3 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/AAConWS.wsdl
4 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/AAConWS_schema1.xsd
5 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/ClustalWS.wsdl
6 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/ClustalWS_schema1.xsd
7 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/DisemblWS.wsdl
8 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/DisemblWS_schema1.xsd
9 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/GLprobsWS.wsdl
10 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/GlobPlotWS.wsdl
11 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/GlobPlotWS_schema1.xsd
12 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/IUPredWS.wsdl
13 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/IUPredWS_schema1.xsd
14 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/JpredWS.wsdl
15 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/JronnWS.wsdl
16 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/JronnWS_schema1.xsd
17 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MSAprobsWS.wsdl
18 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MafftWS.wsdl
19 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MafftWS_schema1.xsd
20 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MsaWS.wsdl
21 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MsaWS_schema1.xsd
22 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MuscleWS.wsdl
23 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MuscleWS_schema1.xsd
24 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/RNAalifoldWS.wsdl
25 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/RNAalifoldWS_schema1.xsd
26 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/RegistryWS.wsdl
27 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/RegistryWS_schema1.xsd
28 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/TcoffeeWS.wsdl
29 [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/TcoffeeWS_schema1.xsd
30 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.JpredWS
31 [wsgen] Note: ap round: 1
32 [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
33 [wsgen] [should process method: align hasWebMethods: false ]
34 [wsgen] [endpointReferencesInterface: true]
35 [wsgen] [declaring class has WebSevice: true]
36 [wsgen] [returning: true]
37 [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
38 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
39 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
40 [wsgen] [should process method: customAlign hasWebMethods: false ]
41 [wsgen] [endpointReferencesInterface: true]
42 [wsgen] [declaring class has WebSevice: true]
43 [wsgen] [returning: true]
44 [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
45 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
46 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
47 [wsgen] [should process method: presetAlign hasWebMethods: false ]
48 [wsgen] [endpointReferencesInterface: true]
49 [wsgen] [declaring class has WebSevice: true]
50 [wsgen] [returning: true]
51 [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
52 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
53 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
54 [wsgen] [should process method: getResult hasWebMethods: false ]
55 [wsgen] [endpointReferencesInterface: true]
56 [wsgen] [declaring class has WebSevice: true]
57 [wsgen] [returning: true]
58 [wsgen] [WrapperGen - method: getResult(java.lang.String)]
59 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
60 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
61 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
62 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
63 [wsgen] [should process method: cancelJob hasWebMethods: false ]
64 [wsgen] [endpointReferencesInterface: true]
65 [wsgen] [declaring class has WebSevice: false]
66 [wsgen] [returning: true]
67 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
68 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
69 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
70 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
71 [wsgen] [endpointReferencesInterface: true]
72 [wsgen] [declaring class has WebSevice: false]
73 [wsgen] [returning: true]
74 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
75 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
76 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
77 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
78 [wsgen] [endpointReferencesInterface: true]
79 [wsgen] [declaring class has WebSevice: false]
80 [wsgen] [returning: true]
81 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
82 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
83 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
84 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
85 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
86 [wsgen] [endpointReferencesInterface: true]
87 [wsgen] [declaring class has WebSevice: false]
88 [wsgen] [returning: true]
89 [wsgen] [WrapperGen - method: getRunnerOptions()]
90 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
91 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
92 [wsgen] [should process method: getPresets hasWebMethods: false ]
93 [wsgen] [endpointReferencesInterface: true]
94 [wsgen] [declaring class has WebSevice: false]
95 [wsgen] [returning: true]
96 [wsgen] [WrapperGen - method: getPresets()]
97 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
98 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
99 [wsgen] [should process method: getLimit hasWebMethods: false ]
100 [wsgen] [endpointReferencesInterface: true]
101 [wsgen] [declaring class has WebSevice: false]
102 [wsgen] [returning: true]
103 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
104 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
105 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
106 [wsgen] [should process method: getLimits hasWebMethods: false ]
107 [wsgen] [endpointReferencesInterface: true]
108 [wsgen] [declaring class has WebSevice: false]
109 [wsgen] [returning: true]
110 [wsgen] [WrapperGen - method: getLimits()]
111 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
112 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
113 [wsgen] compbio/data/msa/jaxws/Align.java
114 [wsgen] compbio/data/msa/jaxws/AlignResponse.java
115 [wsgen] compbio/data/msa/jaxws/CancelJob.java
116 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
117 [wsgen] compbio/data/msa/jaxws/CustomAlign.java
118 [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
119 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
120 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
121 [wsgen] compbio/data/msa/jaxws/GetLimit.java
122 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
123 [wsgen] compbio/data/msa/jaxws/GetLimits.java
124 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
125 [wsgen] compbio/data/msa/jaxws/GetPresets.java
126 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
127 [wsgen] compbio/data/msa/jaxws/GetResult.java
128 [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
129 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
130 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
131 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
132 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
133 [wsgen] compbio/data/msa/jaxws/PresetAlign.java
134 [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
135 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
136 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
137 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
138 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
139 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
140 [wsgen] Note: ap round: 2
141 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.AAConWS
142 [wsgen] Note: ap round: 1
143 [wsgen] [ProcessedMethods Interface: compbio.data.msa.SequenceAnnotation<T>]
144 [wsgen] [should process method: analize hasWebMethods: false ]
145 [wsgen] [endpointReferencesInterface: true]
146 [wsgen] [declaring class has WebSevice: true]
147 [wsgen] [returning: true]
148 [wsgen] [WrapperGen - method: analize(java.util.List<compbio.data.sequence.FastaSequence>)]
149 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
150 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Analize]
151 [wsgen] [should process method: customAnalize hasWebMethods: false ]
152 [wsgen] [endpointReferencesInterface: true]
153 [wsgen] [declaring class has WebSevice: true]
154 [wsgen] [returning: true]
155 [wsgen] [WrapperGen - method: customAnalize(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
156 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
157 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAnalize]
158 [wsgen] [should process method: presetAnalize hasWebMethods: false ]
159 [wsgen] [endpointReferencesInterface: true]
160 [wsgen] [declaring class has WebSevice: true]
161 [wsgen] [returning: true]
162 [wsgen] [WrapperGen - method: presetAnalize(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
163 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
164 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAnalize]
165 [wsgen] [should process method: getAnnotation hasWebMethods: false ]
166 [wsgen] [endpointReferencesInterface: true]
167 [wsgen] [declaring class has WebSevice: true]
168 [wsgen] [returning: true]
169 [wsgen] [WrapperGen - method: getAnnotation(java.lang.String)]
170 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
171 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetAnnotation]
172 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
173 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
174 [wsgen] [should process method: cancelJob hasWebMethods: false ]
175 [wsgen] [endpointReferencesInterface: true]
176 [wsgen] [declaring class has WebSevice: false]
177 [wsgen] [returning: true]
178 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
179 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
180 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
181 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
182 [wsgen] [endpointReferencesInterface: true]
183 [wsgen] [declaring class has WebSevice: false]
184 [wsgen] [returning: true]
185 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
186 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
187 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
188 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
189 [wsgen] [endpointReferencesInterface: true]
190 [wsgen] [declaring class has WebSevice: false]
191 [wsgen] [returning: true]
192 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
193 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
194 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
195 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
196 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
197 [wsgen] [endpointReferencesInterface: true]
198 [wsgen] [declaring class has WebSevice: false]
199 [wsgen] [returning: true]
200 [wsgen] [WrapperGen - method: getRunnerOptions()]
201 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
202 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
203 [wsgen] [should process method: getPresets hasWebMethods: false ]
204 [wsgen] [endpointReferencesInterface: true]
205 [wsgen] [declaring class has WebSevice: false]
206 [wsgen] [returning: true]
207 [wsgen] [WrapperGen - method: getPresets()]
208 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
209 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
210 [wsgen] [should process method: getLimit hasWebMethods: false ]
211 [wsgen] [endpointReferencesInterface: true]
212 [wsgen] [declaring class has WebSevice: false]
213 [wsgen] [returning: true]
214 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
215 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
216 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
217 [wsgen] [should process method: getLimits hasWebMethods: false ]
218 [wsgen] [endpointReferencesInterface: true]
219 [wsgen] [declaring class has WebSevice: false]
220 [wsgen] [returning: true]
221 [wsgen] [WrapperGen - method: getLimits()]
222 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
223 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
224 [wsgen] compbio/data/msa/jaxws/Analize.java
225 [wsgen] compbio/data/msa/jaxws/AnalizeResponse.java
226 [wsgen] compbio/data/msa/jaxws/CancelJob.java
227 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
228 [wsgen] compbio/data/msa/jaxws/CustomAnalize.java
229 [wsgen] compbio/data/msa/jaxws/CustomAnalizeResponse.java
230 [wsgen] compbio/data/msa/jaxws/GetAnnotation.java
231 [wsgen] compbio/data/msa/jaxws/GetAnnotationResponse.java
232 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
233 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
234 [wsgen] compbio/data/msa/jaxws/GetLimit.java
235 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
236 [wsgen] compbio/data/msa/jaxws/GetLimits.java
237 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
238 [wsgen] compbio/data/msa/jaxws/GetPresets.java
239 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
240 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
241 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
242 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
243 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
244 [wsgen] compbio/data/msa/jaxws/PresetAnalize.java
245 [wsgen] compbio/data/msa/jaxws/PresetAnalizeResponse.java
246 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
247 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
248 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
249 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
250 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
251 [wsgen] Note: ap round: 2
252 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.MSAprobsWS
253 [wsgen] Note: ap round: 1
254 [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
255 [wsgen] [should process method: align hasWebMethods: false ]
256 [wsgen] [endpointReferencesInterface: true]
257 [wsgen] [declaring class has WebSevice: true]
258 [wsgen] [returning: true]
259 [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
260 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
261 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
262 [wsgen] [should process method: customAlign hasWebMethods: false ]
263 [wsgen] [endpointReferencesInterface: true]
264 [wsgen] [declaring class has WebSevice: true]
265 [wsgen] [returning: true]
266 [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
267 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
268 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
269 [wsgen] [should process method: presetAlign hasWebMethods: false ]
270 [wsgen] [endpointReferencesInterface: true]
271 [wsgen] [declaring class has WebSevice: true]
272 [wsgen] [returning: true]
273 [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
274 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
275 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
276 [wsgen] [should process method: getResult hasWebMethods: false ]
277 [wsgen] [endpointReferencesInterface: true]
278 [wsgen] [declaring class has WebSevice: true]
279 [wsgen] [returning: true]
280 [wsgen] [WrapperGen - method: getResult(java.lang.String)]
281 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
282 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
283 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
284 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
285 [wsgen] [should process method: cancelJob hasWebMethods: false ]
286 [wsgen] [endpointReferencesInterface: true]
287 [wsgen] [declaring class has WebSevice: false]
288 [wsgen] [returning: true]
289 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
290 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
291 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
292 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
293 [wsgen] [endpointReferencesInterface: true]
294 [wsgen] [declaring class has WebSevice: false]
295 [wsgen] [returning: true]
296 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
297 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
298 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
299 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
300 [wsgen] [endpointReferencesInterface: true]
301 [wsgen] [declaring class has WebSevice: false]
302 [wsgen] [returning: true]
303 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
304 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
305 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
306 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
307 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
308 [wsgen] [endpointReferencesInterface: true]
309 [wsgen] [declaring class has WebSevice: false]
310 [wsgen] [returning: true]
311 [wsgen] [WrapperGen - method: getRunnerOptions()]
312 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
313 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
314 [wsgen] [should process method: getPresets hasWebMethods: false ]
315 [wsgen] [endpointReferencesInterface: true]
316 [wsgen] [declaring class has WebSevice: false]
317 [wsgen] [returning: true]
318 [wsgen] [WrapperGen - method: getPresets()]
319 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
320 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
321 [wsgen] [should process method: getLimit hasWebMethods: false ]
322 [wsgen] [endpointReferencesInterface: true]
323 [wsgen] [declaring class has WebSevice: false]
324 [wsgen] [returning: true]
325 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
326 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
327 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
328 [wsgen] [should process method: getLimits hasWebMethods: false ]
329 [wsgen] [endpointReferencesInterface: true]
330 [wsgen] [declaring class has WebSevice: false]
331 [wsgen] [returning: true]
332 [wsgen] [WrapperGen - method: getLimits()]
333 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
334 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
335 [wsgen] compbio/data/msa/jaxws/Align.java
336 [wsgen] compbio/data/msa/jaxws/AlignResponse.java
337 [wsgen] compbio/data/msa/jaxws/CancelJob.java
338 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
339 [wsgen] compbio/data/msa/jaxws/CustomAlign.java
340 [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
341 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
342 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
343 [wsgen] compbio/data/msa/jaxws/GetLimit.java
344 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
345 [wsgen] compbio/data/msa/jaxws/GetLimits.java
346 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
347 [wsgen] compbio/data/msa/jaxws/GetPresets.java
348 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
349 [wsgen] compbio/data/msa/jaxws/GetResult.java
350 [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
351 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
352 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
353 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
354 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
355 [wsgen] compbio/data/msa/jaxws/PresetAlign.java
356 [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
357 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
358 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
359 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
360 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
361 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
362 [wsgen] Note: ap round: 2
363 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.GLprobsWS
364 [wsgen] Note: ap round: 1
365 [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
366 [wsgen] [should process method: align hasWebMethods: false ]
367 [wsgen] [endpointReferencesInterface: true]
368 [wsgen] [declaring class has WebSevice: true]
369 [wsgen] [returning: true]
370 [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
371 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
372 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
373 [wsgen] [should process method: customAlign hasWebMethods: false ]
374 [wsgen] [endpointReferencesInterface: true]
375 [wsgen] [declaring class has WebSevice: true]
376 [wsgen] [returning: true]
377 [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
378 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
379 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
380 [wsgen] [should process method: presetAlign hasWebMethods: false ]
381 [wsgen] [endpointReferencesInterface: true]
382 [wsgen] [declaring class has WebSevice: true]
383 [wsgen] [returning: true]
384 [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
385 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
386 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
387 [wsgen] [should process method: getResult hasWebMethods: false ]
388 [wsgen] [endpointReferencesInterface: true]
389 [wsgen] [declaring class has WebSevice: true]
390 [wsgen] [returning: true]
391 [wsgen] [WrapperGen - method: getResult(java.lang.String)]
392 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
393 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
394 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
395 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
396 [wsgen] [should process method: cancelJob hasWebMethods: false ]
397 [wsgen] [endpointReferencesInterface: true]
398 [wsgen] [declaring class has WebSevice: false]
399 [wsgen] [returning: true]
400 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
401 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
402 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
403 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
404 [wsgen] [endpointReferencesInterface: true]
405 [wsgen] [declaring class has WebSevice: false]
406 [wsgen] [returning: true]
407 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
408 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
409 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
410 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
411 [wsgen] [endpointReferencesInterface: true]
412 [wsgen] [declaring class has WebSevice: false]
413 [wsgen] [returning: true]
414 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
415 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
416 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
417 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
418 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
419 [wsgen] [endpointReferencesInterface: true]
420 [wsgen] [declaring class has WebSevice: false]
421 [wsgen] [returning: true]
422 [wsgen] [WrapperGen - method: getRunnerOptions()]
423 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
424 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
425 [wsgen] [should process method: getPresets hasWebMethods: false ]
426 [wsgen] [endpointReferencesInterface: true]
427 [wsgen] [declaring class has WebSevice: false]
428 [wsgen] [returning: true]
429 [wsgen] [WrapperGen - method: getPresets()]
430 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
431 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
432 [wsgen] [should process method: getLimit hasWebMethods: false ]
433 [wsgen] [endpointReferencesInterface: true]
434 [wsgen] [declaring class has WebSevice: false]
435 [wsgen] [returning: true]
436 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
437 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
438 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
439 [wsgen] [should process method: getLimits hasWebMethods: false ]
440 [wsgen] [endpointReferencesInterface: true]
441 [wsgen] [declaring class has WebSevice: false]
442 [wsgen] [returning: true]
443 [wsgen] [WrapperGen - method: getLimits()]
444 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
445 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
446 [wsgen] compbio/data/msa/jaxws/Align.java
447 [wsgen] compbio/data/msa/jaxws/AlignResponse.java
448 [wsgen] compbio/data/msa/jaxws/CancelJob.java
449 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
450 [wsgen] compbio/data/msa/jaxws/CustomAlign.java
451 [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
452 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
453 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
454 [wsgen] compbio/data/msa/jaxws/GetLimit.java
455 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
456 [wsgen] compbio/data/msa/jaxws/GetLimits.java
457 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
458 [wsgen] compbio/data/msa/jaxws/GetPresets.java
459 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
460 [wsgen] compbio/data/msa/jaxws/GetResult.java
461 [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
462 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
463 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
464 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
465 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
466 [wsgen] compbio/data/msa/jaxws/PresetAlign.java
467 [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
468 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
469 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
470 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
471 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
472 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
473 [wsgen] Note: ap round: 2
474 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.ClustalWS
475 [wsgen] Note: ap round: 1
476 [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
477 [wsgen] [should process method: align hasWebMethods: false ]
478 [wsgen] [endpointReferencesInterface: true]
479 [wsgen] [declaring class has WebSevice: true]
480 [wsgen] [returning: true]
481 [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
482 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
483 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
484 [wsgen] [should process method: customAlign hasWebMethods: false ]
485 [wsgen] [endpointReferencesInterface: true]
486 [wsgen] [declaring class has WebSevice: true]
487 [wsgen] [returning: true]
488 [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
489 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
490 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
491 [wsgen] [should process method: presetAlign hasWebMethods: false ]
492 [wsgen] [endpointReferencesInterface: true]
493 [wsgen] [declaring class has WebSevice: true]
494 [wsgen] [returning: true]
495 [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
496 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
497 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
498 [wsgen] [should process method: getResult hasWebMethods: false ]
499 [wsgen] [endpointReferencesInterface: true]
500 [wsgen] [declaring class has WebSevice: true]
501 [wsgen] [returning: true]
502 [wsgen] [WrapperGen - method: getResult(java.lang.String)]
503 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
504 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
505 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
506 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
507 [wsgen] [should process method: cancelJob hasWebMethods: false ]
508 [wsgen] [endpointReferencesInterface: true]
509 [wsgen] [declaring class has WebSevice: false]
510 [wsgen] [returning: true]
511 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
512 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
513 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
514 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
515 [wsgen] [endpointReferencesInterface: true]
516 [wsgen] [declaring class has WebSevice: false]
517 [wsgen] [returning: true]
518 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
519 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
520 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
521 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
522 [wsgen] [endpointReferencesInterface: true]
523 [wsgen] [declaring class has WebSevice: false]
524 [wsgen] [returning: true]
525 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
526 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
527 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
528 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
529 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
530 [wsgen] [endpointReferencesInterface: true]
531 [wsgen] [declaring class has WebSevice: false]
532 [wsgen] [returning: true]
533 [wsgen] [WrapperGen - method: getRunnerOptions()]
534 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
535 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
536 [wsgen] [should process method: getPresets hasWebMethods: false ]
537 [wsgen] [endpointReferencesInterface: true]
538 [wsgen] [declaring class has WebSevice: false]
539 [wsgen] [returning: true]
540 [wsgen] [WrapperGen - method: getPresets()]
541 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
542 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
543 [wsgen] [should process method: getLimit hasWebMethods: false ]
544 [wsgen] [endpointReferencesInterface: true]
545 [wsgen] [declaring class has WebSevice: false]
546 [wsgen] [returning: true]
547 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
548 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
549 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
550 [wsgen] [should process method: getLimits hasWebMethods: false ]
551 [wsgen] [endpointReferencesInterface: true]
552 [wsgen] [declaring class has WebSevice: false]
553 [wsgen] [returning: true]
554 [wsgen] [WrapperGen - method: getLimits()]
555 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
556 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
557 [wsgen] compbio/data/msa/jaxws/Align.java
558 [wsgen] compbio/data/msa/jaxws/AlignResponse.java
559 [wsgen] compbio/data/msa/jaxws/CancelJob.java
560 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
561 [wsgen] compbio/data/msa/jaxws/CustomAlign.java
562 [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
563 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
564 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
565 [wsgen] compbio/data/msa/jaxws/GetLimit.java
566 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
567 [wsgen] compbio/data/msa/jaxws/GetLimits.java
568 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
569 [wsgen] compbio/data/msa/jaxws/GetPresets.java
570 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
571 [wsgen] compbio/data/msa/jaxws/GetResult.java
572 [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
573 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
574 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
575 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
576 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
577 [wsgen] compbio/data/msa/jaxws/PresetAlign.java
578 [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
579 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
580 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
581 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
582 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
583 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
584 [wsgen] Note: ap round: 2
585 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.MuscleWS
586 [wsgen] Note: ap round: 1
587 [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
588 [wsgen] [should process method: align hasWebMethods: false ]
589 [wsgen] [endpointReferencesInterface: true]
590 [wsgen] [declaring class has WebSevice: true]
591 [wsgen] [returning: true]
592 [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
593 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
594 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
595 [wsgen] [should process method: customAlign hasWebMethods: false ]
596 [wsgen] [endpointReferencesInterface: true]
597 [wsgen] [declaring class has WebSevice: true]
598 [wsgen] [returning: true]
599 [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
600 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
601 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
602 [wsgen] [should process method: presetAlign hasWebMethods: false ]
603 [wsgen] [endpointReferencesInterface: true]
604 [wsgen] [declaring class has WebSevice: true]
605 [wsgen] [returning: true]
606 [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
607 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
608 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
609 [wsgen] [should process method: getResult hasWebMethods: false ]
610 [wsgen] [endpointReferencesInterface: true]
611 [wsgen] [declaring class has WebSevice: true]
612 [wsgen] [returning: true]
613 [wsgen] [WrapperGen - method: getResult(java.lang.String)]
614 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
615 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
616 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
617 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
618 [wsgen] [should process method: cancelJob hasWebMethods: false ]
619 [wsgen] [endpointReferencesInterface: true]
620 [wsgen] [declaring class has WebSevice: false]
621 [wsgen] [returning: true]
622 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
623 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
624 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
625 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
626 [wsgen] [endpointReferencesInterface: true]
627 [wsgen] [declaring class has WebSevice: false]
628 [wsgen] [returning: true]
629 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
630 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
631 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
632 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
633 [wsgen] [endpointReferencesInterface: true]
634 [wsgen] [declaring class has WebSevice: false]
635 [wsgen] [returning: true]
636 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
637 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
638 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
639 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
640 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
641 [wsgen] [endpointReferencesInterface: true]
642 [wsgen] [declaring class has WebSevice: false]
643 [wsgen] [returning: true]
644 [wsgen] [WrapperGen - method: getRunnerOptions()]
645 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
646 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
647 [wsgen] [should process method: getPresets hasWebMethods: false ]
648 [wsgen] [endpointReferencesInterface: true]
649 [wsgen] [declaring class has WebSevice: false]
650 [wsgen] [returning: true]
651 [wsgen] [WrapperGen - method: getPresets()]
652 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
653 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
654 [wsgen] [should process method: getLimit hasWebMethods: false ]
655 [wsgen] [endpointReferencesInterface: true]
656 [wsgen] [declaring class has WebSevice: false]
657 [wsgen] [returning: true]
658 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
659 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
660 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
661 [wsgen] [should process method: getLimits hasWebMethods: false ]
662 [wsgen] [endpointReferencesInterface: true]
663 [wsgen] [declaring class has WebSevice: false]
664 [wsgen] [returning: true]
665 [wsgen] [WrapperGen - method: getLimits()]
666 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
667 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
668 [wsgen] compbio/data/msa/jaxws/Align.java
669 [wsgen] compbio/data/msa/jaxws/AlignResponse.java
670 [wsgen] compbio/data/msa/jaxws/CancelJob.java
671 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
672 [wsgen] compbio/data/msa/jaxws/CustomAlign.java
673 [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
674 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
675 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
676 [wsgen] compbio/data/msa/jaxws/GetLimit.java
677 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
678 [wsgen] compbio/data/msa/jaxws/GetLimits.java
679 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
680 [wsgen] compbio/data/msa/jaxws/GetPresets.java
681 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
682 [wsgen] compbio/data/msa/jaxws/GetResult.java
683 [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
684 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
685 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
686 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
687 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
688 [wsgen] compbio/data/msa/jaxws/PresetAlign.java
689 [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
690 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
691 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
692 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
693 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
694 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
695 [wsgen] Note: ap round: 2
696 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.MafftWS
697 [wsgen] Note: ap round: 1
698 [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
699 [wsgen] [should process method: align hasWebMethods: false ]
700 [wsgen] [endpointReferencesInterface: true]
701 [wsgen] [declaring class has WebSevice: true]
702 [wsgen] [returning: true]
703 [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
704 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
705 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
706 [wsgen] [should process method: customAlign hasWebMethods: false ]
707 [wsgen] [endpointReferencesInterface: true]
708 [wsgen] [declaring class has WebSevice: true]
709 [wsgen] [returning: true]
710 [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
711 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
712 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
713 [wsgen] [should process method: presetAlign hasWebMethods: false ]
714 [wsgen] [endpointReferencesInterface: true]
715 [wsgen] [declaring class has WebSevice: true]
716 [wsgen] [returning: true]
717 [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
718 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
719 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
720 [wsgen] [should process method: getResult hasWebMethods: false ]
721 [wsgen] [endpointReferencesInterface: true]
722 [wsgen] [declaring class has WebSevice: true]
723 [wsgen] [returning: true]
724 [wsgen] [WrapperGen - method: getResult(java.lang.String)]
725 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
726 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
727 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
728 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
729 [wsgen] [should process method: cancelJob hasWebMethods: false ]
730 [wsgen] [endpointReferencesInterface: true]
731 [wsgen] [declaring class has WebSevice: false]
732 [wsgen] [returning: true]
733 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
734 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
735 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
736 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
737 [wsgen] [endpointReferencesInterface: true]
738 [wsgen] [declaring class has WebSevice: false]
739 [wsgen] [returning: true]
740 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
741 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
742 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
743 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
744 [wsgen] [endpointReferencesInterface: true]
745 [wsgen] [declaring class has WebSevice: false]
746 [wsgen] [returning: true]
747 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
748 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
749 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
750 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
751 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
752 [wsgen] [endpointReferencesInterface: true]
753 [wsgen] [declaring class has WebSevice: false]
754 [wsgen] [returning: true]
755 [wsgen] [WrapperGen - method: getRunnerOptions()]
756 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
757 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
758 [wsgen] [should process method: getPresets hasWebMethods: false ]
759 [wsgen] [endpointReferencesInterface: true]
760 [wsgen] [declaring class has WebSevice: false]
761 [wsgen] [returning: true]
762 [wsgen] [WrapperGen - method: getPresets()]
763 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
764 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
765 [wsgen] [should process method: getLimit hasWebMethods: false ]
766 [wsgen] [endpointReferencesInterface: true]
767 [wsgen] [declaring class has WebSevice: false]
768 [wsgen] [returning: true]
769 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
770 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
771 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
772 [wsgen] [should process method: getLimits hasWebMethods: false ]
773 [wsgen] [endpointReferencesInterface: true]
774 [wsgen] [declaring class has WebSevice: false]
775 [wsgen] [returning: true]
776 [wsgen] [WrapperGen - method: getLimits()]
777 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
778 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
779 [wsgen] compbio/data/msa/jaxws/Align.java
780 [wsgen] compbio/data/msa/jaxws/AlignResponse.java
781 [wsgen] compbio/data/msa/jaxws/CancelJob.java
782 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
783 [wsgen] compbio/data/msa/jaxws/CustomAlign.java
784 [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
785 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
786 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
787 [wsgen] compbio/data/msa/jaxws/GetLimit.java
788 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
789 [wsgen] compbio/data/msa/jaxws/GetLimits.java
790 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
791 [wsgen] compbio/data/msa/jaxws/GetPresets.java
792 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
793 [wsgen] compbio/data/msa/jaxws/GetResult.java
794 [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
795 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
796 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
797 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
798 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
799 [wsgen] compbio/data/msa/jaxws/PresetAlign.java
800 [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
801 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
802 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
803 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
804 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
805 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
806 [wsgen] Note: ap round: 2
807 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.TcoffeeWS
808 [wsgen] Note: ap round: 1
809 [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
810 [wsgen] [should process method: align hasWebMethods: false ]
811 [wsgen] [endpointReferencesInterface: true]
812 [wsgen] [declaring class has WebSevice: true]
813 [wsgen] [returning: true]
814 [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
815 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
816 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
817 [wsgen] [should process method: customAlign hasWebMethods: false ]
818 [wsgen] [endpointReferencesInterface: true]
819 [wsgen] [declaring class has WebSevice: true]
820 [wsgen] [returning: true]
821 [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
822 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
823 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
824 [wsgen] [should process method: presetAlign hasWebMethods: false ]
825 [wsgen] [endpointReferencesInterface: true]
826 [wsgen] [declaring class has WebSevice: true]
827 [wsgen] [returning: true]
828 [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
829 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
830 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
831 [wsgen] [should process method: getResult hasWebMethods: false ]
832 [wsgen] [endpointReferencesInterface: true]
833 [wsgen] [declaring class has WebSevice: true]
834 [wsgen] [returning: true]
835 [wsgen] [WrapperGen - method: getResult(java.lang.String)]
836 [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
837 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
838 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
839 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
840 [wsgen] [should process method: cancelJob hasWebMethods: false ]
841 [wsgen] [endpointReferencesInterface: true]
842 [wsgen] [declaring class has WebSevice: false]
843 [wsgen] [returning: true]
844 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
845 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
846 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
847 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
848 [wsgen] [endpointReferencesInterface: true]
849 [wsgen] [declaring class has WebSevice: false]
850 [wsgen] [returning: true]
851 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
852 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
853 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
854 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
855 [wsgen] [endpointReferencesInterface: true]
856 [wsgen] [declaring class has WebSevice: false]
857 [wsgen] [returning: true]
858 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
859 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
860 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
861 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
862 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
863 [wsgen] [endpointReferencesInterface: true]
864 [wsgen] [declaring class has WebSevice: false]
865 [wsgen] [returning: true]
866 [wsgen] [WrapperGen - method: getRunnerOptions()]
867 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
868 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
869 [wsgen] [should process method: getPresets hasWebMethods: false ]
870 [wsgen] [endpointReferencesInterface: true]
871 [wsgen] [declaring class has WebSevice: false]
872 [wsgen] [returning: true]
873 [wsgen] [WrapperGen - method: getPresets()]
874 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
875 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
876 [wsgen] [should process method: getLimit hasWebMethods: false ]
877 [wsgen] [endpointReferencesInterface: true]
878 [wsgen] [declaring class has WebSevice: false]
879 [wsgen] [returning: true]
880 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
881 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
882 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
883 [wsgen] [should process method: getLimits hasWebMethods: false ]
884 [wsgen] [endpointReferencesInterface: true]
885 [wsgen] [declaring class has WebSevice: false]
886 [wsgen] [returning: true]
887 [wsgen] [WrapperGen - method: getLimits()]
888 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
889 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
890 [wsgen] compbio/data/msa/jaxws/Align.java
891 [wsgen] compbio/data/msa/jaxws/AlignResponse.java
892 [wsgen] compbio/data/msa/jaxws/CancelJob.java
893 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
894 [wsgen] compbio/data/msa/jaxws/CustomAlign.java
895 [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
896 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
897 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
898 [wsgen] compbio/data/msa/jaxws/GetLimit.java
899 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
900 [wsgen] compbio/data/msa/jaxws/GetLimits.java
901 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
902 [wsgen] compbio/data/msa/jaxws/GetPresets.java
903 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
904 [wsgen] compbio/data/msa/jaxws/GetResult.java
905 [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
906 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
907 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
908 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
909 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
910 [wsgen] compbio/data/msa/jaxws/PresetAlign.java
911 [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
912 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
913 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
914 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
915 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
916 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
917 [wsgen] Note: ap round: 2
918 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.DisemblWS
919 [wsgen] Note: ap round: 1
920 [wsgen] [ProcessedMethods Interface: compbio.data.msa.SequenceAnnotation<T>]
921 [wsgen] [should process method: analize hasWebMethods: false ]
922 [wsgen] [endpointReferencesInterface: true]
923 [wsgen] [declaring class has WebSevice: true]
924 [wsgen] [returning: true]
925 [wsgen] [WrapperGen - method: analize(java.util.List<compbio.data.sequence.FastaSequence>)]
926 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
927 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Analize]
928 [wsgen] [should process method: customAnalize hasWebMethods: false ]
929 [wsgen] [endpointReferencesInterface: true]
930 [wsgen] [declaring class has WebSevice: true]
931 [wsgen] [returning: true]
932 [wsgen] [WrapperGen - method: customAnalize(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
933 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
934 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAnalize]
935 [wsgen] [should process method: presetAnalize hasWebMethods: false ]
936 [wsgen] [endpointReferencesInterface: true]
937 [wsgen] [declaring class has WebSevice: true]
938 [wsgen] [returning: true]
939 [wsgen] [WrapperGen - method: presetAnalize(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
940 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
941 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAnalize]
942 [wsgen] [should process method: getAnnotation hasWebMethods: false ]
943 [wsgen] [endpointReferencesInterface: true]
944 [wsgen] [declaring class has WebSevice: true]
945 [wsgen] [returning: true]
946 [wsgen] [WrapperGen - method: getAnnotation(java.lang.String)]
947 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
948 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetAnnotation]
949 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
950 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
951 [wsgen] [should process method: cancelJob hasWebMethods: false ]
952 [wsgen] [endpointReferencesInterface: true]
953 [wsgen] [declaring class has WebSevice: false]
954 [wsgen] [returning: true]
955 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
956 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
957 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
958 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
959 [wsgen] [endpointReferencesInterface: true]
960 [wsgen] [declaring class has WebSevice: false]
961 [wsgen] [returning: true]
962 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
963 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
964 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
965 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
966 [wsgen] [endpointReferencesInterface: true]
967 [wsgen] [declaring class has WebSevice: false]
968 [wsgen] [returning: true]
969 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
970 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
971 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
972 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
973 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
974 [wsgen] [endpointReferencesInterface: true]
975 [wsgen] [declaring class has WebSevice: false]
976 [wsgen] [returning: true]
977 [wsgen] [WrapperGen - method: getRunnerOptions()]
978 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
979 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
980 [wsgen] [should process method: getPresets hasWebMethods: false ]
981 [wsgen] [endpointReferencesInterface: true]
982 [wsgen] [declaring class has WebSevice: false]
983 [wsgen] [returning: true]
984 [wsgen] [WrapperGen - method: getPresets()]
985 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
986 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
987 [wsgen] [should process method: getLimit hasWebMethods: false ]
988 [wsgen] [endpointReferencesInterface: true]
989 [wsgen] [declaring class has WebSevice: false]
990 [wsgen] [returning: true]
991 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
992 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
993 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
994 [wsgen] [should process method: getLimits hasWebMethods: false ]
995 [wsgen] [endpointReferencesInterface: true]
996 [wsgen] [declaring class has WebSevice: false]
997 [wsgen] [returning: true]
998 [wsgen] [WrapperGen - method: getLimits()]
999 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1000 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
1001 [wsgen] compbio/data/msa/jaxws/Analize.java
1002 [wsgen] compbio/data/msa/jaxws/AnalizeResponse.java
1003 [wsgen] compbio/data/msa/jaxws/CancelJob.java
1004 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
1005 [wsgen] compbio/data/msa/jaxws/CustomAnalize.java
1006 [wsgen] compbio/data/msa/jaxws/CustomAnalizeResponse.java
1007 [wsgen] compbio/data/msa/jaxws/GetAnnotation.java
1008 [wsgen] compbio/data/msa/jaxws/GetAnnotationResponse.java
1009 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
1010 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
1011 [wsgen] compbio/data/msa/jaxws/GetLimit.java
1012 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
1013 [wsgen] compbio/data/msa/jaxws/GetLimits.java
1014 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
1015 [wsgen] compbio/data/msa/jaxws/GetPresets.java
1016 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
1017 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
1018 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
1019 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
1020 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
1021 [wsgen] compbio/data/msa/jaxws/PresetAnalize.java
1022 [wsgen] compbio/data/msa/jaxws/PresetAnalizeResponse.java
1023 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
1024 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
1025 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
1026 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
1027 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
1028 [wsgen] Note: ap round: 2
1029 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.GlobPlotWS
1030 [wsgen] Note: ap round: 1
1031 [wsgen] [ProcessedMethods Interface: compbio.data.msa.SequenceAnnotation<T>]
1032 [wsgen] [should process method: analize hasWebMethods: false ]
1033 [wsgen] [endpointReferencesInterface: true]
1034 [wsgen] [declaring class has WebSevice: true]
1035 [wsgen] [returning: true]
1036 [wsgen] [WrapperGen - method: analize(java.util.List<compbio.data.sequence.FastaSequence>)]
1037 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1038 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Analize]
1039 [wsgen] [should process method: customAnalize hasWebMethods: false ]
1040 [wsgen] [endpointReferencesInterface: true]
1041 [wsgen] [declaring class has WebSevice: true]
1042 [wsgen] [returning: true]
1043 [wsgen] [WrapperGen - method: customAnalize(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
1044 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1045 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAnalize]
1046 [wsgen] [should process method: presetAnalize hasWebMethods: false ]
1047 [wsgen] [endpointReferencesInterface: true]
1048 [wsgen] [declaring class has WebSevice: true]
1049 [wsgen] [returning: true]
1050 [wsgen] [WrapperGen - method: presetAnalize(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
1051 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1052 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAnalize]
1053 [wsgen] [should process method: getAnnotation hasWebMethods: false ]
1054 [wsgen] [endpointReferencesInterface: true]
1055 [wsgen] [declaring class has WebSevice: true]
1056 [wsgen] [returning: true]
1057 [wsgen] [WrapperGen - method: getAnnotation(java.lang.String)]
1058 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1059 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetAnnotation]
1060 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
1061 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
1062 [wsgen] [should process method: cancelJob hasWebMethods: false ]
1063 [wsgen] [endpointReferencesInterface: true]
1064 [wsgen] [declaring class has WebSevice: false]
1065 [wsgen] [returning: true]
1066 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
1067 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1068 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
1069 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
1070 [wsgen] [endpointReferencesInterface: true]
1071 [wsgen] [declaring class has WebSevice: false]
1072 [wsgen] [returning: true]
1073 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
1074 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1075 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
1076 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
1077 [wsgen] [endpointReferencesInterface: true]
1078 [wsgen] [declaring class has WebSevice: false]
1079 [wsgen] [returning: true]
1080 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
1081 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1082 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
1083 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
1084 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
1085 [wsgen] [endpointReferencesInterface: true]
1086 [wsgen] [declaring class has WebSevice: false]
1087 [wsgen] [returning: true]
1088 [wsgen] [WrapperGen - method: getRunnerOptions()]
1089 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1090 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
1091 [wsgen] [should process method: getPresets hasWebMethods: false ]
1092 [wsgen] [endpointReferencesInterface: true]
1093 [wsgen] [declaring class has WebSevice: false]
1094 [wsgen] [returning: true]
1095 [wsgen] [WrapperGen - method: getPresets()]
1096 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1097 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
1098 [wsgen] [should process method: getLimit hasWebMethods: false ]
1099 [wsgen] [endpointReferencesInterface: true]
1100 [wsgen] [declaring class has WebSevice: false]
1101 [wsgen] [returning: true]
1102 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
1103 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1104 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
1105 [wsgen] [should process method: getLimits hasWebMethods: false ]
1106 [wsgen] [endpointReferencesInterface: true]
1107 [wsgen] [declaring class has WebSevice: false]
1108 [wsgen] [returning: true]
1109 [wsgen] [WrapperGen - method: getLimits()]
1110 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1111 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
1112 [wsgen] compbio/data/msa/jaxws/Analize.java
1113 [wsgen] compbio/data/msa/jaxws/AnalizeResponse.java
1114 [wsgen] compbio/data/msa/jaxws/CancelJob.java
1115 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
1116 [wsgen] compbio/data/msa/jaxws/CustomAnalize.java
1117 [wsgen] compbio/data/msa/jaxws/CustomAnalizeResponse.java
1118 [wsgen] compbio/data/msa/jaxws/GetAnnotation.java
1119 [wsgen] compbio/data/msa/jaxws/GetAnnotationResponse.java
1120 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
1121 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
1122 [wsgen] compbio/data/msa/jaxws/GetLimit.java
1123 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
1124 [wsgen] compbio/data/msa/jaxws/GetLimits.java
1125 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
1126 [wsgen] compbio/data/msa/jaxws/GetPresets.java
1127 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
1128 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
1129 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
1130 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
1131 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
1132 [wsgen] compbio/data/msa/jaxws/PresetAnalize.java
1133 [wsgen] compbio/data/msa/jaxws/PresetAnalizeResponse.java
1134 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
1135 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
1136 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
1137 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
1138 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
1139 [wsgen] Note: ap round: 2
1140 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.JronnWS
1141 [wsgen] Note: ap round: 1
1142 [wsgen] [ProcessedMethods Interface: compbio.data.msa.SequenceAnnotation<T>]
1143 [wsgen] [should process method: analize hasWebMethods: false ]
1144 [wsgen] [endpointReferencesInterface: true]
1145 [wsgen] [declaring class has WebSevice: true]
1146 [wsgen] [returning: true]
1147 [wsgen] [WrapperGen - method: analize(java.util.List<compbio.data.sequence.FastaSequence>)]
1148 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1149 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Analize]
1150 [wsgen] [should process method: customAnalize hasWebMethods: false ]
1151 [wsgen] [endpointReferencesInterface: true]
1152 [wsgen] [declaring class has WebSevice: true]
1153 [wsgen] [returning: true]
1154 [wsgen] [WrapperGen - method: customAnalize(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
1155 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1156 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAnalize]
1157 [wsgen] [should process method: presetAnalize hasWebMethods: false ]
1158 [wsgen] [endpointReferencesInterface: true]
1159 [wsgen] [declaring class has WebSevice: true]
1160 [wsgen] [returning: true]
1161 [wsgen] [WrapperGen - method: presetAnalize(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
1162 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1163 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAnalize]
1164 [wsgen] [should process method: getAnnotation hasWebMethods: false ]
1165 [wsgen] [endpointReferencesInterface: true]
1166 [wsgen] [declaring class has WebSevice: true]
1167 [wsgen] [returning: true]
1168 [wsgen] [WrapperGen - method: getAnnotation(java.lang.String)]
1169 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1170 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetAnnotation]
1171 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
1172 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
1173 [wsgen] [should process method: cancelJob hasWebMethods: false ]
1174 [wsgen] [endpointReferencesInterface: true]
1175 [wsgen] [declaring class has WebSevice: false]
1176 [wsgen] [returning: true]
1177 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
1178 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1179 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
1180 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
1181 [wsgen] [endpointReferencesInterface: true]
1182 [wsgen] [declaring class has WebSevice: false]
1183 [wsgen] [returning: true]
1184 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
1185 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1186 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
1187 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
1188 [wsgen] [endpointReferencesInterface: true]
1189 [wsgen] [declaring class has WebSevice: false]
1190 [wsgen] [returning: true]
1191 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
1192 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1193 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
1194 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
1195 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
1196 [wsgen] [endpointReferencesInterface: true]
1197 [wsgen] [declaring class has WebSevice: false]
1198 [wsgen] [returning: true]
1199 [wsgen] [WrapperGen - method: getRunnerOptions()]
1200 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1201 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
1202 [wsgen] [should process method: getPresets hasWebMethods: false ]
1203 [wsgen] [endpointReferencesInterface: true]
1204 [wsgen] [declaring class has WebSevice: false]
1205 [wsgen] [returning: true]
1206 [wsgen] [WrapperGen - method: getPresets()]
1207 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1208 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
1209 [wsgen] [should process method: getLimit hasWebMethods: false ]
1210 [wsgen] [endpointReferencesInterface: true]
1211 [wsgen] [declaring class has WebSevice: false]
1212 [wsgen] [returning: true]
1213 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
1214 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1215 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
1216 [wsgen] [should process method: getLimits hasWebMethods: false ]
1217 [wsgen] [endpointReferencesInterface: true]
1218 [wsgen] [declaring class has WebSevice: false]
1219 [wsgen] [returning: true]
1220 [wsgen] [WrapperGen - method: getLimits()]
1221 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1222 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
1223 [wsgen] compbio/data/msa/jaxws/Analize.java
1224 [wsgen] compbio/data/msa/jaxws/AnalizeResponse.java
1225 [wsgen] compbio/data/msa/jaxws/CancelJob.java
1226 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
1227 [wsgen] compbio/data/msa/jaxws/CustomAnalize.java
1228 [wsgen] compbio/data/msa/jaxws/CustomAnalizeResponse.java
1229 [wsgen] compbio/data/msa/jaxws/GetAnnotation.java
1230 [wsgen] compbio/data/msa/jaxws/GetAnnotationResponse.java
1231 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
1232 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
1233 [wsgen] compbio/data/msa/jaxws/GetLimit.java
1234 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
1235 [wsgen] compbio/data/msa/jaxws/GetLimits.java
1236 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
1237 [wsgen] compbio/data/msa/jaxws/GetPresets.java
1238 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
1239 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
1240 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
1241 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
1242 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
1243 [wsgen] compbio/data/msa/jaxws/PresetAnalize.java
1244 [wsgen] compbio/data/msa/jaxws/PresetAnalizeResponse.java
1245 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
1246 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
1247 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
1248 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
1249 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
1250 [wsgen] Note: ap round: 2
1251 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.IUPredWS
1252 [wsgen] Note: ap round: 1
1253 [wsgen] [ProcessedMethods Interface: compbio.data.msa.SequenceAnnotation<T>]
1254 [wsgen] [should process method: analize hasWebMethods: false ]
1255 [wsgen] [endpointReferencesInterface: true]
1256 [wsgen] [declaring class has WebSevice: true]
1257 [wsgen] [returning: true]
1258 [wsgen] [WrapperGen - method: analize(java.util.List<compbio.data.sequence.FastaSequence>)]
1259 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1260 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Analize]
1261 [wsgen] [should process method: customAnalize hasWebMethods: false ]
1262 [wsgen] [endpointReferencesInterface: true]
1263 [wsgen] [declaring class has WebSevice: true]
1264 [wsgen] [returning: true]
1265 [wsgen] [WrapperGen - method: customAnalize(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
1266 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1267 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAnalize]
1268 [wsgen] [should process method: presetAnalize hasWebMethods: false ]
1269 [wsgen] [endpointReferencesInterface: true]
1270 [wsgen] [declaring class has WebSevice: true]
1271 [wsgen] [returning: true]
1272 [wsgen] [WrapperGen - method: presetAnalize(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
1273 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1274 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAnalize]
1275 [wsgen] [should process method: getAnnotation hasWebMethods: false ]
1276 [wsgen] [endpointReferencesInterface: true]
1277 [wsgen] [declaring class has WebSevice: true]
1278 [wsgen] [returning: true]
1279 [wsgen] [WrapperGen - method: getAnnotation(java.lang.String)]
1280 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1281 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetAnnotation]
1282 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
1283 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
1284 [wsgen] [should process method: cancelJob hasWebMethods: false ]
1285 [wsgen] [endpointReferencesInterface: true]
1286 [wsgen] [declaring class has WebSevice: false]
1287 [wsgen] [returning: true]
1288 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
1289 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1290 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
1291 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
1292 [wsgen] [endpointReferencesInterface: true]
1293 [wsgen] [declaring class has WebSevice: false]
1294 [wsgen] [returning: true]
1295 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
1296 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1297 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
1298 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
1299 [wsgen] [endpointReferencesInterface: true]
1300 [wsgen] [declaring class has WebSevice: false]
1301 [wsgen] [returning: true]
1302 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
1303 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1304 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
1305 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
1306 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
1307 [wsgen] [endpointReferencesInterface: true]
1308 [wsgen] [declaring class has WebSevice: false]
1309 [wsgen] [returning: true]
1310 [wsgen] [WrapperGen - method: getRunnerOptions()]
1311 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1312 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
1313 [wsgen] [should process method: getPresets hasWebMethods: false ]
1314 [wsgen] [endpointReferencesInterface: true]
1315 [wsgen] [declaring class has WebSevice: false]
1316 [wsgen] [returning: true]
1317 [wsgen] [WrapperGen - method: getPresets()]
1318 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1319 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
1320 [wsgen] [should process method: getLimit hasWebMethods: false ]
1321 [wsgen] [endpointReferencesInterface: true]
1322 [wsgen] [declaring class has WebSevice: false]
1323 [wsgen] [returning: true]
1324 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
1325 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1326 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
1327 [wsgen] [should process method: getLimits hasWebMethods: false ]
1328 [wsgen] [endpointReferencesInterface: true]
1329 [wsgen] [declaring class has WebSevice: false]
1330 [wsgen] [returning: true]
1331 [wsgen] [WrapperGen - method: getLimits()]
1332 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1333 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
1334 [wsgen] compbio/data/msa/jaxws/Analize.java
1335 [wsgen] compbio/data/msa/jaxws/AnalizeResponse.java
1336 [wsgen] compbio/data/msa/jaxws/CancelJob.java
1337 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
1338 [wsgen] compbio/data/msa/jaxws/CustomAnalize.java
1339 [wsgen] compbio/data/msa/jaxws/CustomAnalizeResponse.java
1340 [wsgen] compbio/data/msa/jaxws/GetAnnotation.java
1341 [wsgen] compbio/data/msa/jaxws/GetAnnotationResponse.java
1342 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
1343 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
1344 [wsgen] compbio/data/msa/jaxws/GetLimit.java
1345 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
1346 [wsgen] compbio/data/msa/jaxws/GetLimits.java
1347 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
1348 [wsgen] compbio/data/msa/jaxws/GetPresets.java
1349 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
1350 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
1351 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
1352 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
1353 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
1354 [wsgen] compbio/data/msa/jaxws/PresetAnalize.java
1355 [wsgen] compbio/data/msa/jaxws/PresetAnalizeResponse.java
1356 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
1357 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
1358 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
1359 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
1360 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
1361 [wsgen] Note: ap round: 2
1362 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.RegistryWS
1363 [wsgen] Note: ap round: 1
1364 [wsgen] [ProcessedMethods Interface: compbio.data.msa.RegistryWS]
1365 [wsgen] [should process method: getSupportedServices hasWebMethods: false ]
1366 [wsgen] [endpointReferencesInterface: true]
1367 [wsgen] [declaring class has WebSevice: true]
1368 [wsgen] [returning: true]
1369 [wsgen] [WrapperGen - method: getSupportedServices()]
1370 [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1371 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetSupportedServices]
1372 [wsgen] [should process method: getLastTested hasWebMethods: false ]
1373 [wsgen] [endpointReferencesInterface: true]
1374 [wsgen] [declaring class has WebSevice: true]
1375 [wsgen] [returning: true]
1376 [wsgen] [WrapperGen - method: getLastTested(compbio.ws.client.Services)]
1377 [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1378 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLastTested]
1379 [wsgen] [should process method: getLastTestedOn hasWebMethods: false ]
1380 [wsgen] [endpointReferencesInterface: true]
1381 [wsgen] [declaring class has WebSevice: true]
1382 [wsgen] [returning: true]
1383 [wsgen] [WrapperGen - method: getLastTestedOn(compbio.ws.client.Services)]
1384 [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1385 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLastTestedOn]
1386 [wsgen] [should process method: testAllServices hasWebMethods: false ]
1387 [wsgen] [endpointReferencesInterface: true]
1388 [wsgen] [declaring class has WebSevice: true]
1389 [wsgen] [returning: true]
1390 [wsgen] [WrapperGen - method: testAllServices()]
1391 [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1392 [wsgen] [requestWrapper: compbio.data.msa.jaxws.TestAllServices]
1393 [wsgen] [should process method: testService hasWebMethods: false ]
1394 [wsgen] [endpointReferencesInterface: true]
1395 [wsgen] [declaring class has WebSevice: true]
1396 [wsgen] [returning: true]
1397 [wsgen] [WrapperGen - method: testService(compbio.ws.client.Services)]
1398 [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1399 [wsgen] [requestWrapper: compbio.data.msa.jaxws.TestService]
1400 [wsgen] [should process method: isOperating hasWebMethods: false ]
1401 [wsgen] [endpointReferencesInterface: true]
1402 [wsgen] [declaring class has WebSevice: true]
1403 [wsgen] [returning: true]
1404 [wsgen] [WrapperGen - method: isOperating(compbio.ws.client.Services)]
1405 [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1406 [wsgen] [requestWrapper: compbio.data.msa.jaxws.IsOperating]
1407 [wsgen] [should process method: getServiceDescription hasWebMethods: false ]
1408 [wsgen] [endpointReferencesInterface: true]
1409 [wsgen] [declaring class has WebSevice: true]
1410 [wsgen] [returning: true]
1411 [wsgen] [WrapperGen - method: getServiceDescription(compbio.ws.client.Services)]
1412 [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1413 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetServiceDescription]
1414 [wsgen] [should process method: getServiceCategories hasWebMethods: false ]
1415 [wsgen] [endpointReferencesInterface: true]
1416 [wsgen] [declaring class has WebSevice: true]
1417 [wsgen] [returning: true]
1418 [wsgen] [WrapperGen - method: getServiceCategories()]
1419 [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
1420 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetServiceCategories]
1421 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
1422 [wsgen] compbio/data/msa/jaxws/GetLastTested.java
1423 [wsgen] compbio/data/msa/jaxws/GetLastTestedOn.java
1424 [wsgen] compbio/data/msa/jaxws/GetLastTestedOnResponse.java
1425 [wsgen] compbio/data/msa/jaxws/GetLastTestedResponse.java
1426 [wsgen] compbio/data/msa/jaxws/GetServiceCategories.java
1427 [wsgen] compbio/data/msa/jaxws/GetServiceCategoriesResponse.java
1428 [wsgen] compbio/data/msa/jaxws/GetServiceDescription.java
1429 [wsgen] compbio/data/msa/jaxws/GetServiceDescriptionResponse.java
1430 [wsgen] compbio/data/msa/jaxws/GetSupportedServices.java
1431 [wsgen] compbio/data/msa/jaxws/GetSupportedServicesResponse.java
1432 [wsgen] compbio/data/msa/jaxws/IsOperating.java
1433 [wsgen] compbio/data/msa/jaxws/IsOperatingResponse.java
1434 [wsgen] compbio/data/msa/jaxws/TestAllServices.java
1435 [wsgen] compbio/data/msa/jaxws/TestAllServicesResponse.java
1436 [wsgen] compbio/data/msa/jaxws/TestService.java
1437 [wsgen] compbio/data/msa/jaxws/TestServiceResponse.java
1438 [wsgen] Note: ap round: 2
1439 [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.RNAalifoldWS
1440 [wsgen] Note: ap round: 1
1441 [wsgen] [ProcessedMethods Interface: compbio.data.msa.SequenceAnnotation<T>]
1442 [wsgen] [should process method: analize hasWebMethods: false ]
1443 [wsgen] [endpointReferencesInterface: true]
1444 [wsgen] [declaring class has WebSevice: true]
1445 [wsgen] [returning: true]
1446 [wsgen] [WrapperGen - method: analize(java.util.List<compbio.data.sequence.FastaSequence>)]
1447 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1448 [wsgen] [requestWrapper: compbio.data.msa.jaxws.Analize]
1449 [wsgen] [should process method: customAnalize hasWebMethods: false ]
1450 [wsgen] [endpointReferencesInterface: true]
1451 [wsgen] [declaring class has WebSevice: true]
1452 [wsgen] [returning: true]
1453 [wsgen] [WrapperGen - method: customAnalize(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
1454 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1455 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAnalize]
1456 [wsgen] [should process method: presetAnalize hasWebMethods: false ]
1457 [wsgen] [endpointReferencesInterface: true]
1458 [wsgen] [declaring class has WebSevice: true]
1459 [wsgen] [returning: true]
1460 [wsgen] [WrapperGen - method: presetAnalize(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
1461 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1462 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAnalize]
1463 [wsgen] [should process method: getAnnotation hasWebMethods: false ]
1464 [wsgen] [endpointReferencesInterface: true]
1465 [wsgen] [declaring class has WebSevice: true]
1466 [wsgen] [returning: true]
1467 [wsgen] [WrapperGen - method: getAnnotation(java.lang.String)]
1468 [wsgen] [method.getDeclaringType(): compbio.data.msa.SequenceAnnotation<T>]
1469 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetAnnotation]
1470 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
1471 [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
1472 [wsgen] [should process method: cancelJob hasWebMethods: false ]
1473 [wsgen] [endpointReferencesInterface: true]
1474 [wsgen] [declaring class has WebSevice: false]
1475 [wsgen] [returning: true]
1476 [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
1477 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1478 [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
1479 [wsgen] [should process method: getJobStatus hasWebMethods: false ]
1480 [wsgen] [endpointReferencesInterface: true]
1481 [wsgen] [declaring class has WebSevice: false]
1482 [wsgen] [returning: true]
1483 [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
1484 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1485 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
1486 [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
1487 [wsgen] [endpointReferencesInterface: true]
1488 [wsgen] [declaring class has WebSevice: false]
1489 [wsgen] [returning: true]
1490 [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
1491 [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
1492 [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
1493 [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
1494 [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
1495 [wsgen] [endpointReferencesInterface: true]
1496 [wsgen] [declaring class has WebSevice: false]
1497 [wsgen] [returning: true]
1498 [wsgen] [WrapperGen - method: getRunnerOptions()]
1499 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1500 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
1501 [wsgen] [should process method: getPresets hasWebMethods: false ]
1502 [wsgen] [endpointReferencesInterface: true]
1503 [wsgen] [declaring class has WebSevice: false]
1504 [wsgen] [returning: true]
1505 [wsgen] [WrapperGen - method: getPresets()]
1506 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1507 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
1508 [wsgen] [should process method: getLimit hasWebMethods: false ]
1509 [wsgen] [endpointReferencesInterface: true]
1510 [wsgen] [declaring class has WebSevice: false]
1511 [wsgen] [returning: true]
1512 [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
1513 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1514 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
1515 [wsgen] [should process method: getLimits hasWebMethods: false ]
1516 [wsgen] [endpointReferencesInterface: true]
1517 [wsgen] [declaring class has WebSevice: false]
1518 [wsgen] [returning: true]
1519 [wsgen] [WrapperGen - method: getLimits()]
1520 [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
1521 [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
1522 [wsgen] compbio/data/msa/jaxws/Analize.java
1523 [wsgen] compbio/data/msa/jaxws/AnalizeResponse.java
1524 [wsgen] compbio/data/msa/jaxws/CancelJob.java
1525 [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
1526 [wsgen] compbio/data/msa/jaxws/CustomAnalize.java
1527 [wsgen] compbio/data/msa/jaxws/CustomAnalizeResponse.java
1528 [wsgen] compbio/data/msa/jaxws/GetAnnotation.java
1529 [wsgen] compbio/data/msa/jaxws/GetAnnotationResponse.java
1530 [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
1531 [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
1532 [wsgen] compbio/data/msa/jaxws/GetLimit.java
1533 [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
1534 [wsgen] compbio/data/msa/jaxws/GetLimits.java
1535 [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
1536 [wsgen] compbio/data/msa/jaxws/GetPresets.java
1537 [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
1538 [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
1539 [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
1540 [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
1541 [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
1542 [wsgen] compbio/data/msa/jaxws/PresetAnalize.java
1543 [wsgen] compbio/data/msa/jaxws/PresetAnalizeResponse.java
1544 [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
1545 [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
1546 [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
1547 [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
1548 [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
1549 [wsgen] Note: ap round: 2
1552 Total time: 9 seconds