#
# makefile for fasta3, fasta3_t.  Use makefile.pvm for pvcompxx.
#
# for more information on FASTA on SGI's, see:
#
#	http://www.sgi.com/chembio/resources/fasta/index.html
#
# use -DBIG_LIB64 to generate 64-bit offsets in map_db .xin files.  This
# only works on SGI's with the -64 option.

CC= cc -w -64 -mips4 -O2 -TENV:X=3 -DSGI_BUG -Wl,-multigot -DIRIX
#CC= cc -64 -mips4 -g -DSGI_BUG -DDEBUG -DIRIX

HFLAGS= -64 -mips4 -o
NFLAGS= -64 -mips4 -o

#CC= cc -g
#HFLAGS= -o
#NFLAGS= -o

LIB_M= -lm
# For R2000/R3000 MIPS Processors, use -mips1
#
#CC= cc -mips1 -O2 
#HFLAGS= -mips1 -o
#NFLAGS= -mips1 -o
#
# For R4000 MIPS Processors, use -mips2:
#
#CC = cc -mips2 -O2
#HFLAGS= -mips2 -o
#NFLAGS= -mips2 -o
#

CFLAGS= -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DBIGMEM -DSFCHAR="':'" -DMAX_WORKERS=4 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"crick.med.virginia.edu/fasta/cgi"' -DIS_BIG_ENDIAN -DUSE_MMAP -DBIG_LIB64 -DHAS_INTTYPES -DSAMP_STATS -DPGM_DOC

THR_SUBS = pthr_subs2
THR_LIBS = -lpthread
THR_CC =

XDIR = /seqprg/slib/bin

DROPNFA_O = drop_nfa.o
DROPGSW_O = dropgsw.o
DROPRSS_O = dropnsw.o
DROPTFA_O = drop_tfa.o

# renamed (fasta34)  programs
include Makefile34m.common
# conventional (fasta3) names
# include Makefile.common