Search with FASTA

Choose program and database(s) to query:
Program:

Databases: Blue databases and possibly DNA databases can be re-searched

Protein
NBRF Annotated Protein Database (rel. 53)
NBRF Protein Database (complete)
NRL_3d structure database
NCBI/Blast NR protein database
NCBI/Blast NR protein database (seg)
NCBI/Blast Swiss-Prot
NCBI/BLAST Swiss-Prot (seg)
OWL Nonredundant database
Yeast Proteins

DNA
Primate
Rodent
Other Mammals
Vertebrates
High Throughput Genomics
Invertebrates
Plants
Bacteria

Structural RNA
Viral
Phage
Synthetics
EST sequences
BLAST human ESTs
BLAST mouse ESTs

Sequence type:
Protein DNA (both strands) DNA (forward only) DNA (rev-comp only)

Enter query sequence: Subset range:

Entrez protein sequence browser

Entrez DNA sequence browser

Other options:

Ktup:
Protein matrix:
DNA matrix:
gap:
ext:
misc:

Output limits:
E(): Highest E(): scores: alignments:

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Copyright 1988, 1991, 1992, 1993, 1994 1995, 1997, 1999 by William R. Pearson and the University of Virginia. All rights reserved. The FASTA program and documentation may not be sold or incorporated into a commercial product, in whole or in part, without written consent of William R. Pearson and the University of Virginia.