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Jalview comes in two distinct flavours.
The main application allows connection to multiple web services provided
at the University of Dundee as well as a host of additional useful features
such as printing, making images from your alignment and annotating your
alignment. You need to download and install this software.
The applet version runs in web browsers and is a useful interactive
display for precalculated alignments, features and annotations files.
It does not have the full functionality of the main application, such
as making images, saving files, running web service jobs due to security
restrictions imposed on applets.
For more information on how to use the applet in your
website, see full list of applet
parameters.
Pressing one of the buttons below will load up JalviewLite, a cut down version
of Jalview, which runs within your web browser.
Ferredoxins, chloroplast precursor related UniRef50
cluster
(15 sequences x 150 residues)
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User Defined Colours, loads an associated Newick
format tree file which is used to sort the alignment, and group consensus and sequence logos are shown below the alignment. |
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Displays a features file on the alignment |
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Associates PDB file 1GAQ with sequence FER1_MAIZE |
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Displays a Multiple Sequence Alignment
Based JNet Prediction for a Sequence |
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Displays an RFAM RNA fold family with secondary structure annotation |
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For more JalviewLite examples, follow the links below.
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