3 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/AAConWS.wsdl
4 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/AAConWS_schema1.xsd
5 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/ClustalWS.wsdl
6 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/ClustalWS_schema1.xsd
7 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/DisemblWS.wsdl
8 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/DisemblWS_schema1.xsd
9 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/GlobPlotWS.wsdl
10 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/GlobPlotWS_schema1.xsd
11 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/IUPredWS.wsdl
12 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/IUPredWS_schema1.xsd
13 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/JpredWS.wsdl
14 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/JpredWS_schema1.xsd
15 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/JronnWS.wsdl
16 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/JronnWS_schema1.xsd
17 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MafftWS.wsdl
18 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MafftWS_schema1.xsd
19 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MuscleWS.wsdl
20 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MuscleWS_schema1.xsd
21 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/RNAalifoldWS.wsdl
22 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/RNAalifoldWS_schema1.xsd
23 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/RegistryWS.wsdl
24 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/RegistryWS_schema1.xsd
25 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/TcoffeeWS.wsdl
26 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/TcoffeeWS_schema1.xsd
27 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.JpredWS
28 [wsgen] Note: ap round: 1
29 [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
30 [wsgen] [should process method: align hasWebMethods: false ]
31 [wsgen] [endpointReferencesInterface: true]
32 [wsgen] [declaring class has WebSevice: true]
33 [wsgen] [returning: true]
34 [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
35 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
36 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
37 [wsgen] [should process method: customAlign hasWebMethods: false ]
38 [wsgen] [endpointReferencesInterface: true]
39 [wsgen] [declaring class has WebSevice: true]
40 [wsgen] [returning: true]
41 [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
42 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
43 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
44 [wsgen] [should process method: presetAlign hasWebMethods: false ]
45 [wsgen] [endpointReferencesInterface: true]
46 [wsgen] [declaring class has WebSevice: true]
47 [wsgen] [returning: true]
48 [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
49 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
50 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
51 [wsgen] [should process method: getResult hasWebMethods: false ]
52 [wsgen] [endpointReferencesInterface: true]
53 [wsgen] [declaring class has WebSevice: true]
54 [wsgen] [returning: true]
55 [wsgen] [WrapperGen - method: getResult(java.lang.String)]
56 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
57 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
58 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
59 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
60 [wsgen] [should process method: cancelJob hasWebMethods: false ]
61 [wsgen] [endpointReferencesInterface: true]
62 [wsgen] [declaring class has WebSevice: false]
63 [wsgen] [returning: true]
64 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
65 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
66 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
67 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
68 [wsgen] [endpointReferencesInterface: true]
69 [wsgen] [declaring class has WebSevice: false]
70 [wsgen] [returning: true]
71 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
72 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
73 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
74 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
75 [wsgen] [endpointReferencesInterface: true]
76 [wsgen] [declaring class has WebSevice: false]
77 [wsgen] [returning: true]
78 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
79 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
80 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
81 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
82 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
83 [wsgen] [endpointReferencesInterface: true]
84 [wsgen] [declaring class has WebSevice: false]
85 [wsgen] [returning: true]
86 [wsgen] [WrapperGen - method: getRunnerOptions()]
87 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
88 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
89 [wsgen] [should process method: getPresets hasWebMethods: false ]
90 [wsgen] [endpointReferencesInterface: true]
91 [wsgen] [declaring class has WebSevice: false]
92 [wsgen] [returning: true]
93 [wsgen] [WrapperGen - method: getPresets()]
94 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
95 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
96 [wsgen] [should process method: getLimit hasWebMethods: false ]
97 [wsgen] [endpointReferencesInterface: true]
98 [wsgen] [declaring class has WebSevice: false]
99 [wsgen] [returning: true]
100 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
101 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
102 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
103 [wsgen] [should process method: getLimits hasWebMethods: false ]
104 [wsgen] [endpointReferencesInterface: true]
105 [wsgen] [declaring class has WebSevice: false]
106 [wsgen] [returning: true]
107 [wsgen] [WrapperGen - method: getLimits()]
108 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
109 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
110 [wsgen] compbio/data/msa/jaxws/Align.java
111 [wsgen] compbio/data/msa/jaxws/AlignResponse.java
112 [wsgen] compbio/data/msa/jaxws/CancelJob.java
113 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
114 [wsgen] compbio/data/msa/jaxws/CustomAlign.java
115 [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
116 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
117 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
118 [wsgen] compbio/data/msa/jaxws/GetLimit.java
119 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
120 [wsgen] compbio/data/msa/jaxws/GetLimits.java
121 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
122 [wsgen] compbio/data/msa/jaxws/GetPresets.java
123 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
124 [wsgen] compbio/data/msa/jaxws/GetResult.java
125 [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
126 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
127 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
128 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
129 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
130 [wsgen] compbio/data/msa/jaxws/PresetAlign.java
131 [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
132 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
133 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
134 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
135 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
136 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
137 [wsgen] Note: ap round: 2
138 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.AAConWS
139 [wsgen] Note: ap round: 1
140 [wsgen] [ProcessedMethods Interface: compbio.data.msa.SequenceAnnotation<T>]
141 [wsgen] [should process method: analize hasWebMethods: false ]
142 [wsgen] [endpointReferencesInterface: true]
143 [wsgen] [declaring class has WebSevice: true]
144 [wsgen] [returning: true]
145 [wsgen] [WrapperGen - method: analize(java.util.List<compbio.data.sequence.FastaSequence>)]
146 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
147 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Analize]
148 [wsgen] [should process method: customAnalize hasWebMethods: false ]
149 [wsgen] [endpointReferencesInterface: true]
150 [wsgen] [declaring class has WebSevice: true]
151 [wsgen] [returning: true]
152 [wsgen] [WrapperGen - method: customAnalize(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
153 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
154 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAnalize]
155 [wsgen] [should process method: presetAnalize hasWebMethods: false ]
156 [wsgen] [endpointReferencesInterface: true]
157 [wsgen] [declaring class has WebSevice: true]
158 [wsgen] [returning: true]
159 [wsgen] [WrapperGen - method: presetAnalize(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
160 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
161 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAnalize]
162 [wsgen] [should process method: getAnnotation hasWebMethods: false ]
163 [wsgen] [endpointReferencesInterface: true]
164 [wsgen] [declaring class has WebSevice: true]
165 [wsgen] [returning: true]
166 [wsgen] [WrapperGen - method: getAnnotation(java.lang.String)]
167 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
168 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetAnnotation]
169 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
170 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
171 [wsgen] [should process method: cancelJob hasWebMethods: false ]
172 [wsgen] [endpointReferencesInterface: true]
173 [wsgen] [declaring class has WebSevice: false]
174 [wsgen] [returning: true]
175 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
176 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
177 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
178 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
179 [wsgen] [endpointReferencesInterface: true]
180 [wsgen] [declaring class has WebSevice: false]
181 [wsgen] [returning: true]
182 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
183 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
184 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
185 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
186 [wsgen] [endpointReferencesInterface: true]
187 [wsgen] [declaring class has WebSevice: false]
188 [wsgen] [returning: true]
189 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
190 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
191 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
192 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
193 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
194 [wsgen] [endpointReferencesInterface: true]
195 [wsgen] [declaring class has WebSevice: false]
196 [wsgen] [returning: true]
197 [wsgen] [WrapperGen - method: getRunnerOptions()]
198 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
199 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
200 [wsgen] [should process method: getPresets hasWebMethods: false ]
201 [wsgen] [endpointReferencesInterface: true]
202 [wsgen] [declaring class has WebSevice: false]
203 [wsgen] [returning: true]
204 [wsgen] [WrapperGen - method: getPresets()]
205 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
206 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
207 [wsgen] [should process method: getLimit hasWebMethods: false ]
208 [wsgen] [endpointReferencesInterface: true]
209 [wsgen] [declaring class has WebSevice: false]
210 [wsgen] [returning: true]
211 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
212 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
213 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
214 [wsgen] [should process method: getLimits hasWebMethods: false ]
215 [wsgen] [endpointReferencesInterface: true]
216 [wsgen] [declaring class has WebSevice: false]
217 [wsgen] [returning: true]
218 [wsgen] [WrapperGen - method: getLimits()]
219 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
220 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
221 [wsgen] compbio/data/msa/jaxws/Analize.java
222 [wsgen] compbio/data/msa/jaxws/AnalizeResponse.java
223 [wsgen] compbio/data/msa/jaxws/CancelJob.java
224 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
225 [wsgen] compbio/data/msa/jaxws/CustomAnalize.java
226 [wsgen] compbio/data/msa/jaxws/CustomAnalizeResponse.java
227 [wsgen] compbio/data/msa/jaxws/GetAnnotation.java
228 [wsgen] compbio/data/msa/jaxws/GetAnnotationResponse.java
229 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
230 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
231 [wsgen] compbio/data/msa/jaxws/GetLimit.java
232 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
233 [wsgen] compbio/data/msa/jaxws/GetLimits.java
234 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
235 [wsgen] compbio/data/msa/jaxws/GetPresets.java
236 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
237 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
238 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
239 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
240 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
241 [wsgen] compbio/data/msa/jaxws/PresetAnalize.java
242 [wsgen] compbio/data/msa/jaxws/PresetAnalizeResponse.java
243 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
244 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
245 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
246 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
247 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
248 [wsgen] Note: ap round: 2
249 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.ClustalWS
250 [wsgen] Note: ap round: 1
251 [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
252 [wsgen] [should process method: align hasWebMethods: false ]
253 [wsgen] [endpointReferencesInterface: true]
254 [wsgen] [declaring class has WebSevice: true]
255 [wsgen] [returning: true]
256 [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
257 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
258 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
259 [wsgen] [should process method: customAlign hasWebMethods: false ]
260 [wsgen] [endpointReferencesInterface: true]
261 [wsgen] [declaring class has WebSevice: true]
262 [wsgen] [returning: true]
263 [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
264 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
265 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
266 [wsgen] [should process method: presetAlign hasWebMethods: false ]
267 [wsgen] [endpointReferencesInterface: true]
268 [wsgen] [declaring class has WebSevice: true]
269 [wsgen] [returning: true]
270 [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
271 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
272 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
273 [wsgen] [should process method: getResult hasWebMethods: false ]
274 [wsgen] [endpointReferencesInterface: true]
275 [wsgen] [declaring class has WebSevice: true]
276 [wsgen] [returning: true]
277 [wsgen] [WrapperGen - method: getResult(java.lang.String)]
278 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
279 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
280 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
281 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
282 [wsgen] [should process method: cancelJob hasWebMethods: false ]
283 [wsgen] [endpointReferencesInterface: true]
284 [wsgen] [declaring class has WebSevice: false]
285 [wsgen] [returning: true]
286 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
287 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
288 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
289 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
290 [wsgen] [endpointReferencesInterface: true]
291 [wsgen] [declaring class has WebSevice: false]
292 [wsgen] [returning: true]
293 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
294 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
295 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
296 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
297 [wsgen] [endpointReferencesInterface: true]
298 [wsgen] [declaring class has WebSevice: false]
299 [wsgen] [returning: true]
300 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
301 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
302 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
303 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
304 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
305 [wsgen] [endpointReferencesInterface: true]
306 [wsgen] [declaring class has WebSevice: false]
307 [wsgen] [returning: true]
308 [wsgen] [WrapperGen - method: getRunnerOptions()]
309 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
310 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
311 [wsgen] [should process method: getPresets hasWebMethods: false ]
312 [wsgen] [endpointReferencesInterface: true]
313 [wsgen] [declaring class has WebSevice: false]
314 [wsgen] [returning: true]
315 [wsgen] [WrapperGen - method: getPresets()]
316 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
317 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
318 [wsgen] [should process method: getLimit hasWebMethods: false ]
319 [wsgen] [endpointReferencesInterface: true]
320 [wsgen] [declaring class has WebSevice: false]
321 [wsgen] [returning: true]
322 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
323 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
324 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
325 [wsgen] [should process method: getLimits hasWebMethods: false ]
326 [wsgen] [endpointReferencesInterface: true]
327 [wsgen] [declaring class has WebSevice: false]
328 [wsgen] [returning: true]
329 [wsgen] [WrapperGen - method: getLimits()]
330 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
331 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
332 [wsgen] compbio/data/msa/jaxws/Align.java
333 [wsgen] compbio/data/msa/jaxws/AlignResponse.java
334 [wsgen] compbio/data/msa/jaxws/CancelJob.java
335 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
336 [wsgen] compbio/data/msa/jaxws/CustomAlign.java
337 [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
338 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
339 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
340 [wsgen] compbio/data/msa/jaxws/GetLimit.java
341 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
342 [wsgen] compbio/data/msa/jaxws/GetLimits.java
343 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
344 [wsgen] compbio/data/msa/jaxws/GetPresets.java
345 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
346 [wsgen] compbio/data/msa/jaxws/GetResult.java
347 [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
348 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
349 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
350 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
351 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
352 [wsgen] compbio/data/msa/jaxws/PresetAlign.java
353 [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
354 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
355 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
356 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
357 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
358 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
359 [wsgen] Note: ap round: 2
360 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.MuscleWS
361 [wsgen] Note: ap round: 1
362 [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
363 [wsgen] [should process method: align hasWebMethods: false ]
364 [wsgen] [endpointReferencesInterface: true]
365 [wsgen] [declaring class has WebSevice: true]
366 [wsgen] [returning: true]
367 [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
368 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
369 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
370 [wsgen] [should process method: customAlign hasWebMethods: false ]
371 [wsgen] [endpointReferencesInterface: true]
372 [wsgen] [declaring class has WebSevice: true]
373 [wsgen] [returning: true]
374 [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
375 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
376 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
377 [wsgen] [should process method: presetAlign hasWebMethods: false ]
378 [wsgen] [endpointReferencesInterface: true]
379 [wsgen] [declaring class has WebSevice: true]
380 [wsgen] [returning: true]
381 [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
382 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
383 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
384 [wsgen] [should process method: getResult hasWebMethods: false ]
385 [wsgen] [endpointReferencesInterface: true]
386 [wsgen] [declaring class has WebSevice: true]
387 [wsgen] [returning: true]
388 [wsgen] [WrapperGen - method: getResult(java.lang.String)]
389 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
390 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
391 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
392 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
393 [wsgen] [should process method: cancelJob hasWebMethods: false ]
394 [wsgen] [endpointReferencesInterface: true]
395 [wsgen] [declaring class has WebSevice: false]
396 [wsgen] [returning: true]
397 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
398 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
399 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
400 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
401 [wsgen] [endpointReferencesInterface: true]
402 [wsgen] [declaring class has WebSevice: false]
403 [wsgen] [returning: true]
404 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
405 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
406 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
407 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
408 [wsgen] [endpointReferencesInterface: true]
409 [wsgen] [declaring class has WebSevice: false]
410 [wsgen] [returning: true]
411 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
412 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
413 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
414 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
415 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
416 [wsgen] [endpointReferencesInterface: true]
417 [wsgen] [declaring class has WebSevice: false]
418 [wsgen] [returning: true]
419 [wsgen] [WrapperGen - method: getRunnerOptions()]
420 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
421 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
422 [wsgen] [should process method: getPresets hasWebMethods: false ]
423 [wsgen] [endpointReferencesInterface: true]
424 [wsgen] [declaring class has WebSevice: false]
425 [wsgen] [returning: true]
426 [wsgen] [WrapperGen - method: getPresets()]
427 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
428 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
429 [wsgen] [should process method: getLimit hasWebMethods: false ]
430 [wsgen] [endpointReferencesInterface: true]
431 [wsgen] [declaring class has WebSevice: false]
432 [wsgen] [returning: true]
433 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
434 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
435 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
436 [wsgen] [should process method: getLimits hasWebMethods: false ]
437 [wsgen] [endpointReferencesInterface: true]
438 [wsgen] [declaring class has WebSevice: false]
439 [wsgen] [returning: true]
440 [wsgen] [WrapperGen - method: getLimits()]
441 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
442 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
443 [wsgen] compbio/data/msa/jaxws/Align.java
444 [wsgen] compbio/data/msa/jaxws/AlignResponse.java
445 [wsgen] compbio/data/msa/jaxws/CancelJob.java
446 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
447 [wsgen] compbio/data/msa/jaxws/CustomAlign.java
448 [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
449 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
450 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
451 [wsgen] compbio/data/msa/jaxws/GetLimit.java
452 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
453 [wsgen] compbio/data/msa/jaxws/GetLimits.java
454 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
455 [wsgen] compbio/data/msa/jaxws/GetPresets.java
456 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
457 [wsgen] compbio/data/msa/jaxws/GetResult.java
458 [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
459 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
460 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
461 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
462 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
463 [wsgen] compbio/data/msa/jaxws/PresetAlign.java
464 [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
465 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
466 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
467 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
468 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
469 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
470 [wsgen] Note: ap round: 2
471 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.MafftWS
472 [wsgen] Note: ap round: 1
473 [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
474 [wsgen] [should process method: align hasWebMethods: false ]
475 [wsgen] [endpointReferencesInterface: true]
476 [wsgen] [declaring class has WebSevice: true]
477 [wsgen] [returning: true]
478 [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
479 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
480 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
481 [wsgen] [should process method: customAlign hasWebMethods: false ]
482 [wsgen] [endpointReferencesInterface: true]
483 [wsgen] [declaring class has WebSevice: true]
484 [wsgen] [returning: true]
485 [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
486 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
487 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
488 [wsgen] [should process method: presetAlign hasWebMethods: false ]
489 [wsgen] [endpointReferencesInterface: true]
490 [wsgen] [declaring class has WebSevice: true]
491 [wsgen] [returning: true]
492 [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
493 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
494 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
495 [wsgen] [should process method: getResult hasWebMethods: false ]
496 [wsgen] [endpointReferencesInterface: true]
497 [wsgen] [declaring class has WebSevice: true]
498 [wsgen] [returning: true]
499 [wsgen] [WrapperGen - method: getResult(java.lang.String)]
500 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
501 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
502 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
503 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
504 [wsgen] [should process method: cancelJob hasWebMethods: false ]
505 [wsgen] [endpointReferencesInterface: true]
506 [wsgen] [declaring class has WebSevice: false]
507 [wsgen] [returning: true]
508 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
509 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
510 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
511 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
512 [wsgen] [endpointReferencesInterface: true]
513 [wsgen] [declaring class has WebSevice: false]
514 [wsgen] [returning: true]
515 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
516 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
517 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
518 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
519 [wsgen] [endpointReferencesInterface: true]
520 [wsgen] [declaring class has WebSevice: false]
521 [wsgen] [returning: true]
522 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
523 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
524 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
525 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
526 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
527 [wsgen] [endpointReferencesInterface: true]
528 [wsgen] [declaring class has WebSevice: false]
529 [wsgen] [returning: true]
530 [wsgen] [WrapperGen - method: getRunnerOptions()]
531 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
532 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
533 [wsgen] [should process method: getPresets hasWebMethods: false ]
534 [wsgen] [endpointReferencesInterface: true]
535 [wsgen] [declaring class has WebSevice: false]
536 [wsgen] [returning: true]
537 [wsgen] [WrapperGen - method: getPresets()]
538 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
539 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
540 [wsgen] [should process method: getLimit hasWebMethods: false ]
541 [wsgen] [endpointReferencesInterface: true]
542 [wsgen] [declaring class has WebSevice: false]
543 [wsgen] [returning: true]
544 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
545 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
546 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
547 [wsgen] [should process method: getLimits hasWebMethods: false ]
548 [wsgen] [endpointReferencesInterface: true]
549 [wsgen] [declaring class has WebSevice: false]
550 [wsgen] [returning: true]
551 [wsgen] [WrapperGen - method: getLimits()]
552 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
553 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
554 [wsgen] compbio/data/msa/jaxws/Align.java
555 [wsgen] compbio/data/msa/jaxws/AlignResponse.java
556 [wsgen] compbio/data/msa/jaxws/CancelJob.java
557 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
558 [wsgen] compbio/data/msa/jaxws/CustomAlign.java
559 [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
560 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
561 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
562 [wsgen] compbio/data/msa/jaxws/GetLimit.java
563 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
564 [wsgen] compbio/data/msa/jaxws/GetLimits.java
565 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
566 [wsgen] compbio/data/msa/jaxws/GetPresets.java
567 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
568 [wsgen] compbio/data/msa/jaxws/GetResult.java
569 [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
570 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
571 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
572 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
573 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
574 [wsgen] compbio/data/msa/jaxws/PresetAlign.java
575 [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
576 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
577 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
578 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
579 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
580 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
581 [wsgen] Note: ap round: 2
582 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.TcoffeeWS
583 [wsgen] Note: ap round: 1
584 [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
585 [wsgen] [should process method: align hasWebMethods: false ]
586 [wsgen] [endpointReferencesInterface: true]
587 [wsgen] [declaring class has WebSevice: true]
588 [wsgen] [returning: true]
589 [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
590 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
591 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
592 [wsgen] [should process method: customAlign hasWebMethods: false ]
593 [wsgen] [endpointReferencesInterface: true]
594 [wsgen] [declaring class has WebSevice: true]
595 [wsgen] [returning: true]
596 [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
597 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
598 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
599 [wsgen] [should process method: presetAlign hasWebMethods: false ]
600 [wsgen] [endpointReferencesInterface: true]
601 [wsgen] [declaring class has WebSevice: true]
602 [wsgen] [returning: true]
603 [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
604 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
605 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
606 [wsgen] [should process method: getResult hasWebMethods: false ]
607 [wsgen] [endpointReferencesInterface: true]
608 [wsgen] [declaring class has WebSevice: true]
609 [wsgen] [returning: true]
610 [wsgen] [WrapperGen - method: getResult(java.lang.String)]
611 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
612 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
613 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
614 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
615 [wsgen] [should process method: cancelJob hasWebMethods: false ]
616 [wsgen] [endpointReferencesInterface: true]
617 [wsgen] [declaring class has WebSevice: false]
618 [wsgen] [returning: true]
619 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
620 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
621 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
622 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
623 [wsgen] [endpointReferencesInterface: true]
624 [wsgen] [declaring class has WebSevice: false]
625 [wsgen] [returning: true]
626 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
627 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
628 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
629 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
630 [wsgen] [endpointReferencesInterface: true]
631 [wsgen] [declaring class has WebSevice: false]
632 [wsgen] [returning: true]
633 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
634 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
635 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
636 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
637 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
638 [wsgen] [endpointReferencesInterface: true]
639 [wsgen] [declaring class has WebSevice: false]
640 [wsgen] [returning: true]
641 [wsgen] [WrapperGen - method: getRunnerOptions()]
642 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
643 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
644 [wsgen] [should process method: getPresets hasWebMethods: false ]
645 [wsgen] [endpointReferencesInterface: true]
646 [wsgen] [declaring class has WebSevice: false]
647 [wsgen] [returning: true]
648 [wsgen] [WrapperGen - method: getPresets()]
649 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
650 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
651 [wsgen] [should process method: getLimit hasWebMethods: false ]
652 [wsgen] [endpointReferencesInterface: true]
653 [wsgen] [declaring class has WebSevice: false]
654 [wsgen] [returning: true]
655 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
656 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
657 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
658 [wsgen] [should process method: getLimits hasWebMethods: false ]
659 [wsgen] [endpointReferencesInterface: true]
660 [wsgen] [declaring class has WebSevice: false]
661 [wsgen] [returning: true]
662 [wsgen] [WrapperGen - method: getLimits()]
663 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
664 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
665 [wsgen] compbio/data/msa/jaxws/Align.java
666 [wsgen] compbio/data/msa/jaxws/AlignResponse.java
667 [wsgen] compbio/data/msa/jaxws/CancelJob.java
668 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
669 [wsgen] compbio/data/msa/jaxws/CustomAlign.java
670 [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
671 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
672 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
673 [wsgen] compbio/data/msa/jaxws/GetLimit.java
674 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
675 [wsgen] compbio/data/msa/jaxws/GetLimits.java
676 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
677 [wsgen] compbio/data/msa/jaxws/GetPresets.java
678 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
679 [wsgen] compbio/data/msa/jaxws/GetResult.java
680 [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
681 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
682 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
683 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
684 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
685 [wsgen] compbio/data/msa/jaxws/PresetAlign.java
686 [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
687 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
688 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
689 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
690 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
691 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
692 [wsgen] Note: ap round: 2
693 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.DisemblWS
694 [wsgen] Note: ap round: 1
695 [wsgen] [ProcessedMethods Interface: compbio.data.msa.SequenceAnnotation<T>]
696 [wsgen] [should process method: analize hasWebMethods: false ]
697 [wsgen] [endpointReferencesInterface: true]
698 [wsgen] [declaring class has WebSevice: true]
699 [wsgen] [returning: true]
700 [wsgen] [WrapperGen - method: analize(java.util.List<compbio.data.sequence.FastaSequence>)]
701 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
702 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Analize]
703 [wsgen] [should process method: customAnalize hasWebMethods: false ]
704 [wsgen] [endpointReferencesInterface: true]
705 [wsgen] [declaring class has WebSevice: true]
706 [wsgen] [returning: true]
707 [wsgen] [WrapperGen - method: customAnalize(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
708 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
709 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAnalize]
710 [wsgen] [should process method: presetAnalize hasWebMethods: false ]
711 [wsgen] [endpointReferencesInterface: true]
712 [wsgen] [declaring class has WebSevice: true]
713 [wsgen] [returning: true]
714 [wsgen] [WrapperGen - method: presetAnalize(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
715 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
716 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAnalize]
717 [wsgen] [should process method: getAnnotation hasWebMethods: false ]
718 [wsgen] [endpointReferencesInterface: true]
719 [wsgen] [declaring class has WebSevice: true]
720 [wsgen] [returning: true]
721 [wsgen] [WrapperGen - method: getAnnotation(java.lang.String)]
722 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
723 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetAnnotation]
724 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
725 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
726 [wsgen] [should process method: cancelJob hasWebMethods: false ]
727 [wsgen] [endpointReferencesInterface: true]
728 [wsgen] [declaring class has WebSevice: false]
729 [wsgen] [returning: true]
730 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
731 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
732 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
733 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
734 [wsgen] [endpointReferencesInterface: true]
735 [wsgen] [declaring class has WebSevice: false]
736 [wsgen] [returning: true]
737 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
738 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
739 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
740 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
741 [wsgen] [endpointReferencesInterface: true]
742 [wsgen] [declaring class has WebSevice: false]
743 [wsgen] [returning: true]
744 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
745 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
746 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
747 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
748 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
749 [wsgen] [endpointReferencesInterface: true]
750 [wsgen] [declaring class has WebSevice: false]
751 [wsgen] [returning: true]
752 [wsgen] [WrapperGen - method: getRunnerOptions()]
753 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
754 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
755 [wsgen] [should process method: getPresets hasWebMethods: false ]
756 [wsgen] [endpointReferencesInterface: true]
757 [wsgen] [declaring class has WebSevice: false]
758 [wsgen] [returning: true]
759 [wsgen] [WrapperGen - method: getPresets()]
760 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
761 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
762 [wsgen] [should process method: getLimit hasWebMethods: false ]
763 [wsgen] [endpointReferencesInterface: true]
764 [wsgen] [declaring class has WebSevice: false]
765 [wsgen] [returning: true]
766 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
767 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
768 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
769 [wsgen] [should process method: getLimits hasWebMethods: false ]
770 [wsgen] [endpointReferencesInterface: true]
771 [wsgen] [declaring class has WebSevice: false]
772 [wsgen] [returning: true]
773 [wsgen] [WrapperGen - method: getLimits()]
774 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
775 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
776 [wsgen] compbio/data/msa/jaxws/Analize.java
777 [wsgen] compbio/data/msa/jaxws/AnalizeResponse.java
778 [wsgen] compbio/data/msa/jaxws/CancelJob.java
779 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
780 [wsgen] compbio/data/msa/jaxws/CustomAnalize.java
781 [wsgen] compbio/data/msa/jaxws/CustomAnalizeResponse.java
782 [wsgen] compbio/data/msa/jaxws/GetAnnotation.java
783 [wsgen] compbio/data/msa/jaxws/GetAnnotationResponse.java
784 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
785 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
786 [wsgen] compbio/data/msa/jaxws/GetLimit.java
787 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
788 [wsgen] compbio/data/msa/jaxws/GetLimits.java
789 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
790 [wsgen] compbio/data/msa/jaxws/GetPresets.java
791 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
792 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
793 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
794 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
795 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
796 [wsgen] compbio/data/msa/jaxws/PresetAnalize.java
797 [wsgen] compbio/data/msa/jaxws/PresetAnalizeResponse.java
798 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
799 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
800 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
801 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
802 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
803 [wsgen] Note: ap round: 2
804 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.GlobPlotWS
805 [wsgen] Note: ap round: 1
806 [wsgen] [ProcessedMethods Interface: compbio.data.msa.SequenceAnnotation<T>]
807 [wsgen] [should process method: analize hasWebMethods: false ]
808 [wsgen] [endpointReferencesInterface: true]
809 [wsgen] [declaring class has WebSevice: true]
810 [wsgen] [returning: true]
811 [wsgen] [WrapperGen - method: analize(java.util.List<compbio.data.sequence.FastaSequence>)]
812 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
813 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Analize]
814 [wsgen] [should process method: customAnalize hasWebMethods: false ]
815 [wsgen] [endpointReferencesInterface: true]
816 [wsgen] [declaring class has WebSevice: true]
817 [wsgen] [returning: true]
818 [wsgen] [WrapperGen - method: customAnalize(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
819 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
820 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAnalize]
821 [wsgen] [should process method: presetAnalize hasWebMethods: false ]
822 [wsgen] [endpointReferencesInterface: true]
823 [wsgen] [declaring class has WebSevice: true]
824 [wsgen] [returning: true]
825 [wsgen] [WrapperGen - method: presetAnalize(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
826 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
827 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAnalize]
828 [wsgen] [should process method: getAnnotation hasWebMethods: false ]
829 [wsgen] [endpointReferencesInterface: true]
830 [wsgen] [declaring class has WebSevice: true]
831 [wsgen] [returning: true]
832 [wsgen] [WrapperGen - method: getAnnotation(java.lang.String)]
833 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
834 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetAnnotation]
835 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
836 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
837 [wsgen] [should process method: cancelJob hasWebMethods: false ]
838 [wsgen] [endpointReferencesInterface: true]
839 [wsgen] [declaring class has WebSevice: false]
840 [wsgen] [returning: true]
841 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
842 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
843 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
844 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
845 [wsgen] [endpointReferencesInterface: true]
846 [wsgen] [declaring class has WebSevice: false]
847 [wsgen] [returning: true]
848 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
849 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
850 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
851 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
852 [wsgen] [endpointReferencesInterface: true]
853 [wsgen] [declaring class has WebSevice: false]
854 [wsgen] [returning: true]
855 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
856 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
857 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
858 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
859 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
860 [wsgen] [endpointReferencesInterface: true]
861 [wsgen] [declaring class has WebSevice: false]
862 [wsgen] [returning: true]
863 [wsgen] [WrapperGen - method: getRunnerOptions()]
864 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
865 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
866 [wsgen] [should process method: getPresets hasWebMethods: false ]
867 [wsgen] [endpointReferencesInterface: true]
868 [wsgen] [declaring class has WebSevice: false]
869 [wsgen] [returning: true]
870 [wsgen] [WrapperGen - method: getPresets()]
871 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
872 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
873 [wsgen] [should process method: getLimit hasWebMethods: false ]
874 [wsgen] [endpointReferencesInterface: true]
875 [wsgen] [declaring class has WebSevice: false]
876 [wsgen] [returning: true]
877 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
878 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
879 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
880 [wsgen] [should process method: getLimits hasWebMethods: false ]
881 [wsgen] [endpointReferencesInterface: true]
882 [wsgen] [declaring class has WebSevice: false]
883 [wsgen] [returning: true]
884 [wsgen] [WrapperGen - method: getLimits()]
885 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
886 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
887 [wsgen] compbio/data/msa/jaxws/Analize.java
888 [wsgen] compbio/data/msa/jaxws/AnalizeResponse.java
889 [wsgen] compbio/data/msa/jaxws/CancelJob.java
890 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
891 [wsgen] compbio/data/msa/jaxws/CustomAnalize.java
892 [wsgen] compbio/data/msa/jaxws/CustomAnalizeResponse.java
893 [wsgen] compbio/data/msa/jaxws/GetAnnotation.java
894 [wsgen] compbio/data/msa/jaxws/GetAnnotationResponse.java
895 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
896 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
897 [wsgen] compbio/data/msa/jaxws/GetLimit.java
898 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
899 [wsgen] compbio/data/msa/jaxws/GetLimits.java
900 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
901 [wsgen] compbio/data/msa/jaxws/GetPresets.java
902 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
903 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
904 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
905 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
906 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
907 [wsgen] compbio/data/msa/jaxws/PresetAnalize.java
908 [wsgen] compbio/data/msa/jaxws/PresetAnalizeResponse.java
909 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
910 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
911 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
912 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
913 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
914 [wsgen] Note: ap round: 2
915 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.JronnWS
916 [wsgen] Note: ap round: 1
917 [wsgen] [ProcessedMethods Interface: compbio.data.msa.SequenceAnnotation<T>]
918 [wsgen] [should process method: analize hasWebMethods: false ]
919 [wsgen] [endpointReferencesInterface: true]
920 [wsgen] [declaring class has WebSevice: true]
921 [wsgen] [returning: true]
922 [wsgen] [WrapperGen - method: analize(java.util.List<compbio.data.sequence.FastaSequence>)]
923 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
924 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Analize]
925 [wsgen] [should process method: customAnalize hasWebMethods: false ]
926 [wsgen] [endpointReferencesInterface: true]
927 [wsgen] [declaring class has WebSevice: true]
928 [wsgen] [returning: true]
929 [wsgen] [WrapperGen - method: customAnalize(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
930 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
931 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAnalize]
932 [wsgen] [should process method: presetAnalize hasWebMethods: false ]
933 [wsgen] [endpointReferencesInterface: true]
934 [wsgen] [declaring class has WebSevice: true]
935 [wsgen] [returning: true]
936 [wsgen] [WrapperGen - method: presetAnalize(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
937 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
938 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAnalize]
939 [wsgen] [should process method: getAnnotation hasWebMethods: false ]
940 [wsgen] [endpointReferencesInterface: true]
941 [wsgen] [declaring class has WebSevice: true]
942 [wsgen] [returning: true]
943 [wsgen] [WrapperGen - method: getAnnotation(java.lang.String)]
944 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
945 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetAnnotation]
946 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
947 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
948 [wsgen] [should process method: cancelJob hasWebMethods: false ]
949 [wsgen] [endpointReferencesInterface: true]
950 [wsgen] [declaring class has WebSevice: false]
951 [wsgen] [returning: true]
952 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
953 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
954 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
955 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
956 [wsgen] [endpointReferencesInterface: true]
957 [wsgen] [declaring class has WebSevice: false]
958 [wsgen] [returning: true]
959 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
960 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
961 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
962 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
963 [wsgen] [endpointReferencesInterface: true]
964 [wsgen] [declaring class has WebSevice: false]
965 [wsgen] [returning: true]
966 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
967 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
968 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
969 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
970 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
971 [wsgen] [endpointReferencesInterface: true]
972 [wsgen] [declaring class has WebSevice: false]
973 [wsgen] [returning: true]
974 [wsgen] [WrapperGen - method: getRunnerOptions()]
975 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
976 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
977 [wsgen] [should process method: getPresets hasWebMethods: false ]
978 [wsgen] [endpointReferencesInterface: true]
979 [wsgen] [declaring class has WebSevice: false]
980 [wsgen] [returning: true]
981 [wsgen] [WrapperGen - method: getPresets()]
982 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
983 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
984 [wsgen] [should process method: getLimit hasWebMethods: false ]
985 [wsgen] [endpointReferencesInterface: true]
986 [wsgen] [declaring class has WebSevice: false]
987 [wsgen] [returning: true]
988 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
989 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
990 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
991 [wsgen] [should process method: getLimits hasWebMethods: false ]
992 [wsgen] [endpointReferencesInterface: true]
993 [wsgen] [declaring class has WebSevice: false]
994 [wsgen] [returning: true]
995 [wsgen] [WrapperGen - method: getLimits()]
996 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
997 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
998 [wsgen] compbio/data/msa/jaxws/Analize.java
999 [wsgen] compbio/data/msa/jaxws/AnalizeResponse.java
1000 [wsgen] compbio/data/msa/jaxws/CancelJob.java
1001 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
1002 [wsgen] compbio/data/msa/jaxws/CustomAnalize.java
1003 [wsgen] compbio/data/msa/jaxws/CustomAnalizeResponse.java
1004 [wsgen] compbio/data/msa/jaxws/GetAnnotation.java
1005 [wsgen] compbio/data/msa/jaxws/GetAnnotationResponse.java
1006 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
1007 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
1008 [wsgen] compbio/data/msa/jaxws/GetLimit.java
1009 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
1010 [wsgen] compbio/data/msa/jaxws/GetLimits.java
1011 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
1012 [wsgen] compbio/data/msa/jaxws/GetPresets.java
1013 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
1014 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
1015 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
1016 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
1017 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
1018 [wsgen] compbio/data/msa/jaxws/PresetAnalize.java
1019 [wsgen] compbio/data/msa/jaxws/PresetAnalizeResponse.java
1020 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
1021 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
1022 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
1023 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
1024 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
1025 [wsgen] Note: ap round: 2
1026 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.IUPredWS
1027 [wsgen] Note: ap round: 1
1028 [wsgen] [ProcessedMethods Interface: compbio.data.msa.SequenceAnnotation<T>]
1029 [wsgen] [should process method: analize hasWebMethods: false ]
1030 [wsgen] [endpointReferencesInterface: true]
1031 [wsgen] [declaring class has WebSevice: true]
1032 [wsgen] [returning: true]
1033 [wsgen] [WrapperGen - method: analize(java.util.List<compbio.data.sequence.FastaSequence>)]
1034 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1035 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Analize]
1036 [wsgen] [should process method: customAnalize hasWebMethods: false ]
1037 [wsgen] [endpointReferencesInterface: true]
1038 [wsgen] [declaring class has WebSevice: true]
1039 [wsgen] [returning: true]
1040 [wsgen] [WrapperGen - method: customAnalize(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
1041 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1042 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAnalize]
1043 [wsgen] [should process method: presetAnalize hasWebMethods: false ]
1044 [wsgen] [endpointReferencesInterface: true]
1045 [wsgen] [declaring class has WebSevice: true]
1046 [wsgen] [returning: true]
1047 [wsgen] [WrapperGen - method: presetAnalize(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
1048 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1049 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAnalize]
1050 [wsgen] [should process method: getAnnotation hasWebMethods: false ]
1051 [wsgen] [endpointReferencesInterface: true]
1052 [wsgen] [declaring class has WebSevice: true]
1053 [wsgen] [returning: true]
1054 [wsgen] [WrapperGen - method: getAnnotation(java.lang.String)]
1055 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1056 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetAnnotation]
1057 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
1058 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
1059 [wsgen] [should process method: cancelJob hasWebMethods: false ]
1060 [wsgen] [endpointReferencesInterface: true]
1061 [wsgen] [declaring class has WebSevice: false]
1062 [wsgen] [returning: true]
1063 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
1064 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1065 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
1066 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
1067 [wsgen] [endpointReferencesInterface: true]
1068 [wsgen] [declaring class has WebSevice: false]
1069 [wsgen] [returning: true]
1070 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
1071 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1072 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
1073 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
1074 [wsgen] [endpointReferencesInterface: true]
1075 [wsgen] [declaring class has WebSevice: false]
1076 [wsgen] [returning: true]
1077 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
1078 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1079 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
1080 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
1081 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
1082 [wsgen] [endpointReferencesInterface: true]
1083 [wsgen] [declaring class has WebSevice: false]
1084 [wsgen] [returning: true]
1085 [wsgen] [WrapperGen - method: getRunnerOptions()]
1086 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1087 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
1088 [wsgen] [should process method: getPresets hasWebMethods: false ]
1089 [wsgen] [endpointReferencesInterface: true]
1090 [wsgen] [declaring class has WebSevice: false]
1091 [wsgen] [returning: true]
1092 [wsgen] [WrapperGen - method: getPresets()]
1093 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1094 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
1095 [wsgen] [should process method: getLimit hasWebMethods: false ]
1096 [wsgen] [endpointReferencesInterface: true]
1097 [wsgen] [declaring class has WebSevice: false]
1098 [wsgen] [returning: true]
1099 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
1100 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1101 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
1102 [wsgen] [should process method: getLimits hasWebMethods: false ]
1103 [wsgen] [endpointReferencesInterface: true]
1104 [wsgen] [declaring class has WebSevice: false]
1105 [wsgen] [returning: true]
1106 [wsgen] [WrapperGen - method: getLimits()]
1107 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1108 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
1109 [wsgen] compbio/data/msa/jaxws/Analize.java
1110 [wsgen] compbio/data/msa/jaxws/AnalizeResponse.java
1111 [wsgen] compbio/data/msa/jaxws/CancelJob.java
1112 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
1113 [wsgen] compbio/data/msa/jaxws/CustomAnalize.java
1114 [wsgen] compbio/data/msa/jaxws/CustomAnalizeResponse.java
1115 [wsgen] compbio/data/msa/jaxws/GetAnnotation.java
1116 [wsgen] compbio/data/msa/jaxws/GetAnnotationResponse.java
1117 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
1118 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
1119 [wsgen] compbio/data/msa/jaxws/GetLimit.java
1120 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
1121 [wsgen] compbio/data/msa/jaxws/GetLimits.java
1122 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
1123 [wsgen] compbio/data/msa/jaxws/GetPresets.java
1124 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
1125 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
1126 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
1127 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
1128 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
1129 [wsgen] compbio/data/msa/jaxws/PresetAnalize.java
1130 [wsgen] compbio/data/msa/jaxws/PresetAnalizeResponse.java
1131 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
1132 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
1133 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
1134 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
1135 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
1136 [wsgen] Note: ap round: 2
1137 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.RegistryWS
1138 [wsgen] Note: ap round: 1
1139 [wsgen] [ProcessedMethods Interface: compbio.data.msa.RegistryWS]
1140 [wsgen] [should process method: getSupportedServices hasWebMethods: false ]
1141 [wsgen] [endpointReferencesInterface: true]
1142 [wsgen] [declaring class has WebSevice: true]
1143 [wsgen] [returning: true]
1144 [wsgen] [WrapperGen - method: getSupportedServices()]
1145 [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1146 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetSupportedServices]
1147 [wsgen] [should process method: getNonoperatedServices hasWebMethods: false ]
1148 [wsgen] [endpointReferencesInterface: true]
1149 [wsgen] [declaring class has WebSevice: true]
1150 [wsgen] [returning: true]
1151 [wsgen] [WrapperGen - method: getNonoperatedServices()]
1152 [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1153 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetNonoperatedServices]
1154 [wsgen] [should process method: getLastTested hasWebMethods: false ]
1155 [wsgen] [endpointReferencesInterface: true]
1156 [wsgen] [declaring class has WebSevice: true]
1157 [wsgen] [returning: true]
1158 [wsgen] [WrapperGen - method: getLastTested(compbio.ws.client.Services)]
1159 [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1160 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLastTested]
1161 [wsgen] [should process method: getLastTestedOn hasWebMethods: false ]
1162 [wsgen] [endpointReferencesInterface: true]
1163 [wsgen] [declaring class has WebSevice: true]
1164 [wsgen] [returning: true]
1165 [wsgen] [WrapperGen - method: getLastTestedOn(compbio.ws.client.Services)]
1166 [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1167 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLastTestedOn]
1168 [wsgen] [should process method: testAllServices hasWebMethods: false ]
1169 [wsgen] [endpointReferencesInterface: true]
1170 [wsgen] [declaring class has WebSevice: true]
1171 [wsgen] [returning: true]
1172 [wsgen] [WrapperGen - method: testAllServices()]
1173 [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1174 [wsgen] [requestWrapper: compbio.data.msa.jaxws.TestAllServices]
1175 [wsgen] [should process method: testService hasWebMethods: false ]
1176 [wsgen] [endpointReferencesInterface: true]
1177 [wsgen] [declaring class has WebSevice: true]
1178 [wsgen] [returning: true]
1179 [wsgen] [WrapperGen - method: testService(compbio.ws.client.Services)]
1180 [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1181 [wsgen] [requestWrapper: compbio.data.msa.jaxws.TestService]
1182 [wsgen] [should process method: isOperating hasWebMethods: false ]
1183 [wsgen] [endpointReferencesInterface: true]
1184 [wsgen] [declaring class has WebSevice: true]
1185 [wsgen] [returning: true]
1186 [wsgen] [WrapperGen - method: isOperating(compbio.ws.client.Services)]
1187 [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1188 [wsgen] [requestWrapper: compbio.data.msa.jaxws.IsOperating]
1189 [wsgen] [should process method: getServiceDescription hasWebMethods: false ]
1190 [wsgen] [endpointReferencesInterface: true]
1191 [wsgen] [declaring class has WebSevice: true]
1192 [wsgen] [returning: true]
1193 [wsgen] [WrapperGen - method: getServiceDescription(compbio.ws.client.Services)]
1194 [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1195 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetServiceDescription]
1196 [wsgen] [should process method: getServiceCategories hasWebMethods: false ]
1197 [wsgen] [endpointReferencesInterface: true]
1198 [wsgen] [declaring class has WebSevice: true]
1199 [wsgen] [returning: true]
1200 [wsgen] [WrapperGen - method: getServiceCategories()]
1201 [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1202 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetServiceCategories]
1203 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
1204 [wsgen] compbio/data/msa/jaxws/GetLastTested.java
1205 [wsgen] compbio/data/msa/jaxws/GetLastTestedOn.java
1206 [wsgen] compbio/data/msa/jaxws/GetLastTestedOnResponse.java
1207 [wsgen] compbio/data/msa/jaxws/GetLastTestedResponse.java
1208 [wsgen] compbio/data/msa/jaxws/GetNonoperatedServices.java
1209 [wsgen] compbio/data/msa/jaxws/GetNonoperatedServicesResponse.java
1210 [wsgen] compbio/data/msa/jaxws/GetServiceCategories.java
1211 [wsgen] compbio/data/msa/jaxws/GetServiceCategoriesResponse.java
1212 [wsgen] compbio/data/msa/jaxws/GetServiceDescription.java
1213 [wsgen] compbio/data/msa/jaxws/GetServiceDescriptionResponse.java
1214 [wsgen] compbio/data/msa/jaxws/GetSupportedServices.java
1215 [wsgen] compbio/data/msa/jaxws/GetSupportedServicesResponse.java
1216 [wsgen] compbio/data/msa/jaxws/IsOperating.java
1217 [wsgen] compbio/data/msa/jaxws/IsOperatingResponse.java
1218 [wsgen] compbio/data/msa/jaxws/TestAllServices.java
1219 [wsgen] compbio/data/msa/jaxws/TestAllServicesResponse.java
1220 [wsgen] compbio/data/msa/jaxws/TestService.java
1221 [wsgen] compbio/data/msa/jaxws/TestServiceResponse.java
1222 [wsgen] Note: ap round: 2
1223 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.RNAalifoldWS
1224 [wsgen] Note: ap round: 1
1225 [wsgen] [ProcessedMethods Interface: compbio.data.msa.SequenceAnnotation<T>]
1226 [wsgen] [should process method: analize hasWebMethods: false ]
1227 [wsgen] [endpointReferencesInterface: true]
1228 [wsgen] [declaring class has WebSevice: true]
1229 [wsgen] [returning: true]
1230 [wsgen] [WrapperGen - method: analize(java.util.List<compbio.data.sequence.FastaSequence>)]
1231 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1232 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Analize]
1233 [wsgen] [should process method: customAnalize hasWebMethods: false ]
1234 [wsgen] [endpointReferencesInterface: true]
1235 [wsgen] [declaring class has WebSevice: true]
1236 [wsgen] [returning: true]
1237 [wsgen] [WrapperGen - method: customAnalize(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
1238 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1239 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAnalize]
1240 [wsgen] [should process method: presetAnalize hasWebMethods: false ]
1241 [wsgen] [endpointReferencesInterface: true]
1242 [wsgen] [declaring class has WebSevice: true]
1243 [wsgen] [returning: true]
1244 [wsgen] [WrapperGen - method: presetAnalize(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
1245 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1246 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAnalize]
1247 [wsgen] [should process method: getAnnotation hasWebMethods: false ]
1248 [wsgen] [endpointReferencesInterface: true]
1249 [wsgen] [declaring class has WebSevice: true]
1250 [wsgen] [returning: true]
1251 [wsgen] [WrapperGen - method: getAnnotation(java.lang.String)]
1252 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1253 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetAnnotation]
1254 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
1255 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
1256 [wsgen] [should process method: cancelJob hasWebMethods: false ]
1257 [wsgen] [endpointReferencesInterface: true]
1258 [wsgen] [declaring class has WebSevice: false]
1259 [wsgen] [returning: true]
1260 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
1261 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1262 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
1263 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
1264 [wsgen] [endpointReferencesInterface: true]
1265 [wsgen] [declaring class has WebSevice: false]
1266 [wsgen] [returning: true]
1267 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
1268 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1269 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
1270 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
1271 [wsgen] [endpointReferencesInterface: true]
1272 [wsgen] [declaring class has WebSevice: false]
1273 [wsgen] [returning: true]
1274 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
1275 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1276 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
1277 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
1278 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
1279 [wsgen] [endpointReferencesInterface: true]
1280 [wsgen] [declaring class has WebSevice: false]
1281 [wsgen] [returning: true]
1282 [wsgen] [WrapperGen - method: getRunnerOptions()]
1283 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1284 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
1285 [wsgen] [should process method: getPresets hasWebMethods: false ]
1286 [wsgen] [endpointReferencesInterface: true]
1287 [wsgen] [declaring class has WebSevice: false]
1288 [wsgen] [returning: true]
1289 [wsgen] [WrapperGen - method: getPresets()]
1290 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1291 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
1292 [wsgen] [should process method: getLimit hasWebMethods: false ]
1293 [wsgen] [endpointReferencesInterface: true]
1294 [wsgen] [declaring class has WebSevice: false]
1295 [wsgen] [returning: true]
1296 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
1297 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1298 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
1299 [wsgen] [should process method: getLimits hasWebMethods: false ]
1300 [wsgen] [endpointReferencesInterface: true]
1301 [wsgen] [declaring class has WebSevice: false]
1302 [wsgen] [returning: true]
1303 [wsgen] [WrapperGen - method: getLimits()]
1304 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1305 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
1306 [wsgen] compbio/data/msa/jaxws/Analize.java
1307 [wsgen] compbio/data/msa/jaxws/AnalizeResponse.java
1308 [wsgen] compbio/data/msa/jaxws/CancelJob.java
1309 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
1310 [wsgen] compbio/data/msa/jaxws/CustomAnalize.java
1311 [wsgen] compbio/data/msa/jaxws/CustomAnalizeResponse.java
1312 [wsgen] compbio/data/msa/jaxws/GetAnnotation.java
1313 [wsgen] compbio/data/msa/jaxws/GetAnnotationResponse.java
1314 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
1315 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
1316 [wsgen] compbio/data/msa/jaxws/GetLimit.java
1317 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
1318 [wsgen] compbio/data/msa/jaxws/GetLimits.java
1319 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
1320 [wsgen] compbio/data/msa/jaxws/GetPresets.java
1321 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
1322 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
1323 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
1324 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
1325 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
1326 [wsgen] compbio/data/msa/jaxws/PresetAnalize.java
1327 [wsgen] compbio/data/msa/jaxws/PresetAnalizeResponse.java
1328 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
1329 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
1330 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
1331 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
1332 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
1333 [wsgen] Note: ap round: 2
1336 Total time: 9 seconds