1 <?xml version="1.0" encoding="UTF-8"?>
\r
3 <project default="build-server" name="compbio-ws" basedir=".">
\r
6 <property name="classes" location="${basedir}/WEB-INF/classes" />
\r
7 <property name="lib.path" location="${basedir}/WEB-INF/lib" />
\r
9 <path id="classes.path">
\r
10 <pathelement location="${classes}" />
\r
13 <!-- add libraries -->
\r
14 <path id="project.classpath">
\r
15 <fileset dir="${lib.path}">
\r
16 <include name="*.jar" />
\r
20 <property name="wsdl.dir" location="${basedir}/webservices/compbio/ws/server/resource" />
\r
21 <property name="clustal.wsdl" location="${wsdl.dir}/ClustalWS.wsdl" />
\r
22 <property name="muscle.wsdl" location="${wsdl.dir}/MuscleWS.wsdl" />
\r
23 <property name="tcoffee.wsdl" location="${wsdl.dir}/TcoffeeWS.wsdl" />
\r
24 <property name="mafft.wsdl" location="${wsdl.dir}/MafftWS.wsdl" />
\r
25 <property name="aacon.wsdl" location="${wsdl.dir}/AAConWS.wsdl" />
\r
27 <taskdef name="wsgen" classname="com.sun.tools.ws.ant.WsGen">
\r
28 <classpath refid="project.classpath" />
\r
31 <target name="build-server">
\r
32 <!-- TODO this runs file from Eclipse, but with Ant only this need to depends on clean and build! -->
\r
33 <property name="server.artifacts.dir" location="${basedir}/webservices/compbio/ws/server/jaxws/" />
\r
35 <mkdir dir="${server.artifacts.dir}" />
\r
36 <mkdir dir="${wsdl.dir}" />
\r
37 <delete quiet="false" verbose="true" failonerror="false">
\r
38 <fileset dir="${server.artifacts.dir}">
\r
39 <include name="*.java" />
\r
41 <fileset dir="${wsdl.dir}">
\r
44 <!-- destdir - Where to put generated classes -->
\r
45 <!-- sourcedestdir - Where to put generated source files -->
\r
46 <!-- resourcedestdir - Where to put generated source files -->
\r
47 <wsgen sei="compbio.ws.server.AAConWS"
\r
48 sourcedestdir="${basedir}/webservices"
\r
49 destdir="${classes}"
\r
50 resourcedestdir="${wsdl.dir}"
\r
51 keep="true" genwsdl="true"
\r
55 <classpath refid="classes.path" />
\r
56 <classpath refid="project.classpath" />
\r
58 <wsgen sei="compbio.ws.server.ClustalWS"
\r
59 sourcedestdir="${basedir}/webservices"
\r
60 destdir="${classes}"
\r
61 resourcedestdir="${wsdl.dir}"
\r
62 keep="true" genwsdl="true"
\r
66 <classpath refid="classes.path" />
\r
67 <classpath refid="project.classpath" />
\r
69 <wsgen sei="compbio.ws.server.MuscleWS"
\r
70 sourcedestdir="${basedir}/webservices"
\r
71 destdir="${classes}"
\r
72 resourcedestdir="${wsdl.dir}"
\r
73 keep="true" genwsdl="true"
\r
77 <classpath refid="classes.path" />
\r
78 <classpath refid="project.classpath" />
\r
80 <wsgen sei="compbio.ws.server.MafftWS"
\r
81 sourcedestdir="${basedir}/webservices"
\r
82 destdir="${classes}"
\r
83 resourcedestdir="${wsdl.dir}"
\r
84 keep="true" genwsdl="true"
\r
88 <classpath refid="classes.path" />
\r
89 <classpath refid="project.classpath" />
\r
91 <wsgen sei="compbio.ws.server.TcoffeeWS"
\r
92 sourcedestdir="${basedir}/webservices"
\r
93 destdir="${classes}"
\r
94 resourcedestdir="${wsdl.dir}"
\r
95 keep="true" genwsdl="true"
\r
99 <classpath refid="classes.path" />
\r
100 <classpath refid="project.classpath" />
\r
106 <taskdef name="wsimport" classname="com.sun.tools.ws.ant.WsImport">
\r
107 <classpath refid="project.classpath" />
\r
110 <target name="build-clients">
\r
111 <property name="client.artifacts.dir" location="${basedir}/webservices/compbio/ws/client/stub" />
\r
113 <mkdir dir="${client.artifacts.dir}" />
\r
114 <delete quiet="false" verbose="true" failonerror="true">
\r
115 <fileset dir="${client.artifacts.dir}">
\r
116 <include name="*.java" />
\r
119 <wsimport wsdl="${clustal.wsdl}"
\r
120 sourcedestdir="${basedir}/webservices/"
\r
121 keep="true" extension="false"
\r
122 verbose="true" xnocompile="true"
\r
123 package="compbio.ws.client.stub"
\r
126 <wsimport wsdl="${muscle.wsdl}"
\r
127 sourcedestdir="${basedir}/webservices/"
\r
128 keep="true" extension="false"
\r
129 verbose="true" xnocompile="true"
\r
130 package="compbio.ws.client.stub"
\r
133 <wsimport wsdl="${mafft.wsdl}"
\r
134 sourcedestdir="${basedir}/webservices/"
\r
135 keep="true" extension="false"
\r
136 verbose="true" xnocompile="true"
\r
137 package="compbio.ws.client.stub"
\r
140 <wsimport wsdl="${tcoffee.wsdl}"
\r
141 sourcedestdir="${basedir}/webservices/"
\r
142 keep="true" extension="false"
\r
143 verbose="true" xnocompile="true"
\r
144 package="compbio.ws.client.stub"
\r
147 <!-- <xjcarg value="-cp" />
\r
148 <xjcarg pathref="project.classpath" />
\r
149 <xjcarg value="-Xcommons-lang" /> -->
\r
156 <target name="Build artifacts from schema" description="Test task to generate JaxB commons annotated data classes DOES NOT REALLY WORK">
\r
157 <taskdef name="xjc" classname="com.sun.tools.xjc.XJCTask">
\r
158 <classpath refid="project.classpath" />
\r
160 <mkdir dir="${basedir}/src/test" />
\r
161 <xjc schema="${wsdl.dir}/SyncMsaWS_schema1.xsd" destdir="${basedir}/src/test">
\r
162 <arg value="-Xcommons-lang" />
\r
164 <produces dir="${basedir}/src/test" />
\r
165 <classpath refid="classes.path" />
\r
167 <fileset dir="${basedir}/lib">
\r
168 //JAXB2 Basics library
\r
169 <include name="jaxb2-basics-*.jar"/>
\r
170 // JAXB2 Basics library dependencies
\r
171 <include name="jaxb2-basics-runtime-*.jar"/>
\r
172 <include name="jaxb2-basics-tools-*.jar"/>
\r
173 <include name="commons-beanutils-*.jar"/>
\r
174 <include name="commons-lang-*.jar"/>
\r
175 <include name="commons-logging-*.jar"/>
\r
189 <target name="build-Clustal-client-from-live-server">
\r
191 <wsimport wsdl="http://localhost:7979/ClustalWS?wsdl"
\r
192 sourcedestdir="${basedir}/webservices/"
\r
197 package="compbio.ws.client.stub"
\r
202 <target name="build-Muscle-client-from-live-server">
\r
203 <wsimport wsdl="http://localhost:7979/MuscleWS?wsdl"
\r
204 sourcedestdir="${basedir}/webservices/"
\r
209 package="compbio.ws.client.stub"
\r
215 <target name="build-client-jar" description="Pack WS client into a single jar THIS IS EXAMPLE ONLY!">
\r
216 <echo>Jar file: wsclient</echo>
\r
217 <delete file="${basedir}/resources/wsclient.jar">
\r
219 <jar jarfile="${basedir}/resources/wsclient.jar">
\r
220 <fileset dir="${basedir}/WebContent/WEB-INF/classes/" includes="org/pimslims/ws/client/**/*.class" />
\r
221 <fileset dir="${classes}" includes="org/pimslims/sec/*,org/pimslims/lab/Util.class" />
\r
222 <zipfileset excludes="META-INF/*.SF" src="D:/workspace/current-pims-web/WebContent/WEB-INF/lib/webservices-rt.jar" />
\r
224 <attribute name="Built-By" value="${user.name}" />
\r
225 <attribute name="Main-Class" value="org.pimslims.ws.client.FileUploadClient" />
\r
226 <attribute name="Class-Path" value="." />
\r
227 <attribute name="Implementation-Title" value="PIMS File Upload Web Service Client" />
\r
228 <attribute name="Implementation-Vendor" value="The PIMS team" />
\r
229 <attribute name="Implementation-URL" value="http://www.pims-lims.org" />
\r
235 <target name="run-client-jar" description="THIS IS EXAMPLE ONLY">
\r
236 <java jar="${basedir}/resources/wsclient.jar" fork="true" failonerror="true" maxmemory="256m">
\r
237 <arg value="C:/Documents and Settings/pvt43/Desktop/Leeds Sequencing/Copy of Files to up load" />
\r
241 <target name="run-client-class" description="THIS IS EXAMPLE ONLY">
\r
242 <java classname="org.pimslims.ws.client.FileUploadClient" fork="true" failonerror="true" maxmemory="256m">
\r
243 <classpath refid="project.classpath" />
\r
244 <classpath refid="instrument.classpath" />
\r