1 <?xml version="1.0" encoding="UTF-8"?>
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3 <project default="build-server" name="compbio-ws" basedir=".">
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6 <property name="classes" location="${basedir}/WEB-INF/classes" />
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7 <property name="lib.path" location="${basedir}/WEB-INF/lib" />
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9 <path id="classes.path">
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10 <pathelement location="${classes}" />
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13 <!-- add libraries -->
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14 <path id="project.classpath">
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15 <fileset dir="${lib.path}">
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16 <include name="*.jar" />
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20 <property name="wsdl.dir" location="${basedir}/webservices/compbio/ws/server/resource" />
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21 <property name="clustal.wsdl" location="${wsdl.dir}/ClustalWS.wsdl" />
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22 <property name="muscle.wsdl" location="${wsdl.dir}/MuscleWS.wsdl" />
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23 <property name="tcoffee.wsdl" location="${wsdl.dir}/TcoffeeWS.wsdl" />
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24 <property name="mafft.wsdl" location="${wsdl.dir}/MafftWS.wsdl" />
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25 <property name="aacon.wsdl" location="${wsdl.dir}/AAConWS.wsdl" />
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26 <property name="disembl.wsdl" location="${wsdl.dir}/DisemblWS.wsdl" />
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27 <property name="globplot.wsdl" location="${wsdl.dir}/GlobPlotWS.wsdl" />
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28 <property name="jronn.wsdl" location="${wsdl.dir}/JronnWS.wsdl" />
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31 <taskdef name="wsgen" onerror="report" classname="com.sun.tools.ws.ant.WsGen">
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32 <classpath refid="project.classpath" />
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35 <target name="build-server">
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36 <!-- TODO this runs file from Eclipse, but with Ant only this need to depends on clean and build! -->
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37 <property name="server.artifacts.dir" location="${basedir}/webservices/compbio/ws/server/jaxws/" />
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39 <mkdir dir="${server.artifacts.dir}" />
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40 <mkdir dir="${wsdl.dir}" />
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41 <delete quiet="false" verbose="true" failonerror="false">
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42 <fileset dir="${server.artifacts.dir}">
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43 <include name="*.java" />
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45 <fileset dir="${wsdl.dir}">
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48 <!-- destdir - Where to put generated classes -->
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49 <!-- sourcedestdir - Where to put generated source files -->
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50 <!-- resourcedestdir - Where to put generated source files -->
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52 <wsgen sei="compbio.ws.server.AAConWS"
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53 sourcedestdir="${basedir}/webservices"
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54 destdir="${classes}"
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55 resourcedestdir="${wsdl.dir}"
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56 keep="true" genwsdl="true"
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60 <classpath refid="classes.path" />
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61 <classpath refid="project.classpath" />
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64 <wsgen sei="compbio.ws.server.ClustalWS"
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65 sourcedestdir="${basedir}/webservices"
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66 destdir="${classes}"
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67 resourcedestdir="${wsdl.dir}"
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68 keep="true" genwsdl="true"
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72 <classpath refid="classes.path" />
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73 <classpath refid="project.classpath" />
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75 <wsgen sei="compbio.ws.server.MuscleWS"
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76 sourcedestdir="${basedir}/webservices"
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77 destdir="${classes}"
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78 resourcedestdir="${wsdl.dir}"
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79 keep="true" genwsdl="true"
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83 <classpath refid="classes.path" />
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84 <classpath refid="project.classpath" />
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86 <wsgen sei="compbio.ws.server.MafftWS"
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87 sourcedestdir="${basedir}/webservices"
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88 destdir="${classes}"
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89 resourcedestdir="${wsdl.dir}"
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90 keep="true" genwsdl="true"
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94 <classpath refid="classes.path" />
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95 <classpath refid="project.classpath" />
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97 <wsgen sei="compbio.ws.server.TcoffeeWS"
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98 sourcedestdir="${basedir}/webservices"
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99 destdir="${classes}"
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100 resourcedestdir="${wsdl.dir}"
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101 keep="true" genwsdl="true"
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105 <classpath refid="classes.path" />
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106 <classpath refid="project.classpath" />
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109 <wsgen sei="compbio.ws.server.DisemblWS"
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110 sourcedestdir="${basedir}/webservices"
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111 destdir="${classes}"
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112 resourcedestdir="${wsdl.dir}"
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113 keep="true" genwsdl="true"
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117 <classpath refid="classes.path" />
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118 <classpath refid="project.classpath" />
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120 <wsgen sei="compbio.ws.server.GlobPlotWS"
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121 sourcedestdir="${basedir}/webservices"
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122 destdir="${classes}"
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123 resourcedestdir="${wsdl.dir}"
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124 keep="true" genwsdl="true"
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128 <classpath refid="classes.path" />
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129 <classpath refid="project.classpath" />
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131 <wsgen sei="compbio.ws.server.JronnWS"
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132 sourcedestdir="${basedir}/webservices"
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133 destdir="${classes}"
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134 resourcedestdir="${wsdl.dir}"
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135 keep="true" genwsdl="true"
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139 <classpath refid="classes.path" />
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140 <classpath refid="project.classpath" />
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145 <taskdef name="wsimport" classname="com.sun.tools.ws.ant.WsImport">
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146 <classpath refid="project.classpath" />
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149 <target name="build-clients">
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150 <property name="client.artifacts.dir" location="${basedir}/webservices/compbio/ws/client/stub" />
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152 <mkdir dir="${client.artifacts.dir}" />
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153 <delete quiet="false" verbose="true" failonerror="true">
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154 <fileset dir="${client.artifacts.dir}">
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155 <include name="*.java" />
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158 <wsimport wsdl="${clustal.wsdl}"
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159 sourcedestdir="${basedir}/webservices/"
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160 keep="true" extension="false"
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161 verbose="true" xnocompile="true"
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162 package="compbio.ws.client.stub"
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165 <wsimport wsdl="${muscle.wsdl}"
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166 sourcedestdir="${basedir}/webservices/"
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167 keep="true" extension="false"
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168 verbose="true" xnocompile="true"
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169 package="compbio.ws.client.stub"
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172 <wsimport wsdl="${mafft.wsdl}"
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173 sourcedestdir="${basedir}/webservices/"
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174 keep="true" extension="false"
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175 verbose="true" xnocompile="true"
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176 package="compbio.ws.client.stub"
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179 <wsimport wsdl="${tcoffee.wsdl}"
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180 sourcedestdir="${basedir}/webservices/"
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181 keep="true" extension="false"
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182 verbose="true" xnocompile="true"
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183 package="compbio.ws.client.stub"
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186 <!-- <xjcarg value="-cp" />
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187 <xjcarg pathref="project.classpath" />
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188 <xjcarg value="-Xcommons-lang" /> -->
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195 <target name="Build artifacts from schema" description="Test task to generate JaxB commons annotated data classes DOES NOT REALLY WORK">
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196 <taskdef name="xjc" classname="com.sun.tools.xjc.XJCTask">
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197 <classpath refid="project.classpath" />
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199 <mkdir dir="${basedir}/src/test" />
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200 <xjc schema="${wsdl.dir}/SyncMsaWS_schema1.xsd" destdir="${basedir}/src/test">
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201 <arg value="-Xcommons-lang" />
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203 <produces dir="${basedir}/src/test" />
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204 <classpath refid="classes.path" />
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206 <fileset dir="${basedir}/lib">
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207 //JAXB2 Basics library
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208 <include name="jaxb2-basics-*.jar"/>
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209 // JAXB2 Basics library dependencies
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210 <include name="jaxb2-basics-runtime-*.jar"/>
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211 <include name="jaxb2-basics-tools-*.jar"/>
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212 <include name="commons-beanutils-*.jar"/>
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213 <include name="commons-lang-*.jar"/>
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214 <include name="commons-logging-*.jar"/>
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228 <target name="build-Clustal-client-from-live-server">
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230 <wsimport wsdl="http://localhost:7979/ClustalWS?wsdl"
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231 sourcedestdir="${basedir}/webservices/"
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236 package="compbio.ws.client.stub"
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241 <target name="build-Muscle-client-from-live-server">
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242 <wsimport wsdl="http://localhost:7979/MuscleWS?wsdl"
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243 sourcedestdir="${basedir}/webservices/"
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248 package="compbio.ws.client.stub"
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254 <target name="build-client-jar" description="Pack WS client into a single jar THIS IS EXAMPLE ONLY!">
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255 <echo>Jar file: wsclient</echo>
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256 <delete file="${basedir}/resources/wsclient.jar">
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258 <jar jarfile="${basedir}/resources/wsclient.jar">
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259 <fileset dir="${basedir}/WebContent/WEB-INF/classes/" includes="org/pimslims/ws/client/**/*.class" />
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260 <fileset dir="${classes}" includes="org/pimslims/sec/*,org/pimslims/lab/Util.class" />
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261 <zipfileset excludes="META-INF/*.SF" src="D:/workspace/current-pims-web/WebContent/WEB-INF/lib/webservices-rt.jar" />
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263 <attribute name="Built-By" value="${user.name}" />
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264 <attribute name="Main-Class" value="org.pimslims.ws.client.FileUploadClient" />
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265 <attribute name="Class-Path" value="." />
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266 <attribute name="Implementation-Title" value="PIMS File Upload Web Service Client" />
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267 <attribute name="Implementation-Vendor" value="The PIMS team" />
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268 <attribute name="Implementation-URL" value="http://www.pims-lims.org" />
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274 <target name="run-client-jar" description="THIS IS EXAMPLE ONLY">
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275 <java jar="${basedir}/resources/wsclient.jar" fork="true" failonerror="true" maxmemory="256m">
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276 <arg value="C:/Documents and Settings/pvt43/Desktop/Leeds Sequencing/Copy of Files to up load" />
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280 <target name="run-client-class" description="THIS IS EXAMPLE ONLY">
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281 <java classname="org.pimslims.ws.client.FileUploadClient" fork="true" failonerror="true" maxmemory="256m">
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282 <classpath refid="project.classpath" />
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283 <classpath refid="instrument.classpath" />
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