Jalview RNA Support

Jalview RNA support was first added during a 2010 Google Summer of Code Project by Lauren Lui (see her NESCent wiki page and the project blog).

What was added

In 2011, Jan Engelhardt was supported by GSOC to extend Lauren's work, with support for viewing secondary structure in VARNA and visualizing base pair contact conservation.

What Jan added

TODO

Secondary Structure Visualization/Annotation

Colour schemes

Embed VARNA, An RNA Secondary Structure Viewer

Miscellaneous