#
# $Name: fa_34_26_5 $ - $Id: Makefile34.common_sql,v 1.10 2005/12/07 17:22:02 wrp Exp $
#
# commands common to all architectures
# if your architecture does not support "include", append at the end.
#

# use for "normal" fasta34(_t) programs - only one query
COMP_LIBO=comp_lib.o
COMP_THRO=comp_thr.o
GETSEQO = getseq.o
# use for multiple query sequences, requires "-n" for DNA fasta, does not
# work with prss34 (yet)
#COMP_LIB=comp_mlib.o
#COMP_THRO=comp_mthr.o
#
# standard nxgetaa, no memory mapping for 0 - 6
LGETLIB=getseq.o lgetlib.o lgetaa_m.o
NGETLIB=nmgetlib

# memory mapping for 0FASTA, 5PIRVMS, 6GCGBIN
# LGETLIB=getseq.o lgetlib.o lgetaa_m.o
# NGETLIB=nmgetlib

NRAND=nrandom

# use ncbl_lib.c for BLAST1.4 support instead of ncbl2_mlib.c
#NCBL_LIB=ncbl_lib.o

# this option should support both formats (BLAST1.4 not currently supported): 
#NCBL_LIB=ncbl_lib.o ncbl2_mlib.o

# normally use ncbl2_mlib.c
#NCBL_LIB=ncbl2_mlib.o
#LIB_M= -lm

# this option supports NCBI BLAST2 and mySQL
# it requires  "-I/usr/include/mysql -DMYSQL_DB" in CFLAGS
# and "-L/usr/lib/mysql -lmysqlclient -lz" in LIB_M
# some systems may also require a LD_LIBRARY_PATH change
LIB_M= -L/usr/lib/mysql -lmysqlclient -lz -lm
#LIB_M= -lm
NCBL_LIB=ncbl2_mlib.o mysql_lib.o
#NCBL_LIB=ncbl2_mlib.o

include Makefile.pcom

include Makefile.fcom