363 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:38:51Z" finished-at="2011-06-23T10:38:51Z">
365 <test-method status="PASS" signature="testConfigurationLoading()" name="testConfigurationLoading" duration-ms="62" started-at="2011-06-23T10:38:51Z" finished-at="2011-06-23T10:38:51Z">
367 <test-method status="PASS" signature="testExecute()" name="testExecute" duration-ms="162" started-at="2011-06-23T10:38:51Z" finished-at="2011-06-23T10:38:51Z">
369 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:38:51Z" finished-at="2011-06-23T10:38:51Z">
371 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:38:51Z" finished-at="2011-06-23T10:38:51Z">
373 <test-method status="PASS" signature="testPersistance()" name="testPersistance" duration-ms="305" started-at="2011-06-23T10:38:51Z" finished-at="2011-06-23T10:38:51Z">
375 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:38:51Z" finished-at="2011-06-23T10:38:51Z">
377 <test-method status="PASS" signature="testRunOnClusterAsyncCheckStatusLongPoolingTime()" name="testRunOnClusterAsyncCheckStatusLongPoolingTime" duration-ms="5535" started-at="2011-06-23T10:38:51Z" finished-at="2011-06-23T10:38:57Z">
379 <test-method status="PASS" signature="testSetInputTester()" name="testSetInputTester" duration-ms="0" started-at="2011-06-23T10:38:57Z" finished-at="2011-06-23T10:38:57Z">
381 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:38:57Z" finished-at="2011-06-23T10:38:57Z">
384 <class name="compbio.data.sequence.ClustalAlignmentUtilTester">
385 <test-method status="PASS" signature="testReadClustalFile()" name="testReadClustalFile" duration-ms="12" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
387 <test-method status="PASS" signature="testReadClustalFileLongNames()" name="testReadClustalFileLongNames" duration-ms="19" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
389 <test-method status="PASS" signature="testReadClustalFileShortNames()" name="testReadClustalFileShortNames" duration-ms="14" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
392 <class name="compbio.runner.disorder.IUPredTester">
393 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
395 <test-method status="PASS" signature="testConfigurationLoading()" name="testConfigurationLoading" duration-ms="69" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
397 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
399 <test-method status="PASS" signature="testPersistance()" name="testPersistance" duration-ms="308" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
401 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
403 <test-method status="PASS" signature="testReadResults()" name="testReadResults" duration-ms="25" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
405 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
407 <test-method status="PASS" signature="testRunLocally()" name="testRunLocally" duration-ms="196" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
409 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
411 <test-method status="PASS" signature="testRunLocallyWithParams()" name="testRunLocallyWithParams" duration-ms="71" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
413 <test-method status="PASS" signature="testRunOnCluster()" name="testRunOnCluster" duration-ms="3308" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:51Z">
415 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
417 <test-method status="PASS" signature="testRunOnClusterAsync()" name="testRunOnClusterAsync" duration-ms="6025" started-at="2011-06-23T10:36:51Z" finished-at="2011-06-23T10:36:57Z">
419 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:51Z" finished-at="2011-06-23T10:36:51Z">
421 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:57Z" finished-at="2011-06-23T10:36:57Z">
423 <test-method status="PASS" signature="testSetParameter()" name="testSetParameter" duration-ms="0" started-at="2011-06-23T10:36:57Z" finished-at="2011-06-23T10:36:57Z">
426 <class name="compbio.engine.client.PathValidatorTester">
427 <test-method status="PASS" signature="testGetClassPath()" name="testGetClassPath" duration-ms="1" started-at="2011-06-23T10:35:12Z" finished-at="2011-06-23T10:35:12Z">
429 <test-method status="PASS" signature="testIsAbsolutePath()" name="testIsAbsolutePath" duration-ms="0" started-at="2011-06-23T10:35:12Z" finished-at="2011-06-23T10:35:12Z">
432 <class name="compbio.stat.collector.StatDBTester">
433 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="11" started-at="2011-06-23T10:42:27Z" finished-at="2011-06-23T10:42:27Z">
435 <test-method status="PASS" signature="testVerifyJobsCount()" name="testVerifyJobsCount" duration-ms="412" started-at="2011-06-23T10:42:27Z" finished-at="2011-06-23T10:42:27Z">
438 <class name="compbio.stat.servlet.util.StatCollectionTester">
439 <test-method status="PASS" signature="testGetStats()" name="testGetStats" duration-ms="22" started-at="2011-06-23T10:42:27Z" finished-at="2011-06-23T10:42:27Z">
442 <class name="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester">
443 <test-method status="PASS" signature="testCancel()" name="testCancel" duration-ms="1538" started-at="2011-06-23T10:35:26Z" finished-at="2011-06-23T10:35:27Z">
445 <test-method status="PASS" signature="testSubmit()" name="testSubmit" duration-ms="3508" started-at="2011-06-23T10:35:27Z" finished-at="2011-06-23T10:35:31Z">
448 <class name="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester">
449 <test-method status="PASS" signature="testCancel()" name="testCancel" duration-ms="1257" started-at="2011-06-23T10:35:16Z" finished-at="2011-06-23T10:35:17Z">
450 <exception class="compbio.metadata.ResultNotAvailableException">
452 <![CDATA[java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/jaba2/local_jobsout/ClustalW#6405924652151282 with file name TO1381.clustal.cluster.out is not found!]]>
455 <![CDATA[compbio.metadata.ResultNotAvailableException: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/jaba2/local_jobsout/ClustalW#6405924652151282 with file name TO1381.clustal.cluster.out is not found!
456 at compbio.runner.msa.ClustalW.getResults(ClustalW.java:73)
457 at compbio.runner.msa.ClustalW.getResults(ClustalW.java:34)
458 at compbio.engine.client.ConfExecutable.getResults(ConfExecutable.java:207)
459 at compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testCancel(DrmaaAsyncClusterEngineTester.java:109)
460 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
461 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
462 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
463 at java.lang.reflect.Method.invoke(Method.java:597)
464 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
465 at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
466 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
467 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
468 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
469 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
470 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
471 at org.testng.TestRunner.privateRun(TestRunner.java:592)
472 at org.testng.TestRunner.run(TestRunner.java:486)
473 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
474 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
475 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
476 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
477 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
478 at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
479 at org.testng.TestNG.run(TestNG.java:784)
480 at org.testng.TestNG.privateMain(TestNG.java:949)
481 at org.testng.TestNG.main(TestNG.java:922)
482 Caused by: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/jaba2/local_jobsout/ClustalW#6405924652151282 with file name TO1381.clustal.cluster.out is not found!
483 at compbio.runner.Util.readClustalFile(Util.java:93)
484 at compbio.runner.msa.ClustalW.getResults(ClustalW.java:70)
490 <test-method status="PASS" signature="testGetJobStatus()" name="testGetJobStatus" duration-ms="4765" started-at="2011-06-23T10:35:17Z" finished-at="2011-06-23T10:35:22Z">
492 <test-method status="PASS" signature="testSubmit()" name="testSubmit" duration-ms="3976" started-at="2011-06-23T10:35:22Z" finished-at="2011-06-23T10:35:26Z">
495 <class name="compbio.runner.conservation.AAConTester">
496 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
498 <test-method status="PASS" signature="readStatistics()" name="readStatistics" duration-ms="1493" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:15Z">
500 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:36:15Z" finished-at="2011-06-23T10:36:15Z">
502 <test-method status="PASS" signature="testConfigurationLoading()" name="testConfigurationLoading" duration-ms="113" started-at="2011-06-23T10:36:15Z" finished-at="2011-06-23T10:36:15Z">
504 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:15Z" finished-at="2011-06-23T10:36:15Z">
506 <test-method status="PASS" signature="testPersistance()" name="testPersistance" duration-ms="775" started-at="2011-06-23T10:36:15Z" finished-at="2011-06-23T10:36:16Z">
508 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:36:16Z" finished-at="2011-06-23T10:36:16Z">
510 <test-method status="PASS" signature="testRunLocally()" name="testRunLocally" duration-ms="827" started-at="2011-06-23T10:36:16Z" finished-at="2011-06-23T10:36:17Z">
512 <test-method status="PASS" signature="testRunLocallyOnTwoCpu()" name="testRunLocallyOnTwoCpu" duration-ms="289" started-at="2011-06-23T10:36:17Z" finished-at="2011-06-23T10:36:17Z">
514 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:17Z" finished-at="2011-06-23T10:36:17Z">
516 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:36:17Z" finished-at="2011-06-23T10:36:17Z">
518 <test-method status="PASS" signature="testRunLocallyWithPreset()" name="testRunLocallyWithPreset" duration-ms="653" started-at="2011-06-23T10:36:17Z" finished-at="2011-06-23T10:36:18Z">
520 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:36:18Z" finished-at="2011-06-23T10:36:18Z">
522 <test-method status="PASS" signature="testRunOnCluster()" name="testRunOnCluster" duration-ms="3640" started-at="2011-06-23T10:36:18Z" finished-at="2011-06-23T10:36:22Z">
524 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:22Z" finished-at="2011-06-23T10:36:22Z">
526 <test-method status="PASS" signature="testRunOnClusterAsync()" name="testRunOnClusterAsync" duration-ms="5018" started-at="2011-06-23T10:36:22Z" finished-at="2011-06-23T10:36:27Z">
529 <class name="compbio.runner.disorder.DisemblTester">
530 <test-method status="PASS" signature="testConfigurationLoading()" name="testConfigurationLoading" duration-ms="44" started-at="2011-06-23T10:36:27Z" finished-at="2011-06-23T10:36:27Z">
532 <test-method status="PASS" signature="readStatistics()" name="readStatistics" duration-ms="0" started-at="2011-06-23T10:36:27Z" finished-at="2011-06-23T10:36:27Z">
534 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:27Z" finished-at="2011-06-23T10:36:27Z">
536 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:27Z" finished-at="2011-06-23T10:36:27Z">
538 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:36:27Z" finished-at="2011-06-23T10:36:27Z">
540 <test-method status="PASS" signature="testPersistance()" name="testPersistance" duration-ms="1297" started-at="2011-06-23T10:36:27Z" finished-at="2011-06-23T10:36:28Z">
542 <test-method status="PASS" signature="testRunLocally()" name="testRunLocally" duration-ms="579" started-at="2011-06-23T10:36:28Z" finished-at="2011-06-23T10:36:29Z">
544 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:28Z" finished-at="2011-06-23T10:36:28Z">
546 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:29Z" finished-at="2011-06-23T10:36:29Z">
548 <test-method status="PASS" signature="testRunOnCluster()" name="testRunOnCluster" duration-ms="2047" started-at="2011-06-23T10:36:29Z" finished-at="2011-06-23T10:36:31Z">
550 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:36:31Z" finished-at="2011-06-23T10:36:31Z">
552 <test-method status="PASS" signature="testRunOnClusterAsync()" name="testRunOnClusterAsync" duration-ms="6011" started-at="2011-06-23T10:36:31Z" finished-at="2011-06-23T10:36:37Z">
555 <class name="compbio.runner._impl.RPSBlastTester">
556 <test-method status="PASS" signature="testGetTestCommand()" name="testGetTestCommand" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
558 <test-method status="PASS" signature="testGetTestArgsCommand()" name="testGetTestArgsCommand" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
561 <class name="compbio.engine.PulledFileCacheTester">
562 <test-method status="PASS" signature="test()" name="test" duration-ms="5011" started-at="2011-06-23T10:35:07Z" finished-at="2011-06-23T10:35:12Z">
565 <class name="compbio.runner._impl.MclTester">
566 <test-method status="PASS" signature="testGetTestCommand()" name="testGetTestCommand" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
569 <class name="compbio.engine.cluster.dundee._QueueTester">
570 <test-method status="PASS" signature="testQueue()" name="testQueue" duration-ms="0" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
573 <class name="compbio.engine.LoadBalancerTester">
574 <test-method status="PASS" signature="testLoadBalance()" name="testLoadBalance" duration-ms="57" started-at="2011-06-23T10:35:07Z" finished-at="2011-06-23T10:35:07Z">
577 <class name="compbio.runner.msa.ProbconsParametersTester">
578 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="36" started-at="2011-06-23T10:39:16Z" finished-at="2011-06-23T10:39:16Z">
580 <test-method status="PASS" signature="testArguments()" name="testArguments" duration-ms="1819" started-at="2011-06-23T10:39:16Z" finished-at="2011-06-23T10:39:17Z">
582 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="22" started-at="2011-06-23T10:39:17Z" finished-at="2011-06-23T10:39:17Z">
584 <test-method status="PASS" signature="testConfiguration()" name="testConfiguration" duration-ms="0" started-at="2011-06-23T10:39:17Z" finished-at="2011-06-23T10:39:17Z">
586 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="20" started-at="2011-06-23T10:39:17Z" finished-at="2011-06-23T10:39:18Z">
588 <test-method status="PASS" signature="testConstrainedParametersMaxValues()" name="testConstrainedParametersMaxValues" duration-ms="37102" started-at="2011-06-23T10:39:18Z" finished-at="2011-06-23T10:39:55Z">
590 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="22" started-at="2011-06-23T10:39:55Z" finished-at="2011-06-23T10:39:55Z">
592 <test-method status="PASS" signature="testConstrainedParametersMinValues()" name="testConstrainedParametersMinValues" duration-ms="768" started-at="2011-06-23T10:39:55Z" finished-at="2011-06-23T10:39:55Z">
594 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="22" started-at="2011-06-23T10:39:55Z" finished-at="2011-06-23T10:39:55Z">
596 <test-method status="PASS" signature="testConstrainedParametersRandomValues()" name="testConstrainedParametersRandomValues" duration-ms="70319" started-at="2011-06-23T10:39:55Z" finished-at="2011-06-23T10:41:06Z">
598 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="22" started-at="2011-06-23T10:41:06Z" finished-at="2011-06-23T10:41:06Z">
600 <test-method status="PASS" signature="testDefaultParameters()" name="testDefaultParameters" duration-ms="4845" started-at="2011-06-23T10:41:06Z" finished-at="2011-06-23T10:41:11Z">
602 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="21" started-at="2011-06-23T10:41:11Z" finished-at="2011-06-23T10:41:11Z">
604 <test-method status="PASS" signature="testOptions()" name="testOptions" duration-ms="443" started-at="2011-06-23T10:41:11Z" finished-at="2011-06-23T10:41:11Z">
606 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="22" started-at="2011-06-23T10:41:11Z" finished-at="2011-06-23T10:41:11Z">
608 <test-method status="PASS" signature="testParameters()" name="testParameters" duration-ms="1344" started-at="2011-06-23T10:41:11Z" finished-at="2011-06-23T10:41:12Z">
611 <class name="compbio.metadata.RunnerConfigTester">
612 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="14" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
614 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="14" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
616 <test-method status="PASS" signature="testCreateNumParameterWithoutValidValue()" name="testCreateNumParameterWithoutValidValue" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
617 <exception class="java.lang.IllegalStateException">
619 <![CDATA[Attempting to set default value for parameter: Option name: Matrix
620 Description: DNA weight matrix
624 Without possible values! Please define possible value first!]]>
627 <![CDATA[java.lang.IllegalStateException: Attempting to set default value for parameter: Option name: Matrix
628 Description: DNA weight matrix
632 Without possible values! Please define possible value first!
633 at compbio.metadata.Parameter.setDefaultValue(Parameter.java:234)
634 at compbio.metadata.RunnerConfigTester.testCreateNumParameterWithoutValidValue(RunnerConfigTester.java:222)
635 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
636 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
637 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
638 at java.lang.reflect.Method.invoke(Method.java:597)
639 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
640 at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
641 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
642 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
643 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
644 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
645 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
646 at org.testng.TestRunner.privateRun(TestRunner.java:592)
647 at org.testng.TestRunner.run(TestRunner.java:486)
648 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
649 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
650 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
651 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
652 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
653 at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
654 at org.testng.TestNG.run(TestNG.java:784)
655 at org.testng.TestNG.privateMain(TestNG.java:949)
656 at org.testng.TestNG.main(TestNG.java:922)
661 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="14" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
663 <test-method status="PASS" signature="testCreateParameter()" name="testCreateParameter" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
664 <exception class="compbio.metadata.WrongParameterException">
666 <![CDATA[Attempting to set illegal value 'pam22' for the parameter: Option name: Matrix1
667 Description: Protein weight matrix
668 URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html
681 <![CDATA[compbio.metadata.WrongParameterException: Attempting to set illegal value 'pam22' for the parameter: Option name: Matrix1
682 Description: Protein weight matrix
683 URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html
694 at compbio.metadata.Parameter.setDefaultValue(Parameter.java:240)
695 at compbio.metadata.RunnerConfigTester.testCreateParameter(RunnerConfigTester.java:93)
696 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
697 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
698 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
699 at java.lang.reflect.Method.invoke(Method.java:597)
700 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
701 at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
702 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
703 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
704 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
705 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
706 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
707 at org.testng.TestRunner.privateRun(TestRunner.java:592)
708 at org.testng.TestRunner.run(TestRunner.java:486)
709 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
710 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
711 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
712 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
713 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
714 at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
715 at org.testng.TestNG.run(TestNG.java:784)
716 at org.testng.TestNG.privateMain(TestNG.java:949)
717 at org.testng.TestNG.main(TestNG.java:922)
722 <test-method status="PASS" signature="testCreateParameterWithValidValueConstrain()" name="testCreateParameterWithValidValueConstrain" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
724 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="14" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
726 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="14" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
728 <test-method status="PASS" signature="testOptionNoDefaultValidate()" name="testOptionNoDefaultValidate" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
729 <exception class="javax.xml.bind.ValidationException">
731 <![CDATA[Default value is required as multiple optionNames are defined for option: Option name: Matrix1
732 Description: Protein weight matrix
733 URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html
742 <![CDATA[javax.xml.bind.ValidationException: Default value is required as multiple optionNames are defined for option: Option name: Matrix1
743 Description: Protein weight matrix
744 URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html
751 at compbio.metadata.Option.validate(Option.java:317)
752 at compbio.metadata.RunnerConfigTester.testOptionNoDefaultValidate(RunnerConfigTester.java:149)
753 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
754 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
755 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
756 at java.lang.reflect.Method.invoke(Method.java:597)
757 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
758 at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
759 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
760 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
761 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
762 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
763 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
764 at org.testng.TestRunner.privateRun(TestRunner.java:592)
765 at org.testng.TestRunner.run(TestRunner.java:486)
766 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
767 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
768 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
769 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
770 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
771 at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
772 at org.testng.TestNG.run(TestNG.java:784)
773 at org.testng.TestNG.privateMain(TestNG.java:949)
774 at org.testng.TestNG.main(TestNG.java:922)
779 <test-method status="PASS" signature="testOptionSetInvalidValue()" name="testOptionSetInvalidValue" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
780 <exception class="compbio.metadata.WrongParameterException">
782 <![CDATA[Attempting to set illegal defaultValue 'AAA' which is not defined optionNames for option: Option name: Matrix1
783 Description: Protein weight matrix
784 URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html
793 <![CDATA[compbio.metadata.WrongParameterException: Attempting to set illegal defaultValue 'AAA' which is not defined optionNames for option: Option name: Matrix1
794 Description: Protein weight matrix
795 URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html
802 at compbio.metadata.Option.setDefaultValue(Option.java:130)
803 at compbio.metadata.RunnerConfigTester.testOptionSetInvalidValue(RunnerConfigTester.java:172)
804 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
805 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
806 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
807 at java.lang.reflect.Method.invoke(Method.java:597)
808 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
809 at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
810 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
811 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
812 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
813 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
814 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
815 at org.testng.TestRunner.privateRun(TestRunner.java:592)
816 at org.testng.TestRunner.run(TestRunner.java:486)
817 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
818 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
819 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
820 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
821 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
822 at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
823 at org.testng.TestNG.run(TestNG.java:784)
824 at org.testng.TestNG.privateMain(TestNG.java:949)
825 at org.testng.TestNG.main(TestNG.java:922)
830 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="13" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
832 <test-method status="PASS" signature="testOptionToCommand()" name="testOptionToCommand" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
834 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="13" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
836 <test-method status="PASS" signature="testParameterToCommand()" name="testParameterToCommand" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
838 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="13" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
840 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="14" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
842 <test-method status="PASS" signature="testValidate()" name="testValidate" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
844 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="13" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
846 <test-method status="PASS" signature="testValidateBoundaryConstrainCheck()" name="testValidateBoundaryConstrainCheck" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
848 <test-method status="PASS" signature="testValidateLowerBoundaryConstrainCheck()" name="testValidateLowerBoundaryConstrainCheck" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
849 <exception class="compbio.metadata.WrongParameterException">
851 <![CDATA[Attempting to set default value outside boundaries defined by the constraint: Type: Float
855 For parameter: Option name: Matrix1
856 Description: Protein weight matrix
857 URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html
868 <![CDATA[compbio.metadata.WrongParameterException: Attempting to set default value outside boundaries defined by the constraint: Type: Float
872 For parameter: Option name: Matrix1
873 Description: Protein weight matrix
874 URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html
883 at compbio.metadata.Parameter.setDefaultValue(Parameter.java:248)
884 at compbio.metadata.RunnerConfigTester.testValidateLowerBoundaryConstrainCheck(RunnerConfigTester.java:268)
885 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
886 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
887 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
888 at java.lang.reflect.Method.invoke(Method.java:597)
889 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
890 at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
891 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
892 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
893 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
894 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
895 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
896 at org.testng.TestRunner.privateRun(TestRunner.java:592)
897 at org.testng.TestRunner.run(TestRunner.java:486)
898 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
899 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
900 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
901 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
902 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
903 at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
904 at org.testng.TestNG.run(TestNG.java:784)
905 at org.testng.TestNG.privateMain(TestNG.java:949)
906 at org.testng.TestNG.main(TestNG.java:922)
911 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="13" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
913 <test-method status="PASS" signature="testValidateUpperBoundaryConstrainCheck()" name="testValidateUpperBoundaryConstrainCheck" duration-ms="1" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
914 <exception class="compbio.metadata.WrongParameterException">
916 <![CDATA[Attempting to set default value outside boundaries defined by the constraint: Type: Float
920 For parameter: Option name: Matrix1
921 Description: Protein weight matrix
922 URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html
933 <![CDATA[compbio.metadata.WrongParameterException: Attempting to set default value outside boundaries defined by the constraint: Type: Float
937 For parameter: Option name: Matrix1
938 Description: Protein weight matrix
939 URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html
948 at compbio.metadata.Parameter.setDefaultValue(Parameter.java:248)
949 at compbio.metadata.RunnerConfigTester.testValidateUpperBoundaryConstrainCheck(RunnerConfigTester.java:296)
950 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
951 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
952 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
953 at java.lang.reflect.Method.invoke(Method.java:597)
954 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
955 at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
956 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
957 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
958 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
959 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
960 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
961 at org.testng.TestRunner.privateRun(TestRunner.java:592)
962 at org.testng.TestRunner.run(TestRunner.java:486)
963 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
964 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
965 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
966 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
967 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
968 at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
969 at org.testng.TestNG.run(TestNG.java:784)
970 at org.testng.TestNG.privateMain(TestNG.java:949)
971 at org.testng.TestNG.main(TestNG.java:922)
976 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="13" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
978 <test-method status="PASS" signature="testValidateValueConstrain()" name="testValidateValueConstrain" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
979 <exception class="javax.xml.bind.ValidationException">
981 <![CDATA[Both boundaries (min and max) is undefined for ValueConstrain: Type: Float
985 <![CDATA[javax.xml.bind.ValidationException: Both boundaries (min and max) is undefined for ValueConstrain: Type: Float
987 at compbio.metadata.ValueConstrain.validate(ValueConstrain.java:208)
988 at compbio.metadata.RunnerConfigTester.testValidateValueConstrain(RunnerConfigTester.java:341)
989 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
990 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
991 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
992 at java.lang.reflect.Method.invoke(Method.java:597)
993 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
994 at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
995 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
996 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
997 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
998 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
999 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
1000 at org.testng.TestRunner.privateRun(TestRunner.java:592)
1001 at org.testng.TestRunner.run(TestRunner.java:486)
1002 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
1003 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
1004 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
1005 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
1006 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
1007 at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
1008 at org.testng.TestNG.run(TestNG.java:784)
1009 at org.testng.TestNG.privateMain(TestNG.java:949)
1010 at org.testng.TestNG.main(TestNG.java:922)
1016 <class name="compbio.runner.msa.MafftParametersTester">
1017 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="39" started-at="2011-06-23T10:38:32Z" finished-at="2011-06-23T10:38:32Z">
1019 <test-method status="PASS" signature="testArguments()" name="testArguments" duration-ms="3027" started-at="2011-06-23T10:38:32Z" finished-at="2011-06-23T10:38:35Z">
1021 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="67" started-at="2011-06-23T10:38:35Z" finished-at="2011-06-23T10:38:35Z">
1023 <test-method status="PASS" signature="testConfiguration()" name="testConfiguration" duration-ms="0" started-at="2011-06-23T10:38:35Z" finished-at="2011-06-23T10:38:35Z">
1025 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="37" started-at="2011-06-23T10:38:35Z" finished-at="2011-06-23T10:38:35Z">
1027 <test-method status="PASS" signature="testConstrainedParametersMaxValues()" name="testConstrainedParametersMaxValues" duration-ms="1461" started-at="2011-06-23T10:38:35Z" finished-at="2011-06-23T10:38:37Z">
1029 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="38" started-at="2011-06-23T10:38:37Z" finished-at="2011-06-23T10:38:37Z">
1031 <test-method status="PASS" signature="testConstrainedParametersMinValues()" name="testConstrainedParametersMinValues" duration-ms="886" started-at="2011-06-23T10:38:37Z" finished-at="2011-06-23T10:38:37Z">
1033 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="37" started-at="2011-06-23T10:38:37Z" finished-at="2011-06-23T10:38:38Z">
1035 <test-method status="PASS" signature="testConstrainedParametersRandomValues()" name="testConstrainedParametersRandomValues" duration-ms="3530" started-at="2011-06-23T10:38:38Z" finished-at="2011-06-23T10:38:41Z">
1037 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="37" started-at="2011-06-23T10:38:41Z" finished-at="2011-06-23T10:38:41Z">
1039 <test-method status="PASS" signature="testDefaultParameters()" name="testDefaultParameters" duration-ms="4507" started-at="2011-06-23T10:38:41Z" finished-at="2011-06-23T10:38:46Z">
1041 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="34" started-at="2011-06-23T10:38:46Z" finished-at="2011-06-23T10:38:46Z">
1043 <test-method status="PASS" signature="testOptions()" name="testOptions" duration-ms="971" started-at="2011-06-23T10:38:46Z" finished-at="2011-06-23T10:38:47Z">
1045 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="40" started-at="2011-06-23T10:38:47Z" finished-at="2011-06-23T10:38:47Z">
1047 <test-method status="PASS" signature="testParameters()" name="testParameters" duration-ms="1179" started-at="2011-06-23T10:38:47Z" finished-at="2011-06-23T10:38:48Z">
1049 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="36" started-at="2011-06-23T10:38:48Z" finished-at="2011-06-23T10:38:48Z">
1051 <test-method status="PASS" signature="testPresets()" name="testPresets" duration-ms="965" started-at="2011-06-23T10:38:48Z" finished-at="2011-06-23T10:38:49Z">
1054 <class name="compbio.runner.disorder.JronnTester">
1055 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:57Z" finished-at="2011-06-23T10:36:57Z">
1057 <test-method status="PASS" signature="readStatistics()" name="readStatistics" duration-ms="18639" started-at="2011-06-23T10:36:57Z" finished-at="2011-06-23T10:37:15Z">
1059 <test-method status="PASS" signature="testConfigurationLoading()" name="testConfigurationLoading" duration-ms="45" started-at="2011-06-23T10:37:15Z" finished-at="2011-06-23T10:37:15Z">
1061 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:37:15Z" finished-at="2011-06-23T10:37:15Z">
1063 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:37:15Z" finished-at="2011-06-23T10:37:15Z">
1065 <test-method status="PASS" signature="testPersistance()" name="testPersistance" duration-ms="18613" started-at="2011-06-23T10:37:15Z" finished-at="2011-06-23T10:37:34Z">
1067 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:37:34Z" finished-at="2011-06-23T10:37:34Z">
1069 <test-method status="PASS" signature="testRunLocally()" name="testRunLocally" duration-ms="18541" started-at="2011-06-23T10:37:34Z" finished-at="2011-06-23T10:37:52Z">
1071 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:37:52Z" finished-at="2011-06-23T10:37:52Z">
1073 <test-method status="PASS" signature="testRunLocallyOnTwoCpu()" name="testRunLocallyOnTwoCpu" duration-ms="7131" started-at="2011-06-23T10:37:52Z" finished-at="2011-06-23T10:38:00Z">
1075 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:38:00Z" finished-at="2011-06-23T10:38:00Z">
1077 <test-method status="PASS" signature="testRunOnCluster()" name="testRunOnCluster" duration-ms="13058" started-at="2011-06-23T10:38:00Z" finished-at="2011-06-23T10:38:13Z">
1079 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:38:13Z" finished-at="2011-06-23T10:38:13Z">
1081 <test-method status="PASS" signature="testRunOnClusterAsync()" name="testRunOnClusterAsync" duration-ms="11022" started-at="2011-06-23T10:38:13Z" finished-at="2011-06-23T10:38:24Z">
1084 <class name="compbio.runner._impl.RonnTester">
1085 <test-method status="PASS" signature="testGetTestCommand()" name="testGetTestCommand" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
1088 <class name="compbio.runner.msa.ProbconsTester">
1089 <test-method status="PASS" signature="readStatistics()" name="readStatistics" duration-ms="455" started-at="2011-06-23T10:41:12Z" finished-at="2011-06-23T10:41:13Z">
1091 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:41:12Z" finished-at="2011-06-23T10:41:12Z">
1093 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:41:13Z" finished-at="2011-06-23T10:41:13Z">
1095 <test-method status="PASS" signature="testClusterExecute()" name="testClusterExecute" duration-ms="2710" started-at="2011-06-23T10:41:13Z" finished-at="2011-06-23T10:41:16Z">
1097 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:41:16Z" finished-at="2011-06-23T10:41:16Z">
1099 <test-method status="PASS" signature="testConfigurationLoading()" name="testConfigurationLoading" duration-ms="89" started-at="2011-06-23T10:41:16Z" finished-at="2011-06-23T10:41:16Z">
1101 <test-method status="PASS" signature="testExecute()" name="testExecute" duration-ms="455" started-at="2011-06-23T10:41:16Z" finished-at="2011-06-23T10:41:16Z">
1103 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:41:16Z" finished-at="2011-06-23T10:41:16Z">
1105 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:41:16Z" finished-at="2011-06-23T10:41:16Z">
1107 <test-method status="PASS" signature="testPersistance()" name="testPersistance" duration-ms="527" started-at="2011-06-23T10:41:16Z" finished-at="2011-06-23T10:41:17Z">
1109 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:41:17Z" finished-at="2011-06-23T10:41:17Z">
1111 <test-method status="PASS" signature="testSetInputTester()" name="testSetInputTester" duration-ms="0" started-at="2011-06-23T10:41:17Z" finished-at="2011-06-23T10:41:17Z">
1114 <class name="compbio.engine.conf.PropertyHelperManagerTester">
1115 <test-method status="PASS" signature="testLoadResources()" name="testLoadResources" is-config="true" duration-ms="3" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1117 <test-method status="PASS" signature="testClusterEngineConf()" name="testClusterEngineConf" duration-ms="1" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1119 <test-method status="PASS" signature="validateClustalConfiguration()" name="validateClustalConfiguration" duration-ms="0" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1121 <test-method status="PASS" signature="validateMafftConfiguration()" name="validateMafftConfiguration" duration-ms="2" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1123 <test-method status="PASS" signature="validateMuscleConfiguration()" name="validateMuscleConfiguration" duration-ms="0" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1125 <test-method status="PASS" signature="validateTcoffeeConfiguration()" name="validateTcoffeeConfiguration" duration-ms="0" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1128 <class name="compbio.metadata.OptionCombinatorTester">
1129 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="109" started-at="2011-06-23T10:36:13Z" finished-at="2011-06-23T10:36:13Z">
1131 <test-method status="PASS" signature="testgetAllOptions()" name="testgetAllOptions" duration-ms="1" started-at="2011-06-23T10:36:13Z" finished-at="2011-06-23T10:36:13Z">
1133 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="101" started-at="2011-06-23T10:36:13Z" finished-at="2011-06-23T10:36:14Z">
1135 <test-method status="PASS" signature="testgetAllParameters()" name="testgetAllParameters" duration-ms="3" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
1138 <class name="compbio.engine.FilePullerTester">
1139 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="298" started-at="2011-06-23T10:34:54Z" finished-at="2011-06-23T10:34:54Z">
1141 <test-method status="PASS" signature="loadPresets()" name="loadPresets" is-config="true" duration-ms="62" started-at="2011-06-23T10:34:54Z" finished-at="2011-06-23T10:34:54Z">
1143 <test-method status="PASS" signature="testPull()" name="testPull" duration-ms="14" started-at="2011-06-23T10:34:54Z" finished-at="2011-06-23T10:34:54Z">
1145 <test-method status="PASS" signature="testCache()" name="testCache" duration-ms="6008" started-at="2011-06-23T10:34:54Z" depends-on-methods="compbio.engine.FilePullerTester.testPull" finished-at="2011-06-23T10:35:00Z">
1147 <test-method status="PASS" signature="testGetDelay()" name="testGetDelay" duration-ms="0" started-at="2011-06-23T10:35:07Z" finished-at="2011-06-23T10:35:07Z">
1149 <test-method status="PASS" signature="testGet()" name="testGet" duration-ms="2" started-at="2011-06-23T10:35:07Z" finished-at="2011-06-23T10:35:07Z">
1152 <class name="compbio.runner.msa.MuscleTester">
1153 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:39:11Z" finished-at="2011-06-23T10:39:11Z">
1155 <test-method status="PASS" signature="readStatistics()" name="readStatistics" duration-ms="520" started-at="2011-06-23T10:39:11Z" finished-at="2011-06-23T10:39:11Z">
1157 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:39:11Z" finished-at="2011-06-23T10:39:11Z">
1159 <test-method status="PASS" signature="testConfigurationLoading()" name="testConfigurationLoading" duration-ms="43" started-at="2011-06-23T10:39:11Z" finished-at="2011-06-23T10:39:11Z">
1161 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:39:11Z" finished-at="2011-06-23T10:39:11Z">
1163 <test-method status="PASS" signature="testPersistance()" name="testPersistance" duration-ms="233" started-at="2011-06-23T10:39:11Z" finished-at="2011-06-23T10:39:12Z">
1165 <test-method status="PASS" signature="testRunLocally()" name="testRunLocally" duration-ms="100" started-at="2011-06-23T10:39:12Z" finished-at="2011-06-23T10:39:12Z">
1167 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:39:12Z" finished-at="2011-06-23T10:39:12Z">
1169 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:39:12Z" finished-at="2011-06-23T10:39:12Z">
1171 <test-method status="PASS" signature="testRunOnCluster()" name="testRunOnCluster" duration-ms="3867" started-at="2011-06-23T10:39:12Z" finished-at="2011-06-23T10:39:16Z">
1174 <class name="compbio.runner.msa.TcoffeeTester">
1175 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:41:45Z" finished-at="2011-06-23T10:41:45Z">
1177 <test-method status="PASS" signature="readStatistics()" name="readStatistics" duration-ms="516" started-at="2011-06-23T10:41:45Z" finished-at="2011-06-23T10:41:46Z">
1179 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:41:46Z" finished-at="2011-06-23T10:41:46Z">
1181 <test-method status="PASS" signature="testClusterExecute()" name="testClusterExecute" duration-ms="5084" started-at="2011-06-23T10:41:46Z" finished-at="2011-06-23T10:41:51Z">
1183 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:41:51Z" finished-at="2011-06-23T10:41:51Z">
1185 <test-method status="PASS" signature="testConfigurationLoading()" name="testConfigurationLoading" duration-ms="39" started-at="2011-06-23T10:41:51Z" finished-at="2011-06-23T10:41:51Z">
1187 <test-method status="PASS" signature="testExecute()" name="testExecute" duration-ms="364" started-at="2011-06-23T10:41:51Z" finished-at="2011-06-23T10:41:51Z">
1189 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:41:51Z" finished-at="2011-06-23T10:41:51Z">
1191 <test-method status="PASS" signature="testNcore()" name="testNcore" duration-ms="0" started-at="2011-06-23T10:41:51Z" finished-at="2011-06-23T10:41:51Z">
1193 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:41:51Z" finished-at="2011-06-23T10:41:51Z">
1195 <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:41:51Z" finished-at="2011-06-23T10:41:51Z">
1197 <test-method status="PASS" signature="testPersistance()" name="testPersistance" duration-ms="769" started-at="2011-06-23T10:41:51Z" finished-at="2011-06-23T10:41:52Z">
1200 <class name="compbio.runner.msa.LimitTester">
1201 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="22" started-at="2011-06-23T10:38:32Z" finished-at="2011-06-23T10:38:32Z">
1203 <test-method status="PASS" signature="testLimitExceeded()" name="testLimitExceeded" duration-ms="14" started-at="2011-06-23T10:38:32Z" finished-at="2011-06-23T10:38:32Z">
1205 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="18" started-at="2011-06-23T10:38:32Z" finished-at="2011-06-23T10:38:32Z">
1207 <test-method status="PASS" signature="testLoadLimits()" name="testLoadLimits" duration-ms="0" started-at="2011-06-23T10:38:32Z" finished-at="2011-06-23T10:38:32Z">
1210 <class name="compbio.runner._impl.OBTester">
1211 <test-method status="PASS" signature="testGetTestCommand()" name="testGetTestCommand" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
1213 <test-method status="PASS" signature="testGetTestArgsCommand()" name="testGetTestArgsCommand" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
1216 <class name="compbio.engine.local.LocalRunnerTester">
1217 <test-method status="PASS" signature="testCancelCompletedTaskLocally()" name="testCancelCompletedTaskLocally" duration-ms="49" started-at="2011-06-23T10:36:13Z" finished-at="2011-06-23T10:36:13Z">
1218 <exception class="java.util.concurrent.CancellationException">
1220 <![CDATA[java.util.concurrent.CancellationException
1221 at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
1222 at java.util.concurrent.FutureTask.get(FutureTask.java:83)
1223 at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108)
1224 at compbio.engine.local.LocalRunner.waitForResult(LocalRunner.java:99)
1225 at compbio.engine.local.LocalRunnerTester.testCancelCompletedTaskLocally(LocalRunnerTester.java:139)
1226 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
1227 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
1228 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
1229 at java.lang.reflect.Method.invoke(Method.java:597)
1230 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
1231 at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
1232 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
1233 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
1234 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
1235 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
1236 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
1237 at org.testng.TestRunner.privateRun(TestRunner.java:592)
1238 at org.testng.TestRunner.run(TestRunner.java:486)
1239 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
1240 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
1241 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
1242 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
1243 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
1244 at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
1245 at org.testng.TestNG.run(TestNG.java:784)
1246 at org.testng.TestNG.privateMain(TestNG.java:949)
1247 at org.testng.TestNG.main(TestNG.java:922)
1252 <test-method status="PASS" signature="testCancelLocally()" name="testCancelLocally" duration-ms="17" started-at="2011-06-23T10:36:13Z" finished-at="2011-06-23T10:36:13Z">
1253 <exception class="java.util.concurrent.CancellationException">
1255 <![CDATA[java.util.concurrent.CancellationException
1256 at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
1257 at java.util.concurrent.FutureTask.get(FutureTask.java:83)
1258 at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108)
1259 at compbio.engine.local.LocalRunner.waitForResult(LocalRunner.java:99)
1260 at compbio.engine.local.LocalRunnerTester.testCancelLocally(LocalRunnerTester.java:66)
1261 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
1262 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
1263 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
1264 at java.lang.reflect.Method.invoke(Method.java:597)
1265 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
1266 at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
1267 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
1268 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
1269 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
1270 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
1271 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
1272 at org.testng.TestRunner.privateRun(TestRunner.java:592)
1273 at org.testng.TestRunner.run(TestRunner.java:486)
1274 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
1275 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
1276 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
1277 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
1278 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
1279 at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
1280 at org.testng.TestNG.run(TestNG.java:784)
1281 at org.testng.TestNG.privateMain(TestNG.java:949)
1282 at org.testng.TestNG.main(TestNG.java:922)
1287 <test-method status="PASS" signature="testMultipleCancelLocally()" name="testMultipleCancelLocally" duration-ms="44" started-at="2011-06-23T10:36:13Z" finished-at="2011-06-23T10:36:13Z">
1288 <exception class="java.util.concurrent.CancellationException">
1290 <![CDATA[java.util.concurrent.CancellationException
1291 at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
1292 at java.util.concurrent.FutureTask.get(FutureTask.java:83)
1293 at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108)
1294 at compbio.engine.local.LocalRunner.waitForResult(LocalRunner.java:99)
1295 at compbio.engine.local.LocalRunnerTester.testMultipleCancelLocally(LocalRunnerTester.java:114)
1296 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
1297 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
1298 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
1299 at java.lang.reflect.Method.invoke(Method.java:597)
1300 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
1301 at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
1302 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
1303 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
1304 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
1305 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
1306 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
1307 at org.testng.TestRunner.privateRun(TestRunner.java:592)
1308 at org.testng.TestRunner.run(TestRunner.java:486)
1309 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
1310 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
1311 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
1312 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
1313 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
1314 at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
1315 at org.testng.TestNG.run(TestNG.java:784)
1316 at org.testng.TestNG.privateMain(TestNG.java:949)
1317 at org.testng.TestNG.main(TestNG.java:922)
1323 <class name="compbio.runner._impl.Tmhmm2Tester">
1324 <test-method status="PASS" signature="testGetTestCommand()" name="testGetTestCommand" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
1327 <class name="compbio.runner.msa.MuscleParametersTester">
1328 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="48" started-at="2011-06-23T10:38:57Z" finished-at="2011-06-23T10:38:57Z">
1330 <test-method status="PASS" signature="testArguments()" name="testArguments" duration-ms="4387" started-at="2011-06-23T10:38:57Z" finished-at="2011-06-23T10:39:01Z">
1332 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="37" started-at="2011-06-23T10:39:01Z" finished-at="2011-06-23T10:39:01Z">
1334 <test-method status="PASS" signature="testConfiguration()" name="testConfiguration" duration-ms="1" started-at="2011-06-23T10:39:01Z" finished-at="2011-06-23T10:39:01Z">
1336 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="34" started-at="2011-06-23T10:39:01Z" finished-at="2011-06-23T10:39:01Z">
1338 <test-method status="PASS" signature="testConstrainedParametersMaxValues()" name="testConstrainedParametersMaxValues" duration-ms="1977" started-at="2011-06-23T10:39:01Z" finished-at="2011-06-23T10:39:03Z">
1340 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="36" started-at="2011-06-23T10:39:03Z" finished-at="2011-06-23T10:39:03Z">
1342 <test-method status="PASS" signature="testConstrainedParametersMinValues()" name="testConstrainedParametersMinValues" duration-ms="1112" started-at="2011-06-23T10:39:03Z" finished-at="2011-06-23T10:39:04Z">
1344 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="35" started-at="2011-06-23T10:39:04Z" finished-at="2011-06-23T10:39:04Z">
1346 <test-method status="PASS" signature="testConstrainedParametersRandomValues()" name="testConstrainedParametersRandomValues" duration-ms="2749" started-at="2011-06-23T10:39:04Z" finished-at="2011-06-23T10:39:07Z">
1348 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="34" started-at="2011-06-23T10:39:07Z" finished-at="2011-06-23T10:39:07Z">
1350 <test-method status="PASS" signature="testDefaultParameters()" name="testDefaultParameters" duration-ms="100" started-at="2011-06-23T10:39:07Z" finished-at="2011-06-23T10:39:07Z">
1352 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="35" started-at="2011-06-23T10:39:07Z" finished-at="2011-06-23T10:39:07Z">
1354 <test-method status="PASS" signature="testOptions()" name="testOptions" duration-ms="1360" started-at="2011-06-23T10:39:07Z" finished-at="2011-06-23T10:39:09Z">
1356 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="35" started-at="2011-06-23T10:39:09Z" finished-at="2011-06-23T10:39:09Z">
1358 <test-method status="PASS" signature="testParameters()" name="testParameters" duration-ms="1919" started-at="2011-06-23T10:39:09Z" finished-at="2011-06-23T10:39:11Z">
1360 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="36" started-at="2011-06-23T10:39:11Z" finished-at="2011-06-23T10:39:11Z">
1362 <test-method status="PASS" signature="testPresets()" name="testPresets" duration-ms="242" started-at="2011-06-23T10:39:11Z" finished-at="2011-06-23T10:39:11Z">
1365 <class name="compbio.data.sequence.FastaSequenceGeneratorTester">
1366 <test-method status="PASS" signature="testProteinSequenceGeneration()" name="testProteinSequenceGeneration" duration-ms="7" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
1369 <class name="compbio.engine.cluster.drmaa.ClusterSessionTester">
1370 <test-method status="PASS" signature="testTaskList()" name="testTaskList" duration-ms="3953" started-at="2011-06-23T10:35:12Z" finished-at="2011-06-23T10:35:16Z">
1373 <class name="compbio.data.sequence.FastaReaderTester">
1374 <test-method status="PASS" signature="test()" name="test" duration-ms="18" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
1377 <class name="compbio.data.sequence.FastaSequenceTester">
1378 <test-method status="PASS" signature="testGetFormattedFasta()" name="testGetFormattedFasta" duration-ms="0" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
1381 <class name="compbio.data.sequence.SequenceUtilTester">
1382 <test-method status="PASS" signature="loadJronnFile()" name="loadJronnFile" duration-ms="27" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
1384 <test-method status="PASS" signature="testCleanProteinSequence()" name="testCleanProteinSequence" duration-ms="1" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
1386 <test-method status="PASS" signature="testDeepCleanSequence()" name="testDeepCleanSequence" duration-ms="0" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
1388 <test-method status="PASS" signature="testReadAAConResults()" name="testReadAAConResults" duration-ms="269" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
1390 <test-method status="PASS" signature="testCleanSequence()" name="testCleanSequence" duration-ms="0" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
1392 <test-method status="PASS" signature="testReadDisemblResults()" name="testReadDisemblResults" duration-ms="125" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
1394 <test-method status="PASS" signature="testReadGlobPlotResults()" name="testReadGlobPlotResults" duration-ms="104" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
1396 <test-method status="PASS" signature="testReadIUPredForGlobDomain()" name="testReadIUPredForGlobDomain" duration-ms="6" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
1398 <test-method status="PASS" signature="testReadIUPredForShortAndLongDisorder()" name="testReadIUPredForShortAndLongDisorder" duration-ms="36" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
1400 <test-method status="PASS" signature="testReadWriteFasta()" name="testReadWriteFasta" duration-ms="8" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:07Z">
1402 <test-method status="PASS" signature="testisNonAmbNucleotideSequence()" name="testisNonAmbNucleotideSequence" duration-ms="1" started-at="2011-06-23T10:35:07Z" finished-at="2011-06-23T10:35:07Z">
1404 <test-method status="PASS" signature="testisProteinSequence()" name="testisProteinSequence" duration-ms="0" started-at="2011-06-23T10:35:07Z" finished-at="2011-06-23T10:35:07Z">
1407 <class name="compbio.runner.msa.TcoffeeParametersTester">
1408 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="0" started-at="2011-06-23T10:41:17Z" finished-at="2011-06-23T10:41:17Z">
1410 <test-method status="PASS" signature="testArguments()" name="testArguments" duration-ms="4098" started-at="2011-06-23T10:41:17Z" finished-at="2011-06-23T10:41:21Z">
1412 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="0" started-at="2011-06-23T10:41:21Z" finished-at="2011-06-23T10:41:21Z">
1414 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="0" started-at="2011-06-23T10:41:21Z" finished-at="2011-06-23T10:41:21Z">
1416 <test-method status="PASS" signature="testConfiguration()" name="testConfiguration" duration-ms="0" started-at="2011-06-23T10:41:21Z" finished-at="2011-06-23T10:41:21Z">
1418 <test-method status="PASS" signature="testConstrainedParametersMaxValues()" name="testConstrainedParametersMaxValues" duration-ms="4319" started-at="2011-06-23T10:41:21Z" finished-at="2011-06-23T10:41:25Z">
1420 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="1" started-at="2011-06-23T10:41:25Z" finished-at="2011-06-23T10:41:25Z">
1422 <test-method status="PASS" signature="testConstrainedParametersMinValues()" name="testConstrainedParametersMinValues" duration-ms="2887" started-at="2011-06-23T10:41:25Z" finished-at="2011-06-23T10:41:28Z">
1424 <test-method status="PASS" signature="testConstrainedParametersRandomValues()" name="testConstrainedParametersRandomValues" duration-ms="8762" started-at="2011-06-23T10:41:28Z" finished-at="2011-06-23T10:41:37Z">
1426 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="0" started-at="2011-06-23T10:41:28Z" finished-at="2011-06-23T10:41:28Z">
1428 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="0" started-at="2011-06-23T10:41:37Z" finished-at="2011-06-23T10:41:37Z">
1430 <test-method status="PASS" signature="testDefaultParameters()" name="testDefaultParameters" duration-ms="3850" started-at="2011-06-23T10:41:37Z" finished-at="2011-06-23T10:41:41Z">
1432 <test-method status="PASS" signature="testOptions()" name="testOptions" duration-ms="377" started-at="2011-06-23T10:41:41Z" finished-at="2011-06-23T10:41:41Z">
1434 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="0" started-at="2011-06-23T10:41:41Z" finished-at="2011-06-23T10:41:41Z">
1436 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="0" started-at="2011-06-23T10:41:41Z" finished-at="2011-06-23T10:41:41Z">
1438 <test-method status="PASS" signature="testParameters()" name="testParameters" duration-ms="3800" started-at="2011-06-23T10:41:41Z" finished-at="2011-06-23T10:41:45Z">
1440 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="0" started-at="2011-06-23T10:41:45Z" finished-at="2011-06-23T10:41:45Z">
1442 <test-method status="PASS" signature="testPresets()" name="testPresets" duration-ms="214" started-at="2011-06-23T10:41:45Z" finished-at="2011-06-23T10:41:45Z">
1445 <class name="compbio.runner.msa.ClustalWTester">
1446 <test-method status="PASS" signature="testRunWithMatrix()" name="testRunWithMatrix" duration-ms="130" started-at="2011-06-23T10:38:24Z" finished-at="2011-06-23T10:38:24Z">
1448 <test-method status="PASS" signature="testConfigurationLoading()" name="testConfigurationLoading" duration-ms="46" started-at="2011-06-23T10:38:24Z" finished-at="2011-06-23T10:38:24Z">
1450 <test-method status="PASS" signature="testRunLocally()" name="testRunLocally" duration-ms="132" started-at="2011-06-23T10:38:24Z" finished-at="2011-06-23T10:38:24Z">
1452 <test-method status="PASS" signature="readStatisticsClusterExecution()" name="readStatisticsClusterExecution" duration-ms="1640" started-at="2011-06-23T10:38:24Z" finished-at="2011-06-23T10:38:26Z">
1454 <test-method status="PASS" signature="testRunOnCluster()" name="testRunOnCluster" duration-ms="5003" started-at="2011-06-23T10:38:26Z" finished-at="2011-06-23T10:38:31Z">
1456 <test-method status="PASS" signature="readStatistics()" name="readStatistics" duration-ms="518" started-at="2011-06-23T10:38:31Z" finished-at="2011-06-23T10:38:31Z">
1458 <test-method status="PASS" signature="testOptionsLocally()" name="testOptionsLocally" duration-ms="429" started-at="2011-06-23T10:38:31Z" finished-at="2011-06-23T10:38:32Z">
1460 <test-method status="PASS" signature="testPersistance()" name="testPersistance" duration-ms="303" started-at="2011-06-23T10:38:32Z" finished-at="2011-06-23T10:38:32Z">
1463 <class name="compbio.engine.cluster.drmaa.UtilTester">
1464 <test-method status="PASS" signature="testParser()" name="testParser" duration-ms="1" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1467 <class name="compbio.engine.conf.DirectoryManagerTester">
1468 <test-method status="PASS" signature="testGetDirectory()" name="testGetDirectory" duration-ms="104" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1470 <test-method status="PASS" signature="testGetDirectory()" name="testGetDirectory" duration-ms="101" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1472 <test-method status="PASS" signature="testGetDirectory()" name="testGetDirectory" duration-ms="98" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1474 <test-method status="PASS" signature="testGetDirectory()" name="testGetDirectory" duration-ms="97" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1477 <class name="compbio.metadata.PresetTester">
1478 <test-method status="PASS" signature="marshallPreset()" name="marshallPreset" duration-ms="14" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
1480 <test-method status="PASS" signature="testPresetWithMuptiOptions()" name="testPresetWithMuptiOptions" duration-ms="1" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
1482 <test-method status="PASS" signature="validatePresets()" name="validatePresets" duration-ms="1" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
1485 <class name="compbio.metadata.OptionMarshallerTester">
1486 <test-method status="PASS" signature="testMarshalling()" name="testMarshalling" duration-ms="33" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
1487 <exception class="javax.xml.bind.MarshalException">
1489 <![CDATA[javax.xml.bind.MarshalException
1490 - with linked exception:
1491 [org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid content was found starting with element 'options'. One of '{runnerClassName}' is expected.]
1492 at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:323)
1493 at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:249)
1494 at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:75)
1495 at compbio.engine.conf.RunnerConfigMarshaller.writeAndValidate(RunnerConfigMarshaller.java:88)
1496 at compbio.metadata.OptionMarshallerTester.testMarshalling(OptionMarshallerTester.java:140)
1497 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
1498 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
1499 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
1500 at java.lang.reflect.Method.invoke(Method.java:597)
1501 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
1502 at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
1503 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
1504 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
1505 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
1506 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
1507 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
1508 at org.testng.TestRunner.privateRun(TestRunner.java:592)
1509 at org.testng.TestRunner.run(TestRunner.java:486)
1510 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
1511 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
1512 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
1513 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
1514 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
1515 at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
1516 at org.testng.TestNG.run(TestNG.java:784)
1517 at org.testng.TestNG.privateMain(TestNG.java:949)
1518 at org.testng.TestNG.main(TestNG.java:922)
1519 Caused by: org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid content was found starting with element 'options'. One of '{runnerClassName}' is expected.
1520 at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.createSAXParseException(ErrorHandlerWrapper.java:195)
1521 at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.error(ErrorHandlerWrapper.java:131)
1522 at com.sun.org.apache.xerces.internal.impl.XMLErrorReporter.reportError(XMLErrorReporter.java:384)
1523 at com.sun.org.apache.xerces.internal.impl.XMLErrorReporter.reportError(XMLErrorReporter.java:318)
1524 at com.sun.org.apache.xerces.internal.impl.xs.XMLSchemaValidator$XSIErrorReporter.reportError(XMLSchemaValidator.java:410)
1525 at com.sun.org.apache.xerces.internal.impl.xs.XMLSchemaValidator.reportSchemaError(XMLSchemaValidator.java:3165)
1526 at com.sun.org.apache.xerces.internal.impl.xs.XMLSchemaValidator.handleStartElement(XMLSchemaValidator.java:1777)
1527 at com.sun.org.apache.xerces.internal.impl.xs.XMLSchemaValidator.startElement(XMLSchemaValidator.java:685)
1528 at com.sun.org.apache.xerces.internal.jaxp.validation.ValidatorHandlerImpl.startElement(ValidatorHandlerImpl.java:549)
1529 at org.xml.sax.helpers.XMLFilterImpl.startElement(XMLFilterImpl.java:527)
1530 at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:128)
1531 at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:106)
1532 at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:310)
1533 at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:699)
1534 at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:69)
1535 at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:172)
1536 at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:159)
1537 at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:344)
1538 at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:597)
1539 at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:328)
1540 at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:498)
1541 at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:320)
1547 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
1549 <test-method status="PASS" signature="testUnMarshalling()" name="testUnMarshalling" duration-ms="65" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
1551 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
1554 <class name="compbio.runner.msa.ClustalWParametersTester">
1555 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="52" started-at="2011-06-23T10:35:00Z" finished-at="2011-06-23T10:35:00Z">
1557 <test-method status="PASS" signature="testArguments()" name="testArguments" duration-ms="1649" started-at="2011-06-23T10:35:00Z" finished-at="2011-06-23T10:35:02Z">
1559 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="53" started-at="2011-06-23T10:35:02Z" finished-at="2011-06-23T10:35:02Z">
1561 <test-method status="PASS" signature="testConfiguration()" name="testConfiguration" duration-ms="1" started-at="2011-06-23T10:35:02Z" finished-at="2011-06-23T10:35:02Z">
1563 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="55" started-at="2011-06-23T10:35:02Z" finished-at="2011-06-23T10:35:02Z">
1565 <test-method status="PASS" signature="testConstrainedParametersMaxValues()" name="testConstrainedParametersMaxValues" duration-ms="678" started-at="2011-06-23T10:35:02Z" finished-at="2011-06-23T10:35:02Z">
1567 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="51" started-at="2011-06-23T10:35:02Z" finished-at="2011-06-23T10:35:03Z">
1569 <test-method status="PASS" signature="testConstrainedParametersMinValues()" name="testConstrainedParametersMinValues" duration-ms="682" started-at="2011-06-23T10:35:03Z" finished-at="2011-06-23T10:35:03Z">
1571 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="56" started-at="2011-06-23T10:35:03Z" finished-at="2011-06-23T10:35:03Z">
1573 <test-method status="PASS" signature="testConstrainedParametersRandomValues()" name="testConstrainedParametersRandomValues" duration-ms="672" started-at="2011-06-23T10:35:03Z" finished-at="2011-06-23T10:35:04Z">
1575 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="48" started-at="2011-06-23T10:35:04Z" finished-at="2011-06-23T10:35:04Z">
1577 <test-method status="PASS" signature="testDefaultParameters()" name="testDefaultParameters" duration-ms="129" started-at="2011-06-23T10:35:04Z" finished-at="2011-06-23T10:35:04Z">
1579 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="48" started-at="2011-06-23T10:35:04Z" finished-at="2011-06-23T10:35:04Z">
1581 <test-method status="PASS" signature="testOptions()" name="testOptions" duration-ms="396" started-at="2011-06-23T10:35:04Z" finished-at="2011-06-23T10:35:05Z">
1583 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="48" started-at="2011-06-23T10:35:05Z" finished-at="2011-06-23T10:35:05Z">
1585 <test-method status="PASS" signature="testParameters()" name="testParameters" duration-ms="1074" started-at="2011-06-23T10:35:05Z" finished-at="2011-06-23T10:35:06Z">
1587 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="49" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
1589 <test-method status="PASS" signature="testPresets()" name="testPresets" duration-ms="129" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
1592 <class name="compbio.engine.conf.RunnerConfigMarshallerTester">
1593 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="15" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1595 <test-method status="PASS" signature="testMarshalling()" name="testMarshalling" duration-ms="4" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1597 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="13" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1599 <test-method status="PASS" signature="testSchemaFromCodeGeneration()" name="testSchemaFromCodeGeneration" duration-ms="130" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1601 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="14" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1603 <test-method status="PASS" signature="testUnMarshalling()" name="testUnMarshalling" duration-ms="17" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1605 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="14" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1607 <test-method status="PASS" signature="testValidation()" name="testValidation" duration-ms="82" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1609 <test-method status="PASS" signature="setup()" name="setup" is-config="true" duration-ms="14" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1611 <test-method status="PASS" signature="testValidationOnMarshalling()" name="testValidationOnMarshalling" duration-ms="10" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
1612 <exception class="javax.xml.bind.MarshalException">
1614 <![CDATA[javax.xml.bind.MarshalException
1615 - with linked exception:
1616 [org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid content was found starting with element 'options'. One of '{runnerClassName}' is expected.]
1617 at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:323)
1618 at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:249)
1619 at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:75)
1620 at compbio.engine.conf.RunnerConfigMarshaller.writeAndValidate(RunnerConfigMarshaller.java:88)
1621 at compbio.engine.conf.RunnerConfigMarshallerTester.testValidationOnMarshalling(RunnerConfigMarshallerTester.java:259)
1622 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
1623 at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
1624 at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
1625 at java.lang.reflect.Method.invoke(Method.java:597)
1626 at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
1627 at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
1628 at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
1629 at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
1630 at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
1631 at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
1632 at org.testng.TestRunner.runWorkers(TestRunner.java:759)
1633 at org.testng.TestRunner.privateRun(TestRunner.java:592)
1634 at org.testng.TestRunner.run(TestRunner.java:486)
1635 at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
1636 at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
1637 at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
1638 at org.testng.SuiteRunner.run(SuiteRunner.java:204)
1639 at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
1640 at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
1641 at org.testng.TestNG.run(TestNG.java:784)
1642 at org.testng.TestNG.privateMain(TestNG.java:949)
1643 at org.testng.TestNG.main(TestNG.java:922)
1644 Caused by: org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid content was found starting with element 'options'. One of '{runnerClassName}' is expected.
1645 at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.createSAXParseException(ErrorHandlerWrapper.java:195)
1646 at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.error(ErrorHandlerWrapper.java:131)
1647 at com.sun.org.apache.xerces.internal.impl.XMLErrorReporter.reportError(XMLErrorReporter.java:384)
1648 at com.sun.org.apache.xerces.internal.impl.XMLErrorReporter.reportError(XMLErrorReporter.java:318)
1649 at com.sun.org.apache.xerces.internal.impl.xs.XMLSchemaValidator$XSIErrorReporter.reportError(XMLSchemaValidator.java:410)
1650 at com.sun.org.apache.xerces.internal.impl.xs.XMLSchemaValidator.reportSchemaError(XMLSchemaValidator.java:3165)
1651 at com.sun.org.apache.xerces.internal.impl.xs.XMLSchemaValidator.handleStartElement(XMLSchemaValidator.java:1777)
1652 at com.sun.org.apache.xerces.internal.impl.xs.XMLSchemaValidator.startElement(XMLSchemaValidator.java:685)
1653 at com.sun.org.apache.xerces.internal.jaxp.validation.ValidatorHandlerImpl.startElement(ValidatorHandlerImpl.java:549)
1654 at org.xml.sax.helpers.XMLFilterImpl.startElement(XMLFilterImpl.java:527)
1655 at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:128)
1656 at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:106)
1657 at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:310)
1658 at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:699)
1659 at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:69)
1660 at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:172)
1661 at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:159)
1662 at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:344)
1663 at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:597)
1664 at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:328)
1665 at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:498)
1666 at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:320)