wsbuild.xml

   1 <?xml version="1.0" encoding="UTF-8"?>\r
   2 \r
   3 <project default="build-server" name="compbio-ws" basedir=".">\r
   4 \r
   5         <!-- java -->\r
   6         <property name="classes" location="${basedir}/WEB-INF/classes" />\r
   7         <property name="lib.path" location="${basedir}/WEB-INF/lib" />\r
   8 \r
   9         <path id="classes.path">\r
  10                 <pathelement location="${classes}" />\r
  11         </path>\r
  12 \r
  13         <!-- add libraries -->\r
  14         <path id="project.classpath">\r
  15                 <fileset dir="${lib.path}">\r
  16                         <include name="*.jar" />\r
  17                 </fileset>\r
  18         </path>\r
  19 \r
  20         <property name="wsdl.dir" location="${basedir}/webservices/compbio/ws/server/resource" />\r
  21         <property name="clustal.wsdl" location="${wsdl.dir}/ClustalWS.wsdl" />\r
  22         <property name="muscle.wsdl" location="${wsdl.dir}/MuscleWS.wsdl" />\r
  23         <property name="tcoffee.wsdl" location="${wsdl.dir}/TcoffeeWS.wsdl" />\r
  24         <property name="mafft.wsdl" location="${wsdl.dir}/MafftWS.wsdl" />\r
  25         <property name="aacon.wsdl" location="${wsdl.dir}/AAConWS.wsdl" />\r
  26         <property name="disembl.wsdl" location="${wsdl.dir}/DisemblWS.wsdl" />\r
  27         <property name="globplot.wsdl" location="${wsdl.dir}/GlobPlotWS.wsdl" />\r
  28         <property name="iupred.wsdl" location="${wsdl.dir}/IUPredWS.wsdl" />\r
  29         <property name="jronn.wsdl" location="${wsdl.dir}/JronnWS.wsdl" />\r
  30         <property name="registry.wsdl" location="${wsdl.dir}/RegistryWS.wsdl" />\r
  31         \r
  32 \r
  33         <taskdef name="wsgen" onerror="report" classname="com.sun.tools.ws.ant.WsGen">\r
  34                 <classpath refid="project.classpath" />\r
  35         </taskdef>\r
  36 \r
  37         <target name="build-server">\r
  38                 <!-- TODO this runs file from Eclipse, but with Ant only this need to depends on clean and build! -->\r
  39                         <property name="server.artifacts.dir" location="${basedir}/webservices/compbio/ws/server/jaxws/" />\r
  40 \r
  41                         <mkdir dir="${server.artifacts.dir}" />\r
  42                         <mkdir dir="${wsdl.dir}" />\r
  43                         <delete quiet="false" verbose="true" failonerror="false">\r
  44                                 <fileset dir="${server.artifacts.dir}">\r
  45                                         <include name="*.java" />\r
  46                                 </fileset>\r
  47                                 <fileset dir="${wsdl.dir}">\r
  48                                 </fileset>\r
  49                         </delete>\r
  50                         <!-- destdir - Where to put generated classes -->\r
  51                         <!-- sourcedestdir -  Where to put generated source files -->\r
  52                         <!-- resourcedestdir - Where to put generated source files -->\r
  53 \r
  54                 <wsgen sei="compbio.ws.server.AAConWS" \r
  55                                         sourcedestdir="${basedir}/webservices" \r
  56                                         destdir="${classes}" \r
  57                                         resourcedestdir="${wsdl.dir}" \r
  58                                         keep="true" genwsdl="true" \r
  59                                         extension="false" \r
  60                                         xendorsed="true"                        \r
  61                                         verbose="true">\r
  62                                         <classpath refid="classes.path" />\r
  63                                         <classpath refid="project.classpath" />\r
  64                 </wsgen>\r
  65 \r
  66                 <wsgen sei="compbio.ws.server.ClustalWS" \r
  67                                         sourcedestdir="${basedir}/webservices" \r
  68                                         destdir="${classes}" \r
  69                                         resourcedestdir="${wsdl.dir}" \r
  70                                         keep="true" genwsdl="true" \r
  71                                         extension="false" \r
  72                                         xendorsed="true"\r
  73                                         verbose="true">\r
  74                                         <classpath refid="classes.path" />\r
  75                                         <classpath refid="project.classpath" />\r
  76                 </wsgen>\r
  77                 <wsgen sei="compbio.ws.server.MuscleWS" \r
  78                                                 sourcedestdir="${basedir}/webservices" \r
  79                                                 destdir="${classes}" \r
  80                                                 resourcedestdir="${wsdl.dir}" \r
  81                                                 keep="true" genwsdl="true" \r
  82                                                 extension="false"\r
  83                                                 xendorsed="true"\r
  84                                                 verbose="true">\r
  85                                                 <classpath refid="classes.path" />\r
  86                                                 <classpath refid="project.classpath" />\r
  87                         </wsgen>\r
  88                 <wsgen sei="compbio.ws.server.MafftWS" \r
  89                                                 sourcedestdir="${basedir}/webservices" \r
  90                                                 destdir="${classes}" \r
  91                                                 resourcedestdir="${wsdl.dir}" \r
  92                                                 keep="true" genwsdl="true" \r
  93                                                 extension="false"\r
  94                                                 xendorsed="true"\r
  95                                                 verbose="true">\r
  96                                                 <classpath refid="classes.path" />\r
  97                                                 <classpath refid="project.classpath" />\r
  98                         </wsgen>\r
  99                 <wsgen sei="compbio.ws.server.TcoffeeWS" \r
 100                                                 sourcedestdir="${basedir}/webservices" \r
 101                                                 destdir="${classes}" \r
 102                                                 resourcedestdir="${wsdl.dir}" \r
 103                                                 keep="true" genwsdl="true" \r
 104                                                 extension="false" \r
 105                                                 xendorsed="true"                        \r
 106                                                 verbose="true">\r
 107                                                 <classpath refid="classes.path" />\r
 108                                                 <classpath refid="project.classpath" />\r
 109                 </wsgen>\r
 110                 \r
 111                 <wsgen sei="compbio.ws.server.DisemblWS" \r
 112                                                 sourcedestdir="${basedir}/webservices" \r
 113                                                 destdir="${classes}" \r
 114                                                 resourcedestdir="${wsdl.dir}" \r
 115                                                 keep="true" genwsdl="true" \r
 116                                                 extension="false" \r
 117                                                 xendorsed="true"                        \r
 118                                                 verbose="true">\r
 119                                                 <classpath refid="classes.path" />\r
 120                                                 <classpath refid="project.classpath" />\r
 121                 </wsgen>\r
 122                 <wsgen sei="compbio.ws.server.GlobPlotWS" \r
 123                                                 sourcedestdir="${basedir}/webservices" \r
 124                                                 destdir="${classes}" \r
 125                                                 resourcedestdir="${wsdl.dir}" \r
 126                                                 keep="true" genwsdl="true" \r
 127                                                 extension="false" \r
 128                                                 xendorsed="true"                        \r
 129                                                 verbose="true">\r
 130                                                 <classpath refid="classes.path" />\r
 131                                                 <classpath refid="project.classpath" />\r
 132                 </wsgen>\r
 133                 <wsgen sei="compbio.ws.server.JronnWS" \r
 134                                                 sourcedestdir="${basedir}/webservices" \r
 135                                                 destdir="${classes}" \r
 136                                                 resourcedestdir="${wsdl.dir}" \r
 137                                                 keep="true" genwsdl="true" \r
 138                                                 extension="false" \r
 139                                                 xendorsed="true"                        \r
 140                                                 verbose="true">\r
 141                                                 <classpath refid="classes.path" />\r
 142                                                 <classpath refid="project.classpath" />\r
 143                 </wsgen>\r
 144                 <wsgen sei="compbio.ws.server.IUPredWS" \r
 145                                                                 sourcedestdir="${basedir}/webservices" \r
 146                                                                 destdir="${classes}" \r
 147                                                                 resourcedestdir="${wsdl.dir}" \r
 148                                                                 keep="true" genwsdl="true" \r
 149                                                                 extension="false" \r
 150                                                                 xendorsed="true"                        \r
 151                                                                 verbose="true">\r
 152                                                                 <classpath refid="classes.path" />\r
 153                                                                 <classpath refid="project.classpath" />\r
 154                 </wsgen>\r
 155                 <wsgen sei="compbio.ws.server.RegistryWS" \r
 156                                                 sourcedestdir="${basedir}/webservices" \r
 157                                                 destdir="${classes}" \r
 158                                                 resourcedestdir="${wsdl.dir}" \r
 159                                                 keep="true" genwsdl="true" \r
 160                                                 extension="false" \r
 161                                                 xendorsed="true"                        \r
 162                                                 verbose="true">\r
 163                                                 <classpath refid="classes.path" />\r
 164                                                 <classpath refid="project.classpath" />\r
 165                 </wsgen>\r
 166         </target>\r
 167 \r
 168 \r
 169         <taskdef name="wsimport" classname="com.sun.tools.ws.ant.WsImport">\r
 170                 <classpath refid="project.classpath" />\r
 171         </taskdef>\r
 172 \r
 173         <target name="build-clients">\r
 174                         <property name="client.artifacts.dir" location="${basedir}/webservices/compbio/ws/client/stub" />\r
 175 \r
 176                         <mkdir dir="${client.artifacts.dir}" />\r
 177                         <delete quiet="false" verbose="true" failonerror="true">\r
 178                                 <fileset dir="${client.artifacts.dir}">\r
 179                                         <include name="*.java" />\r
 180                                 </fileset>\r
 181                         </delete>\r
 182                         <wsimport wsdl="${clustal.wsdl}" \r
 183                                 sourcedestdir="${basedir}/webservices/" \r
 184                                 keep="true" extension="false" \r
 185                                 verbose="true" xnocompile="true" \r
 186                                 package="compbio.ws.client.stub" \r
 187                                 quiet="false">\r
 188                         </wsimport>\r
 189                         <wsimport wsdl="${muscle.wsdl}" \r
 190                                 sourcedestdir="${basedir}/webservices/" \r
 191                                 keep="true" extension="false" \r
 192                                 verbose="true" xnocompile="true" \r
 193                                 package="compbio.ws.client.stub" \r
 194                                 quiet="false">\r
 195                         </wsimport>\r
 196                         <wsimport wsdl="${mafft.wsdl}" \r
 197                                 sourcedestdir="${basedir}/webservices/" \r
 198                                 keep="true" extension="false" \r
 199                                 verbose="true" xnocompile="true" \r
 200                                 package="compbio.ws.client.stub" \r
 201                                 quiet="false">\r
 202                         </wsimport>\r
 203                         <wsimport wsdl="${tcoffee.wsdl}" \r
 204                                 sourcedestdir="${basedir}/webservices/" \r
 205                                 keep="true" extension="false" \r
 206                                 verbose="true" xnocompile="true" \r
 207                                 package="compbio.ws.client.stub" \r
 208                                 quiet="false">\r
 209                         </wsimport>\r
 210                         <wsimport wsdl="${iupred.wsdl}" \r
 211                                                 sourcedestdir="${basedir}/webservices/" \r
 212                                                 keep="true" extension="false" \r
 213                                                 verbose="true" xnocompile="true" \r
 214                                                 package="compbio.ws.client.stub" \r
 215                                                 quiet="false">\r
 216                         </wsimport>\r
 217                     <wsimport wsdl="${registry.wsdl}" \r
 218                                                 sourcedestdir="${basedir}/webservices/" \r
 219                                                 keep="true" extension="false" \r
 220                                                 verbose="true" xnocompile="true" \r
 221                                                 package="compbio.ws.client.stub" \r
 222                                                 quiet="false">\r
 223                         </wsimport>\r
 224                         <!--            <xjcarg value="-cp" />\r
 225                                                 <xjcarg pathref="project.classpath" />\r
 226                                                 <xjcarg value="-Xcommons-lang" /> -->\r
 227                                 \r
 228                 </target>\r
 229 \r
 230         \r
 231         <!-- \r
 232         \r
 233         <target name="Build artifacts from schema" description="Test task to generate JaxB commons annotated data classes DOES NOT REALLY WORK">\r
 234                 <taskdef name="xjc" classname="com.sun.tools.xjc.XJCTask">\r
 235                         <classpath refid="project.classpath" />\r
 236                 </taskdef>\r
 237                 <mkdir dir="${basedir}/src/test" />\r
 238                 <xjc schema="${wsdl.dir}/SyncMsaWS_schema1.xsd" destdir="${basedir}/src/test">\r
 239                         <arg value="-Xcommons-lang" />\r
 240                 \r
 241                         <produces dir="${basedir}/src/test" />\r
 242                         <classpath refid="classes.path" />\r
 243                         <classpath>\r
 244                                         <fileset dir="${basedir}/lib">\r
 245                                                  //JAXB2 Basics library \r
 246                                                 <include name="jaxb2-basics-*.jar"/>\r
 247                                                  // JAXB2 Basics library dependencies \r
 248                                                 <include name="jaxb2-basics-runtime-*.jar"/>\r
 249                                                 <include name="jaxb2-basics-tools-*.jar"/>\r
 250                                                 <include name="commons-beanutils-*.jar"/>\r
 251                                                 <include name="commons-lang-*.jar"/>\r
 252                                                 <include name="commons-logging-*.jar"/>\r
 253                                         </fileset>\r
 254                                 </classpath>\r
 255                 </xjc>\r
 256         </target>\r
 257 \r
 258                                         -Xequals\r
 259                                         -XhashCode\r
 260                                         -Xcopyable\r
 261                                         -Xmergeable\r
 262         \r
 263         \r
 264         \r
 265         \r
 266         <target name="build-Clustal-client-from-live-server">\r
 267 \r
 268                 <wsimport wsdl="http://localhost:7979/ClustalWS?wsdl" \r
 269                         sourcedestdir="${basedir}/webservices/" \r
 270                         keep="true" \r
 271                         extension="false" \r
 272                         verbose="true" \r
 273                         xnocompile="true" \r
 274                         package="compbio.ws.client.stub" \r
 275                         quiet="false">\r
 276                 </wsimport>\r
 277         </target>\r
 278 \r
 279         <target name="build-Muscle-client-from-live-server">\r
 280                 <wsimport wsdl="http://localhost:7979/MuscleWS?wsdl" \r
 281                                         sourcedestdir="${basedir}/webservices/" \r
 282                                         keep="true" \r
 283                                         extension="false" \r
 284                                         verbose="true" \r
 285                                         xnocompile="true" \r
 286                                         package="compbio.ws.client.stub" \r
 287                                         quiet="false">\r
 288                 </wsimport>\r
 289         </target>\r
 290 \r
 291 \r
 292         <target name="build-client-jar" description="Pack WS client into a single jar THIS IS EXAMPLE ONLY!">\r
 293                 <echo>Jar file: wsclient</echo>\r
 294                 <delete file="${basedir}/resources/wsclient.jar">\r
 295                 </delete>\r
 296                 <jar jarfile="${basedir}/resources/wsclient.jar">\r
 297                         <fileset dir="${basedir}/WebContent/WEB-INF/classes/" includes="org/pimslims/ws/client/**/*.class" />\r
 298                         <fileset dir="${classes}" includes="org/pimslims/sec/*,org/pimslims/lab/Util.class" />\r
 299                         <zipfileset excludes="META-INF/*.SF" src="D:/workspace/current-pims-web/WebContent/WEB-INF/lib/webservices-rt.jar" />\r
 300                         <manifest>\r
 301                                 <attribute name="Built-By" value="${user.name}" />\r
 302                                 <attribute name="Main-Class" value="org.pimslims.ws.client.FileUploadClient" />\r
 303                                 <attribute name="Class-Path" value="." />\r
 304                                 <attribute name="Implementation-Title" value="PIMS File Upload Web Service Client" />\r
 305                                 <attribute name="Implementation-Vendor" value="The PIMS team" />\r
 306                                 <attribute name="Implementation-URL" value="http://www.pims-lims.org" />\r
 307                         </manifest>\r
 308                 </jar>\r
 309         </target>\r
 310 \r
 311 \r
 312         <target name="run-client-jar" description="THIS IS EXAMPLE ONLY">\r
 313                 <java jar="${basedir}/resources/wsclient.jar" fork="true" failonerror="true" maxmemory="256m">\r
 314                         <arg value="C:/Documents and Settings/pvt43/Desktop/Leeds Sequencing/Copy of Files to up load" />\r
 315                 </java>\r
 316         </target>\r
 317 \r
 318         <target name="run-client-class" description="THIS IS EXAMPLE ONLY">\r
 319                 <java classname="org.pimslims.ws.client.FileUploadClient" fork="true" failonerror="true" maxmemory="256m">\r
 320                         <classpath refid="project.classpath" />\r
 321                         <classpath refid="instrument.classpath" />\r
 322                 </java>\r
 323         </target>\r
 324 -->\r
 325 </project>\r
 326 \r