PG t_coffee 4_TCOFFEE TCOFFEE PG t_coffee type sequence_multiple_aligner PG t_coffee ADDRESS http://www.tcoffee.org PG t_coffee language C PG t_coffee language2 C PG t_coffee source http://www.tcoffee.org/Packages/T-COFFEE_distribution.tar.gz PG t_coffee update_action always PG t_coffee mode tcoffee,mcoffee,rcoffee,expresso,3dcoffee PG clustalw2 4_TCOFFEE CLUSTALW2 PG clustalw2 type sequence_multiple_aligner PG clustalw2 ADDRESS http://www.clustal.org PG clustalw2 language C++ PG clustalw2 language2 CXX PG clustalw2 source http://www.clustal.org/download/2.0.10/clustalw-2.0.10-src.tar.gz PG clustalw2 mode mcoffee,rcoffee PG clustalw 4_TCOFFEE CLUSTALW PG clustalw type sequence_multiple_aligner PG clustalw ADDRESS http://www.clustal.org PG clustalw language C PG clustalw language2 C PG clustalw source http://www.clustal.org/download/1.X/ftp-igbmc.u-strasbg.fr/pub/ClustalW/clustalw1.82.UNIX.tar.gz PG clustalw mode mcoffee,rcoffee PG dialign-t 4_TCOFFEE DIALIGNT PG dialign-t type sequence_multiple_aligner PG dialign-t ADDRESS http://dialign-tx.gobics.de/ PG dialign-t DIR /usr/share/dialign-tx/ PG dialign-t language C PG dialign-t language2 C PG dialign-t source http://dialign-tx.gobics.de/DIALIGN-TX_1.0.1.tar.gz PG dialign-t mode mcoffee PG dialign-t binary dialign-t PG dialign-tx 4_TCOFFEE DIALIGNTX PG dialign-tx type sequence_multiple_aligner PG dialign-tx ADDRESS http://dialign-tx.gobics.de/ PG dialign-tx DIR /usr/share/dialign-tx/ PG dialign-tx language C PG dialign-tx language2 C PG dialign-tx source http://dialign-tx.gobics.de/DIALIGN-TX_1.0.1.tar.gz PG dialign-tx mode mcoffee PG dialign-tx binary dialign-tx PG poa 4_TCOFFEE POA PG poa type sequence_multiple_aligner PG poa ADDRESS http://www.bioinformatics.ucla.edu/poa/ PG poa language C PG poa language2 C PG poa source http://downloads.sourceforge.net/poamsa/poaV2.tar.gz PG poa DIR /usr/share/ PG poa FILE1 blosum80.mat PG poa mode mcoffee PG poa binary poa PG probcons 4_TCOFFEE PROBCONS PG probcons type sequence_multiple_aligner PG probcons ADDRESS http://probcons.stanford.edu/ PG probcons language2 CXX PG probcons language C++ PG probcons source http://probcons.stanford.edu/probcons_v1_12.tar.gz PG probcons mode mcoffee PG probcons binary probcons PG mafft 4_TCOFFEE MAFFT PG mafft type sequence_multiple_aligner PG mafft ADDRESS http://align.bmr.kyushu-u.ac.jp/mafft/online/server/ PG mafft language C PG mafft language C PG mafft source http://align.bmr.kyushu-u.ac.jp/mafft/software/mafft-6.603-with-extensions-src.tgz PG mafft windows http://align.bmr.kyushu-u.ac.jp/mafft/software/mafft-6.603-mingw.tar PG mafft mode mcoffee,rcoffee PG mafft binary mafft.tar.gz PG muscle 4_TCOFFEE MUSCLE PG muscle type sequence_multiple_aligner PG muscle ADDRESS http://www.drive5.com/muscle/ PG muscle language C++ PG muscle language2 GPP PG muscle source http://www.drive5.com/muscle/downloads3.6/muscle3.6_src.tar.gz PG muscle windows http://www.drive5.com/muscle/downloads3.6/muscle3.6_win32.zip PG muscle linux http://www.drive5.com/muscle/downloads3.6/muscle3.6_linux_ia32.tar.gz PG muscle mode mcoffee,rcoffee PG pcma 4_TCOFFEE PCMA PG pcma type sequence_multiple_aligner PG pcma ADDRESS ftp://iole.swmed.edu/pub/PCMA/ PG pcma language C PG pcma language2 C PG pcma source ftp://iole.swmed.edu/pub/PCMA/pcma.tar.gz PG pcma mode mcoffee PG kalign 4_TCOFFEE KALIGN PG kalign type sequence_multiple_aligner PG kalign ADDRESS http://msa.cgb.ki.se PG kalign language C PG kalign language2 C PG kalign source http://msa.cgb.ki.se/downloads/kalign/current.tar.gz PG kalign mode mcoffee PG amap 4_TCOFFEE AMAP PG amap type sequence_multiple_aligner PG amap ADDRESS http://bio.math.berkeley.edu/amap/ PG amap language C++ PG amap language2 CXX PG amap source http://baboon.math.berkeley.edu/amap/download/amap.2.2.tar.gz PG amap mode mcoffee PG proda 4_TCOFFEE PRODA PG proda type sequence_multiple_aligner PG proda ADDRESS http://proda.stanford.edu PG proda language C++ PG proda language2 CXX PG proda source http://proda.stanford.edu/proda_1_0.tar.gz PG proda mode mcoffee PG prank 4_TCOFFEE PRANK PG prank type sequence_multiple_aligner PG prank ADDRESS http://www.ebi.ac.uk/goldman-srv/prank/ PG prank language C++ PG prank language2 CXX PG prank source http://www.ebi.ac.uk/goldman-srv/prank/src/old/prank.src.081202.tgz PG prank mode mcoffee PG sap 4_TCOFFEE SAP PG sap type structure_pairwise_aligner PG sap ADDRESS http://mathbio.nimr.mrc.ac.uk/wiki/Software PG sap language C PG sap language2 C PG sap source http://www.tcoffee.org/Packages/sap_distribution_TCC_0.6.tar.gz PG sap mode expresso,3dcoffee PG TMalign 4_TCOFFEE TMALIGN PG TMalign type structure_pairwise_aligner PG TMalign ADDRESS http://zhang.bioinformatics.ku.edu/TM-align/TMalign.f PG TMalign language Fortran PG TMalign language2 Fortran PG TMalign source http://zhang.bioinformatics.ku.edu/TM-align/TMalign.f PG TMalign linux http://zhang.bioinformatics.ku.edu/TM-align/TMalign_32.gz PG TMalign mode expresso,3dcoffee PG mustang 4_TCOFFEE MUSTANG PG mustang type structure_pairwise_aligner PG mustang ADDRESS http://www.cs.mu.oz.au/~arun/mustang PG mustang language C++ PG mustang language2 CXX PG mustang source http://www.cs.mu.oz.au/~arun/mustang/mustang_v.3.tgz PG mustang mode expresso,3dcoffee PG lsqman 4_TCOFFEE LSQMAN PG lsqman type structure_pairwise_aligner PG lsqman ADDRESS empty PG lsqman language empty PG lsqman language2 empty PG lsqman source empty PG lsqman update_action never PG lsqman mode expresso,3dcoffee PG align_pdb 4_TCOFFEE ALIGN_PDB PG align_pdb type structure_pairwise_aligner PG align_pdb ADDRESS empty PG align_pdb language empty PG align_pdb language2 empty PG align_pdb source empty PG align_pdb update_action never PG align_pdb mode expresso,3dcoffee PG fugueali 4_TCOFFEE FUGUE PG fugueali type structure_pairwise_aligner PG fugueali ADDRESS http://www-cryst.bioc.cam.ac.uk/fugue/download.html PG fugueali language empty PG fugueali language2 empty PG fugueali source empty PG fugueali update_action never PG fugueali mode expresso,3dcoffee PG dalilite.pl 4_TCOFFEE DALILITEc PG dalilite.pl type structure_pairwise_aligner PG dalilite.pl ADDRESS built_in PG dalilite.pl ADDRESS2 http://www.ebi.ac.uk/Tools/webservices/services/dalilite PG dalilite.pl language Perl PG dalilite.pl language2 Perl PG dalilite.pl source empty PG dalilite.pl update_action never PG dalilite.pl mode expresso,3dcoffee PG probconsRNA 4_TCOFFEE PROBCONSRNA PG probconsRNA type RNA_multiple_aligner PG probconsRNA ADDRESS http://probcons.stanford.edu/ PG probconsRNA language C++ PG probconsRNA language2 CXX PG probconsRNA source http://probcons.stanford.edu/probconsRNA.tar.gz PG probconsRNA mode mcoffee,rcoffee PG sfold 4_TCOFFEE CONSAN PG sfold type RNA_pairwise_aligner PG sfold ADDRESS http://selab.janelia.org/software/consan/ PG sfold language empty PG sfold language2 empty PG sfold source empty PG sfold update_action never PG sfold mode rcoffee PG RNAplfold 4_TCOFFEE RNAPLFOLD PG RNAplfold type RNA_secondarystructure_predictor PG RNAplfold ADDRESS http://www.tbi.univie.ac.at/~ivo/RNA/ PG RNAplfold language C PG RNAplfold language2 C PG RNAplfold source http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-1.7.2.tar.gz PG RNAplfold mode rcoffee PG hmmtop 4_TCOFFEE HMMTOP PG hmmtop type protein_secondarystructure_predictor PG hmmtop ADDRESS www.enzim.hu/hmmtop/ PG hmmtop language C PG hmmtop language2 C PG hmmtop source empty PG hmmtop update_action never PG hmmtop mode tcoffee PG gorIV 4_TCOFFEE GOR4 PG gorIV type protein_secondarystructure_predictor PG gorIV ADDRESS http://mig.jouy.inra.fr/logiciels/gorIV/ PG gorIV language C PG gorIV language2 C PG gorIV source http://mig.jouy.inra.fr/logiciels/gorIV/GOR_IV.tar.gz PG gorIV update_action never PG gorIV mode tcoffee PG wublast.pl 4_TCOFFEE EBIWUBLASTc PG wublast.pl type protein_homology_predictor PG wublast.pl ADDRESS built_in PG wublast.pl ADDRESS2 http://www.ebi.ac.uk/Tools/webservices/services/wublast PG wublast.pl language Perl PG wublast.pl language2 Perl PG wublast.pl source empty PG wublast.pl update_action never PG wublast.pl mode psicoffee,expresso,3dcoffee PG blastpgp.pl 4_TCOFFEE EBIBLASTPGPc PG blastpgp.pl type protein_homology_predictor PG blastpgp.pl ADDRESS built_in PG blastpgp.pl ADDRESS2 http://www.ebi.ac.uk/Tools/webservices/services/blastpgp PG blastpgp.pl language Perl PG blastpgp.pl language2 Perl PG blastpgp.pl source empty PG blastpgp.pl update_action never PG blastpgp.pl mode psicoffee,expresso,3dcoffee PG blastcl3 4_TCOFFEE NCBIWEBBLAST PG blastcl3 type protein_homology_predictor PG blastcl3 ADDRESS ftp://ftp.ncbi.nih.gov/blast/executables/LATEST PG blastcl3 language C PG blastcl3 language2 C PG blastcl3 source empty PG blastcl3 update_action never PG blastcl3 mode psicoffee,expresso,3dcoffee PG blastpgp 4_TCOFFEE NCBIBLAST PG blastpgp type protein_homology_predictor PG blastpgp ADDRESS ftp://ftp.ncbi.nih.gov/blast/executables/LATEST PG blastpgp language C PG blastpgp language2 C PG blastpgp source empty PG blastpgp update_action never PG blastpgp mode psicoffee,expresso,3dcoffee PG SOAP::Lite 4_TCOFFEE SOAPLITE PG SOAP::Lite type library PG SOAP::Lite ADDRESS http://cpansearch.perl.org/src/MKUTTER/SOAP-Lite-0.710.08/Makefile.PL PG SOAP::Lite language Perl PG SOAP::Lite language2 Perl PG SOAP::Lite source empty PG SOAP::Lite mode psicoffee,expresso,3dcoffee MODE tcoffee name tcoffee MODE rcoffee name rcoffee MODE 3dcoffee name 3dcoffee MODE mcoffee name mcoffee MODE expresso name expresso