#define path to BLOSUM files
setenv BLASTMAT /home/asherstnev/Projects/Jpred.project/jpred/branches/portable/data/blast
ln -s /data/UNIREFdb databases

####################################################################################################
#  test of main binaries
#
# 1 core PHIBLAST check ()
# 1 core PHIBLAST check ()
../bin/blastpgp -e0.05 -h0.01 -m6 -b10000 -v10000 -j3 -d /home/asherstnev/Projects/Jpred.project/jpred/branches/portable/tests/databases/uniref90.filt -i d16vpa_.fasta -Q test.test.profile -o test.test.blas
# multi-core (-a3) PHIBLAST check
../bin/blastpgp -a4 -e0.05 -h0.01 -m6 -b10000 -v10000 -j3 -d /home/asherstnev/Projects/Jpred.project/jpred/branches/portable/tests/databases/uniref90.filt -i d16vpa_.fasta -Q test.test.profile -o test.test.blas

####################################################################################################
#  test of x86_64 binaries
#
# 1 core PHIBLAST check ()
../x86_64/blastpgp -e0.05 -h0.01 -m6 -b10000 -v10000 -j3 -d /home/asherstnev/Projects/Jpred.project/jpred/branches/portable/tests/databases/uniref90.filt -i d16vpa_.fasta -Q test.test.profile -o test.test.blas
# multi-core (-a3) PHIBLAST check
../x86_64/blastpgp -a4 -e0.05 -h0.01 -m6 -b10000 -v10000 -j3 -d /home/asherstnev/Projects/Jpred.project/jpred/branches/portable/tests/databases/uniref90.filt -i d16vpa_.fasta -Q test.test.profile -o test.test.blas


####################################################################################################
../jpred.pl -seq d16vpa_.fas -o res_d16vpa_ -dbname ported_db -dbpath /data/UNIREFdb/ -ncpu 4 -debug
../jpred.pl -seq SCOP175B_nr.seq -o res_SCOP175B_nr -dbname ported_db -dbpath /data/UNIREFdb/ -ncpu 4 -debug
../jpred.pl -seq T-state1.fas    -o res_T-state1.res -dbname ported_db -dbpath /data/UNIREFdb/ -ncpu 4 -debug
../jpred.pl -seq T-state2.fas    -o res_T-state2.res -dbname ported_db -dbpath /data/UNIREFdb/ -ncpu 4 -debug

./webscripts/fasta2concise < d16vpa_.res.align > d16vpa_.res.align.csv